-
1
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C., and Lesk A.M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5 (1986) 823-826
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
2
-
-
0033609902
-
Evolution of protein sequences and structures
-
Wood T.C., and Pearson W.R. Evolution of protein sequences and structures. J. Mol. Biol. 291 (1999) 977-995
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 977-995
-
-
Wood, T.C.1
Pearson, W.R.2
-
3
-
-
0026566796
-
Analysis of insertions/deletions in protein structures
-
Pascarella S., and Argos P. Analysis of insertions/deletions in protein structures. J. Mol. Biol. 224 (1992) 461-471
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 461-471
-
-
Pascarella, S.1
Argos, P.2
-
4
-
-
0027485083
-
Comparison of conformational characteristics in structurally similar protein pairs
-
Flores T.P., Orengo C.A., Moss D.S., and Thornton J.M. Comparison of conformational characteristics in structurally similar protein pairs. Protein Sci. 2 (1993) 1811-1826
-
(1993)
Protein Sci.
, vol.2
, pp. 1811-1826
-
-
Flores, T.P.1
Orengo, C.A.2
Moss, D.S.3
Thornton, J.M.4
-
5
-
-
0028081403
-
Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility
-
Russell R.B., and Barton G.J. Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility. J. Mol. Biol. 244 (1994) 332-350
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 332-350
-
-
Russell, R.B.1
Barton, G.J.2
-
6
-
-
0034491039
-
Analysis of conservation and substitutions of secondary structure elements within protein superfamilies
-
Mizuguchi K., and Blundell T. Analysis of conservation and substitutions of secondary structure elements within protein superfamilies. Bioinformatics 16 (2000) 1111-1119
-
(2000)
Bioinformatics
, vol.16
, pp. 1111-1119
-
-
Mizuguchi, K.1
Blundell, T.2
-
7
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
Todd A.E., Orengo C.A., and Thornton J.M. Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol. 307 (2001) 1113-1143
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
8
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins
-
Lesk A.M., and Chothia C. How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol. 136 (1980) 225-270
-
(1980)
J. Mol. Biol.
, vol.136
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
9
-
-
0020429363
-
Evolution of proteins formed by beta-sheets II. The core of the immunoglobulin domains
-
Lesk A.M., and Chothia C. Evolution of proteins formed by beta-sheets II. The core of the immunoglobulin domains. J. Mol. Biol. 160 (1982) 325-342
-
(1982)
J. Mol. Biol.
, vol.160
, pp. 325-342
-
-
Lesk, A.M.1
Chothia, C.2
-
10
-
-
0029790266
-
The lipocalin protein family: structure and function
-
Flower D.R. The lipocalin protein family: structure and function. Biochem. J. 318 (1996) 1-14
-
(1996)
Biochem. J.
, vol.318
, pp. 1-14
-
-
Flower, D.R.1
-
11
-
-
12844276589
-
Lipocalins in drug discovery: from natural ligand-binding proteins to "anticalins"
-
Schlehuber S., and Skerra A. Lipocalins in drug discovery: from natural ligand-binding proteins to "anticalins". Drug Discov. Today 10 (2005) 23-33
-
(2005)
Drug Discov. Today
, vol.10
, pp. 23-33
-
-
Schlehuber, S.1
Skerra, A.2
-
12
-
-
22244450719
-
Protein families and their evolution-a structural perspective
-
Orengo C.A., and Thornton J.M. Protein families and their evolution-a structural perspective. Annu. Rev. Biochem. 74 (2005) 867-900
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 867-900
-
-
Orengo, C.A.1
Thornton, J.M.2
-
13
-
-
0032491184
-
Structural basis for the recognition of carbohydrates by human galectin-7
-
Leonidas D.D., Vatzaki E.H., Vorum H., Celis J.E., Madsen P., and Acharya K.R. Structural basis for the recognition of carbohydrates by human galectin-7. Biochemistry 37 (1998) 13930-13940
-
(1998)
Biochemistry
, vol.37
, pp. 13930-13940
-
-
Leonidas, D.D.1
Vatzaki, E.H.2
Vorum, H.3
Celis, J.E.4
Madsen, P.5
Acharya, K.R.6
-
14
-
-
0034988224
-
The kappa-carrageenase of P. carrageenovora features a tunnel-shaped active site: a novel insight in the evolution of Clan-B glycoside hydrolases
-
Michel G., Chantalat L., Duee E., Barbeyron T., Henrissat B., Kloareg B., and Dideberg O. The kappa-carrageenase of P. carrageenovora features a tunnel-shaped active site: a novel insight in the evolution of Clan-B glycoside hydrolases. Structure. (Camb.) 9 (2001) 513-525
-
(2001)
Structure. (Camb.)
