-
2
-
-
0003516147
-
-
Cambridge University Press
-
Durbin, R., Eddy, S., Krogh, A., Mitchison, G.: Biological Sequence Analysis. Cambridge University Press (1998)
-
(1998)
Biological Sequence Analysis
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
3
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
Peng, C.K., Buldyrev, S.V., Goldberger, A.L., Havlin, S., Sciortino, F., Simons, M., Stanley, H.E.: Long-range correlations in nucleotide sequences. Nature 356 (1992) 168
-
(1992)
Nature
, vol.356
, pp. 168
-
-
Peng, C.K.1
Buldyrev, S.V.2
Goldberger, A.L.3
Havlin, S.4
Sciortino, F.5
Simons, M.6
Stanley, H.E.7
-
4
-
-
84956088098
-
α spectrum in a non-coding DNA sequence
-
α spectrum in a non-coding DNA sequence. Europhys. Lett. 17 (1992) 655
-
(1992)
Europhys. Lett.
, vol.17
, pp. 655
-
-
Li, W.1
Kaneko, K.2
-
5
-
-
0000204878
-
Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
-
Voss, R.F.: Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68 (1992) 3805
-
(1992)
Phys. Rev. Lett.
, vol.68
, pp. 3805
-
-
Voss, R.F.1
-
6
-
-
0000236451
-
Characterizing long-range correlations in DNA sequences from wavelet analysis
-
Arneodo, A., Bacry, E., Graves, P.V., Muzy, J.F.: Characterizing long-range correlations in DNA sequences from wavelet analysis. Phys. Rev. Lett. 74 (1995) 3293
-
(1995)
Phys. Rev. Lett.
, vol.74
, pp. 3293
-
-
Arneodo, A.1
Bacry, E.2
Graves, P.V.3
Muzy, J.F.4
-
7
-
-
0037202374
-
Study of statistical correlations in DNA sequences
-
Bernaola-Galvan, P., Carpena, P., Roman-Roldan, R., Oliver, J.L.: Study of statistical correlations in DNA sequences. Gene 300 (2002) 105
-
(2002)
Gene
, vol.300
, pp. 105
-
-
Bernaola-Galvan, P.1
Carpena, P.2
Roman-Roldan, R.3
Oliver, J.L.4
-
8
-
-
37649027056
-
Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome
-
Li, W., Holste, D.: Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome. Phys. Rev. E 71 (2005) 041910
-
(2005)
Phys. Rev. E
, vol.71
, pp. 041910
-
-
Li, W.1
Holste, D.2
-
9
-
-
11744345465
-
Expansion-modification systems: A model for spatial 1/f spectra
-
Li, W.: Expansion-modification systems: A model for spatial 1/f spectra. Phys. Rev. A 43 (1991) 5240
-
(1991)
Phys. Rev. A
, vol.43
, pp. 5240
-
-
Li, W.1
-
10
-
-
18144379899
-
Solvable sequence evolution models and genomic correlations
-
Messer, P.W., Arndt, P.P., Lässig, M.: Solvable sequence evolution models and genomic correlations. Phys. Rev. Lett. 94 (2005) 138103
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 138103
-
-
Messer, P.W.1
Arndt, P.P.2
Lässig, M.3
-
11
-
-
33745779010
-
Universality of long-range correlations in expansion-randomization systems
-
Messer, P.W., Lässig, M., Arndt, P.F.: Universality of long-range correlations in expansion-randomization systems. J. Stat. Mech. (2005) P10004
-
(2005)
J. Stat. Mech.
-
-
Messer, P.W.1
Lässig, M.2
Arndt, P.F.3
-
12
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
13
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 403
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 403
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin, S., Altschul, S.F.: Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. U.S.A. 87 (1990) 2264
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 2264
-
-
Karlin, S.1
Altschul, S.F.2
-
16
-
-
0000586227
-
Limit distribution of the maximal segmental score among Markov-dependent partial sums
-
Karlin, S., Dembo, A.: Limit distribution of the maximal segmental score among Markov-dependent partial sums. Adv. Appl. Prob. 24 (1992) 113
-
(1992)
Adv. Appl. Prob.
