메뉴 건너뛰기




Volumn , Issue , 2005, Pages 123-130

Exact match search in sequence data using suffix trees

Author keywords

Bioinformatics; Indexing; Sequence Databases; Suffix Trees

Indexed keywords

COMPUTATIONAL METHODS; DATABASE SYSTEMS; INFORMATION RETRIEVAL; PERFORMANCE; TREES (MATHEMATICS);

EID: 33745784628     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1099554.1099579     Document Type: Conference Paper
Times cited : (1)

References (21)
  • 3
    • 0029251238 scopus 로고
    • Efficient implementation of suffix trees
    • A. Andersson and S. Nilsson. Efficient implementation of suffix trees. In Softw. Pract. Exp., 25(2):129-141, 1995.
    • (1995) Softw. Pract. Exp. , vol.25 , Issue.2 , pp. 129-141
    • Andersson, A.1    Nilsson, S.2
  • 4
    • 0022663527 scopus 로고
    • The Boyer-Moore-Galil string searching strategies revisited
    • A. Apostolico and R. Giancarlo. The Boyer-Moore-Galil string searching strategies revisited. In SIAM Journal on Computing 15(1):98-105, 1986.
    • (1986) SIAM Journal on Computing , vol.15 , Issue.1 , pp. 98-105
    • Apostolico, A.1    Giancarlo, R.2
  • 6
    • 0004287639 scopus 로고    scopus 로고
    • Laboratoire d'Informatique de Rouen, Université de Rouen. Last accessed: April, 2005
    • Christian Charras and Thierry Lecroq. ESMAJ: Exact String Matching Algorithms, Animation in Java. http://wwwigm.univ-lv.frl~lecroq/string/index. html. Laboratoire d'Informatique de Rouen, Université de Rouen. Last accessed: April, 2005.
    • ESMAJ: Exact String Matching Algorithms, Animation in Java
    • Charras, C.1    Lecroq, T.2
  • 7
  • 9
    • 33745600161 scopus 로고    scopus 로고
    • Algorithms on strings, trees and sequences: Computer science and computational biology
    • D. Gusfield. Algorithms on strings, trees and sequences: computer science and computational biology. Cambridge University Press, 1997.
    • (1997) Cambridge University Press
    • Gusfield, D.1
  • 11
    • 84944328392 scopus 로고    scopus 로고
    • A database index to large biological sequences
    • E. Hunt, M.P. Atkinson, and R.W. Irving. A Database Index to Large Biological Sequences. In VLDB J., 7(3):139-148, 2001.
    • (2001) VLDB J. , vol.7 , Issue.3 , pp. 139-148
    • Hunt, E.1    Atkinson, M.P.2    Irving, R.W.3
  • 12
    • 21144435627 scopus 로고    scopus 로고
    • The suffix binary search tree and suffix AVL tree
    • R.W. Irving and L. Love. The Suffix Binary Search Tree and Suffix AVL Tree. In Journal of Discrete Algorithms, 1 (2003) 387-408, 2003.
    • (2003) Journal of Discrete Algorithms , vol.1 , Issue.2003 , pp. 387-408
    • Irving, R.W.1    Love, L.2
  • 14
    • 0027681165 scopus 로고
    • Suffix arrays: A new method for on-line string searches
    • U. Manber and G. Myers. Suffix arrays: a new method for on-line string searches. SIAM J. Comput., 22(5):935-948, 1993.
    • (1993) SIAM J. Comput. , vol.22 , Issue.5 , pp. 935-948
    • Manber, U.1    Myers, G.2
  • 15
    • 27144540187 scopus 로고    scopus 로고
    • OASIS: An online and accurate technique for local-alignment searches on biological sequences
    • C. Meek, J. M. Patel, and S. Kassety. OASIS: An Online and Accurate Technique for Local-alignment Searches on Biological Sequences. In Proc. of VLDB, 2003
    • (2003) Proc. of VLDB
    • Meek, C.1    Patel, J.M.2    Kassety, S.3
  • 16
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • E.M. McCreight. A Space-economical Suffix Tree Construction Algorithm. In Journal of the ACM, 23(2):262-272, 1976.
    • (1976) Journal of the ACM , vol.23 , Issue.2 , pp. 262-272
    • McCreight, E.M.1
  • 17
    • 38149018071 scopus 로고
    • PATRICIA - Practical algorithm to retrieve information coded in alphanumeric
    • D. R. Morrison. PATRICIA - Practical Algorithm to Retrieve Information Coded in Alphanumeric. In Journal of the ACM, 15(4) pp514-534, 1968.
    • (1968) Journal of the ACM , vol.15 , Issue.4 , pp. 514-534
    • Morrison, D.R.1
  • 19
    • 0001704377 scopus 로고
    • On-line construction of suffix-trees
    • E. Ukkonen. On-line construction of suffix-trees. In Algorithmica 14 (1995), 249-260, 1995.
    • (1995) Algorithmica , vol.14 , Issue.1995 , pp. 249-260
    • Ukkonen, E.1
  • 21
    • 33745784425 scopus 로고    scopus 로고
    • Last accessed: April 2005
    • http://www.ncbi.nlm.nih.gov - the NCBI web site. Last accessed: April 2005.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.