, vol.9
, pp. 513-525
-
-
Michel, G.1
Chantalat, L.2
Duee, E.3
Barbeyron, T.4
Henrissat, B.5
Kloareg, B.6
Dideberg, O.7
-
15
-
-
0027529952
-
Evolution of protein complexity: the blue copper-containing oxidases and related proteins
-
Ryden L.G., and Hunt L.T. Evolution of protein complexity: the blue copper-containing oxidases and related proteins. J. Mol. Evol. 36 (1993) 41-66
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 41-66
-
-
Ryden, L.G.1
Hunt, L.T.2
-
16
-
-
0030975668
-
Structural comparison of cupredoxin domains: domain recycling to construct proteins with novel functions
-
Murphy M.E., Lindley P.F., and Adman E.T. Structural comparison of cupredoxin domains: domain recycling to construct proteins with novel functions. Protein Sci. 6 (1997) 761-770
-
(1997)
Protein Sci.
, vol.6
, pp. 761-770
-
-
Murphy, M.E.1
Lindley, P.F.2
Adman, E.T.3
-
17
-
-
0028774539
-
The three-dimensional structure of glucose 6-phosphate dehydrogenase from Leuconostoc mesenteroides refined at 2.0 Å resolution
-
Rowland P., Basak A.K., Gover S., Levy H.R., and Adams M.J. The three-dimensional structure of glucose 6-phosphate dehydrogenase from Leuconostoc mesenteroides refined at 2.0 Å resolution. Structure 2 (1994) 1073-1087
-
(1994)
Structure
, vol.2
, pp. 1073-1087
-
-
Rowland, P.1
Basak, A.K.2
Gover, S.3
Levy, H.R.4
Adams, M.J.5
-
18
-
-
0028937651
-
Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase
-
Scapin G., Blanchard J.S., and Sacchettini J.C. Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase. Biochemistry 34 (1995) 3502-3512
-
(1995)
Biochemistry
, vol.34
, pp. 3502-3512
-
-
Scapin, G.1
Blanchard, J.S.2
Sacchettini, J.C.3
-
19
-
-
0141669302
-
Automatic inference of protein quaternary structure from crystals
-
Ponstingl H., Kabir T., and Thornton J.M. Automatic inference of protein quaternary structure from crystals. J. Appl. Crystallog. 36 (2003) 1116-1122
-
(2003)
J. Appl. Crystallog.
, vol.36
, pp. 1116-1122
-
-
Ponstingl, H.1
Kabir, T.2
Thornton, J.M.3
-
21
-
-
0026540411
-
The alpha/beta hydrolase fold
-
Ollis D.L., Cheah E., Cygler M., Dijkstra B., Frolow F., Franken S.M., et al. The alpha/beta hydrolase fold. Protein Eng. 5 (1992) 197-211
-
(1992)
Protein Eng.
, vol.5
, pp. 197-211
-
-
Ollis, D.L.1
Cheah, E.2
Cygler, M.3
Dijkstra, B.4
Frolow, F.5
Franken, S.M.6
-
22
-
-
0034058625
-
The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues
-
Bray J.E., Todd A.E., Pearl F.M., Thornton J.M., and Orengo C.A. The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues. Protein Eng. 13 (2000) 153-165
-
(2000)
Protein Eng.