, vol.24
, pp. 113
-
-
Karlin, S.1
Dembo, A.2
-
17
-
-
0027175241
-
Applications and statistics for multiple high-scoring Segments in molecular sequences
-
Karlin, S., Altschul, S.F.: Applications and statistics for multiple high-scoring Segments in molecular sequences. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 5873
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 5873
-
-
Karlin, S.1
Altschul, S.F.2
-
18
-
-
0022431785
-
The statistical distribution of nucleic acid similarities
-
Smith, T.F., Waterman, M.S., Burks, C.: The statistical distribution of nucleic acid similarities. Nucleic Acids Res 13 (1985) 645
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 645
-
-
Smith, T.F.1
Waterman, M.S.2
Burks, C.3
-
19
-
-
0028234758
-
Rapid and accurate estimates of statistical significance for sequence data base searches
-
Waterman, M.S., Vingron, M.: Rapid and accurate estimates of statistical significance for sequence data base searches. Proc. Natl. Acad. Sci.U.S.A. 91 (1994) 4625
-
(1994)
Proc. Natl. Acad. Sci.U.S.A.
, vol.91
, pp. 4625
-
-
Waterman, M.S.1
Vingron, M.2
-
21
-
-
0002064379
-
Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores
-
Mott, R.: Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores. Bull. Math. Biol. 54 (1999) 59
-
(1999)
Bull. Math. Biol.
, vol.54
, pp. 59
-
-
Mott, R.1
-
22
-
-
0033714728
-
An analytic approach to significance assessment in local sequence alignment with gaps
-
Bundschuh, R.: An analytic approach to significance assessment in local sequence alignment with gaps. In: RECOMB2000. (2000) 86
-
(2000)
RECOMB2000
, pp. 86
-
-
Bundschuh, R.1
-
23
-
-
41349114187
-
Asymmetric exclusion process and extremal statistics of random sequences
-
Bundschuh, R.: Asymmetric exclusion process and extremal statistics of random sequences. Phys. Rev. E 65 (2002) 031911
-
(2002)
Phys. Rev. E
, vol.65
, pp. 031911
-
-
Bundschuh, R.1
-
24
-
-
26444458649
-
Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
-
Grossmann, S., Yakir, B.: Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments. Bernoulli 10 (2004) 829
-
(2004)
Bernoulli
, vol.10
, pp. 829
-
-
Grossmann, S.1
Yakir, B.2
-
25
-
-
11844267186
-
Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment
-
Park, Y., Sheetlin, S., Spouge, J.L.: Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment. Journal of Physics A 38 (2005) 97
-
(2005)
Journal of Physics A
, vol.38
, pp. 97
-
-
Park, Y.1
Sheetlin, S.2
Spouge, J.L.3
-
26
-
-
26444490663
-
A practical approach to significance assessment in alignment with gaps
-
Chia, N., Bundschuh, R.: A practical approach to significance assessment in alignment with gaps. In: RECOMB2005. (2005) 474
-
(2005)
RECOMB2005
, pp. 474
-
-
Chia, N.1
Bundschuh, R.2
-
27
-
-
0025878149
-
Amino acid substitution matrices from an information theoretic perspective
-
Altschul, S.F.: Amino acid substitution matrices from an information theoretic perspective. J. Mol. Biol. 219 (1991) 555
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 555
-
-
Altschul, S.F.1
-
28
-
-
4043161624
-
Statistical significance and extremal ensemble of gapped local hybrid alignment
-
Yu, Y.K., Bundschuh, R., Hwa, T.: Statistical significance and extremal ensemble of gapped local hybrid alignment. LNP Vol. 585: Biological Evolution and Statistical Physics 585 (2002) 3
-
(2002)
LNP Vol. 585: Biological Evolution and Statistical Physics
, vol.585
, pp. 3
-
-
Yu, Y.K.1
Bundschuh, R.2
Hwa, T.3
-
29
-
-
33745768521
-
-
http://www.ncbi.nlm.nih.gov/BLAST
-
-
-
|