Normal mode analysis of the horseradish peroxidase collective motions: Correlation with spectroscopically observed heme distortions

Biopolymers

Volumn 82, Issue 4, 2006, Pages 425-429

  Laberge, Monique ^a,b   Kovesi, Istvan ^a   Yonetani, Takashi ^b   Fidy, Judit ^a  

^a SEMMELWEIS UNIVERSITY   (Hungary)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Collective motions; Horseradish peroxidase; Normal mode analysis; Protein fluctuations

Indexed keywords

CALCIUM; CORRELATION METHODS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; PROTEINS; SPECTROSCOPIC ANALYSIS;

COLLECTIVE MOTIONS; HORSERADISH PEROXIDASE; NORMAL MODE ANALYSIS; PROTEIN FLUCTUATIONS;

ENZYMES;

HEME; HORSERADISH PEROXIDASE;

ARTICLE; ENZYME ACTIVITY; MEDICAL LITERATURE; MEDICAL RESEARCH; MOLECULAR DYNAMICS; SPECTROSCOPY;

ALGORITHMS; BINDING SITES; CALCIUM; COMPUTER SIMULATION; CRYSTALLOGRAPHY; HEME; HORSERADISH PEROXIDASE; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; SPECTRUM ANALYSIS;

ARMORACIA RUSTICANA;

EID: 33745713074     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20463     Document Type: Article

References (20)

1. Shiro, Y.; Kurono, M.; Morishima, I. J Biol Chem 1986, 261, 9382-9390.
2. Chattopadhyay, K.; Mazumdar, S. Biochemistry 2000, 39, 263-270.
3. Haschke, R. H.; Friedhoff, J. M. Biochem Biophys Res Comm 1978, 80, 1039-1042.
4. Morishima, I.; Kurono, M.; Shiro, Y. J Biol Chem 1986, 261, 9391-9399.
5. Howes, B. D.; Feis, A.; Raimondi, L.; Indiani, C.; Smulevich, G. J Biol Chem 2001, 276, 40704-40711.
6. Laberge, M.; Szigeti, K.; Fidy, J. Biopolymers 2004, 74, 41-45.
7. Huang, Q.; Szigeti, K.; Fidy, J.; Schweitzer-Stenner, R. J. Phys Chem B 2003, 107, 2822-2830.
8. Laberge, M.; Huang, Q.; Schweitzer-Stenner, R.; Fidy, J. Biophys J 2003, 84, 2542-2552.
9. Huang, Q.; Laberge, M.; Szigeti, K.; Fidy, J.; Schweitzer-Stenner, R. Biopolymers 2003, 72, 241-248.
10. Brooks, B.; Karplus, M. Proc Natl Acad Sci USA 1983, 80, 6571-6575.
11. Case, D. A. Curr Op Struct Biol 1994, 4, 285-290.
12. Noguti T.; Go, N. Nature 1982, 296, 776-778.
13. Go, N.; Noguti, T.; Nishikawa, T. Proc Natl Acad Sci USA 1983, 80, 3696-3700.
14. Hinsen, K.; Thomas, A.; Field, M. J. Proteins 1999, 34, 369-382.
15. Tama, F.; Sanejouand, Y. H. Protein Eng. 2001, 14, 1-6.
16. Krebs, W. G.; Alexandrov, A.; Wilson, C. A.; Echols, N.; Yu, H.; Gerstein, M. Proteins 2002, 48, 682-695.
17. Gajhede, M.; Schuller, D. J.; Henriksen, A.; Smith, A. T.; Poulos, T. L. Nature Struct Biol 1997, 4, 1032-1038.
18. Brooks, B. R.; et al. J Comp Chem 1983, 4, 187-217.
19. Reuter, N.; Hinsen, K.; Lacapere, J.-J. Biophys J 2003, 85, 2186-2197.
20. Frauenfelder, H.; McMahon, B. H.; Fenimore, P. W. Proc Natl Acad Sci USA 2003, 100, 8615-8617.