메뉴 건너뛰기




Volumn 3909 LNBI, Issue , 2006, Pages 426-440

Alignment statistics for long-range correlated genomic sequences

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT; APPROXIMATION THEORY; COMPOSITION; CORRELATION METHODS; DNA SEQUENCES; GENETIC ALGORITHMS; GENETIC ENGINEERING; MATHEMATICAL MODELS; RANDOM PROCESSES; STATISTICAL METHODS;

EID: 33745772144     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11732990_36     Document Type: Conference Paper
Times cited : (3)

References (29)
  • 4
    • 84956088098 scopus 로고
    • α spectrum in a non-coding DNA sequence
    • α spectrum in a non-coding DNA sequence. Europhys. Lett. 17 (1992) 655
    • (1992) Europhys. Lett. , vol.17 , pp. 655
    • Li, W.1    Kaneko, K.2
  • 5
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
    • Voss, R.F.: Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68 (1992) 3805
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805
    • Voss, R.F.1
  • 6
    • 0000236451 scopus 로고
    • Characterizing long-range correlations in DNA sequences from wavelet analysis
    • Arneodo, A., Bacry, E., Graves, P.V., Muzy, J.F.: Characterizing long-range correlations in DNA sequences from wavelet analysis. Phys. Rev. Lett. 74 (1995) 3293
    • (1995) Phys. Rev. Lett. , vol.74 , pp. 3293
    • Arneodo, A.1    Bacry, E.2    Graves, P.V.3    Muzy, J.F.4
  • 8
    • 37649027056 scopus 로고    scopus 로고
    • Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome
    • Li, W., Holste, D.: Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome. Phys. Rev. E 71 (2005) 041910
    • (2005) Phys. Rev. E , vol.71 , pp. 041910
    • Li, W.1    Holste, D.2
  • 9
    • 11744345465 scopus 로고
    • Expansion-modification systems: A model for spatial 1/f spectra
    • Li, W.: Expansion-modification systems: A model for spatial 1/f spectra. Phys. Rev. A 43 (1991) 5240
    • (1991) Phys. Rev. A , vol.43 , pp. 5240
    • Li, W.1
  • 10
    • 18144379899 scopus 로고    scopus 로고
    • Solvable sequence evolution models and genomic correlations
    • Messer, P.W., Arndt, P.P., Lässig, M.: Solvable sequence evolution models and genomic correlations. Phys. Rev. Lett. 94 (2005) 138103
    • (2005) Phys. Rev. Lett. , vol.94 , pp. 138103
    • Messer, P.W.1    Arndt, P.P.2    Lässig, M.3
  • 11
    • 33745779010 scopus 로고    scopus 로고
    • Universality of long-range correlations in expansion-randomization systems
    • Messer, P.W., Lässig, M., Arndt, P.F.: Universality of long-range correlations in expansion-randomization systems. J. Stat. Mech. (2005) P10004
    • (2005) J. Stat. Mech.
    • Messer, P.W.1    Lässig, M.2    Arndt, P.F.3
  • 15
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S., Altschul, S.F.: Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. U.S.A. 87 (1990) 2264
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 2264
    • Karlin, S.1    Altschul, S.F.2
  • 16
    • 0000586227 scopus 로고
    • Limit distribution of the maximal segmental score among Markov-dependent partial sums
    • Karlin, S., Dembo, A.: Limit distribution of the maximal segmental score among Markov-dependent partial sums. Adv. Appl. Prob. 24 (1992) 113
    • (1992) Adv. Appl. Prob. , vol.24 , pp. 113
    • Karlin, S.1    Dembo, A.2
  • 17
    • 0027175241 scopus 로고
    • Applications and statistics for multiple high-scoring Segments in molecular sequences
    • Karlin, S., Altschul, S.F.: Applications and statistics for multiple high-scoring Segments in molecular sequences. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 5873
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 5873
    • Karlin, S.1    Altschul, S.F.2
  • 18
    • 0022431785 scopus 로고
    • The statistical distribution of nucleic acid similarities
    • Smith, T.F., Waterman, M.S., Burks, C.: The statistical distribution of nucleic acid similarities. Nucleic Acids Res 13 (1985) 645
    • (1985) Nucleic Acids Res , vol.13 , pp. 645
    • Smith, T.F.1    Waterman, M.S.2    Burks, C.3
  • 19
    • 0028234758 scopus 로고
    • Rapid and accurate estimates of statistical significance for sequence data base searches
    • Waterman, M.S., Vingron, M.: Rapid and accurate estimates of statistical significance for sequence data base searches. Proc. Natl. Acad. Sci.U.S.A. 91 (1994) 4625
    • (1994) Proc. Natl. Acad. Sci.U.S.A. , vol.91 , pp. 4625
    • Waterman, M.S.1    Vingron, M.2
  • 20
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • Altschul, S.F., Gish, W.: Local alignment statistics. Methods Enzymol. 266 (1996) 460
    • (1996) Methods Enzymol , vol.266 , pp. 460
    • Altschul, S.F.1    Gish, W.2
  • 21
    • 0002064379 scopus 로고    scopus 로고
    • Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores
    • Mott, R.: Maximum likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores. Bull. Math. Biol. 54 (1999) 59
    • (1999) Bull. Math. Biol. , vol.54 , pp. 59
    • Mott, R.1
  • 22
    • 0033714728 scopus 로고    scopus 로고
    • An analytic approach to significance assessment in local sequence alignment with gaps
    • Bundschuh, R.: An analytic approach to significance assessment in local sequence alignment with gaps. In: RECOMB2000. (2000) 86
    • (2000) RECOMB2000 , pp. 86
    • Bundschuh, R.1
  • 23
    • 41349114187 scopus 로고    scopus 로고
    • Asymmetric exclusion process and extremal statistics of random sequences
    • Bundschuh, R.: Asymmetric exclusion process and extremal statistics of random sequences. Phys. Rev. E 65 (2002) 031911
    • (2002) Phys. Rev. E , vol.65 , pp. 031911
    • Bundschuh, R.1
  • 24
    • 26444458649 scopus 로고    scopus 로고
    • Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments
    • Grossmann, S., Yakir, B.: Large deviations for global maxima of independent superadditive processes with negative drift and an application to optimal sequence alignments. Bernoulli 10 (2004) 829
    • (2004) Bernoulli , vol.10 , pp. 829
    • Grossmann, S.1    Yakir, B.2
  • 25
    • 11844267186 scopus 로고    scopus 로고
    • Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment
    • Park, Y., Sheetlin, S., Spouge, J.L.: Accelerated convergence and robust asymptotic regression of the Gumbel scale parameter for gapped sequence alignment. Journal of Physics A 38 (2005) 97
    • (2005) Journal of Physics A , vol.38 , pp. 97
    • Park, Y.1    Sheetlin, S.2    Spouge, J.L.3
  • 26
    • 26444490663 scopus 로고    scopus 로고
    • A practical approach to significance assessment in alignment with gaps
    • Chia, N., Bundschuh, R.: A practical approach to significance assessment in alignment with gaps. In: RECOMB2005. (2005) 474
    • (2005) RECOMB2005 , pp. 474
    • Chia, N.1    Bundschuh, R.2
  • 27
    • 0025878149 scopus 로고
    • Amino acid substitution matrices from an information theoretic perspective
    • Altschul, S.F.: Amino acid substitution matrices from an information theoretic perspective. J. Mol. Biol. 219 (1991) 555
    • (1991) J. Mol. Biol. , vol.219 , pp. 555
    • Altschul, S.F.1
  • 29
    • 33745768521 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/BLAST


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.