, vol.13
, pp. 153-165
-
-
Bray, J.E.1
Todd, A.E.2
Pearl, F.M.3
Thornton, J.M.4
Orengo, C.A.5
-
23
-
-
0036428739
-
Quantifying the similarities within fold space
-
Harrison A., Pearl F., Mott R., Thornton J., and Orengo C. Quantifying the similarities within fold space. J. Mol. Biol. 323 (2002) 909-926
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 909-926
-
-
Harrison, A.1
Pearl, F.2
Mott, R.3
Thornton, J.4
Orengo, C.5
-
24
-
-
13444272079
-
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
-
Pearl F., Todd A., Sillitoe I., Dibley M., Redfern O., Lewis T., et al. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucl. Acids Res. 33 (2005) D247-D251
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Pearl, F.1
Todd, A.2
Sillitoe, I.3
Dibley, M.4
Redfern, O.5
Lewis, T.6
-
25
-
-
0035783063
-
Fold change in evolution of protein structures
-
Grishin N.V. Fold change in evolution of protein structures. J. Struct. Biol. 134 (2001) 167-185
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 167-185
-
-
Grishin, N.V.1
-
26
-
-
0030777303
-
CATH-a hierarchic classification of protein domain structures
-
Orengo C.A., Michie A.D., Jones S., Jones D.T., Swindells M.B., and Thornton J.M. CATH-a hierarchic classification of protein domain structures. Structure 5 (1997) 1093-1108
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
27
-
-
0024349252
-
Protein structure alignment
-
Taylor W.R., and Orengo C.A. Protein structure alignment. J. Mol. Biol. 208 (1989) 1-22
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 1-22
-
-
Taylor, W.R.1
Orengo, C.A.2
-
28
-
-
0032945191
-
CORA-topological fingerprints for protein structural families
-
Orengo C.A. CORA-topological fingerprints for protein structural families. Protein Sci. 8 (1999) 699-715
-
(1999)
Protein Sci.
, vol.8
, pp. 699-715
-
-
Orengo, C.A.1
-
29
-
-
0141840833
-
Recognizing the fold of a protein structure
-
Harrison A., Pearl F., Sillitoe I., Slidel T., Mott R., Thornton J., and Orengo C. Recognizing the fold of a protein structure. Bioinformatics 19 (2003) 1748-1759
-
(2003)
Bioinformatics
, vol.19
, pp. 1748-1759
-
-
Harrison, A.1
Pearl, F.2
Sillitoe, I.3
Slidel, T.4
Mott, R.5
Thornton, J.6
Orengo, C.7
-
30
-
-
0003772933
-
-
Springer, New York
-
de Berg M., van Kreveld M., Overmars M., and Schwarzkopf O. Computational Geometry Algorithms and Applications (1997), Springer, New York 97-103
-
(1997)
Computational Geometry Algorithms and Applications
, pp. 97-103
-
-
de Berg, M.1
van Kreveld, M.2
Overmars, M.3
Schwarzkopf, O.4
-
31
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., et al. The Universal Protein Resource (UniProt). Nucl. Acids Res. 33 (2005) D154-D159
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
-
32
-
-
22244439883
-
Assessing strategies for improved superfamily recognition
-
Sillitoe I., Dibley M., Bray J., Addou S., and Orengo C. Assessing strategies for improved superfamily recognition. Protein Sci. 14 (2005) 1800-1810
-
(2005)
Protein Sci.
, vol.14
, pp. 1800-1810
-
-
Sillitoe, I.1
Dibley, M.2
Bray, J.3
Addou, S.4
Orengo, C.5
-
33
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
34
-
-
0033963089
-
The ENZYME database in 2000
-
Bairoch A. The ENZYME database in 2000. Nucl. Acids Res. 28 (2000) 304-305
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 304-305
-
-
Bairoch, A.1
-
35
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Harris M.A., Clark J., Ireland A., Lomax J., Ashburner M., Foulger R., et al. The Gene Ontology (GO) database and informatics resource. Nucl. Acids Res. 32 (2004) D258-D261
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
-
36
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M., and Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000) 27-30
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
37
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov R.L., Fedorova N.D., Jackson J.D., Jacobs A.R., Kiryutin B., Koonin E.V., et al. The COG database: an updated version includes eukaryotes. BMC. Bioinformatics 4 (2003) 41
-
(2003)
BMC. Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
-
38
-
-
0035292407
-
Functional information in SWISS-PROT: the basis for large-scale characterisation of protein sequences
-
Apweiler R. Functional information in SWISS-PROT: the basis for large-scale characterisation of protein sequences. Brief. Bioinform. 2 (2001) 9-18
-
(2001)
Brief. Bioinform.
, vol.2
, pp. 9-18
-
-
Apweiler, R.1
|