Towards a Semantic Web for bioinformatics using ontology-based annotation

Proceedings of the Workshop on Enabling Technologies: Infrastructure for Collaborative Enterprises, WETICE

Volumn 2005, Issue , 2005, Pages 3-7

  Lambrix, Patrick ^a  

^a LINKÖPING UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; ONLINE ACCESSIBLE DATA; ONTOLOGY; SEMANTIC WEB;

COMPUTER VISION; INFORMATION RETRIEVAL; ONLINE SYSTEMS; SEMANTICS; WORLD WIDE WEB;

DATA STRUCTURES;

EID: 33745635394     PISSN: 15244547     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/WETICE.2005.58     Document Type: Conference Paper

References (23)

1. F. Baader, D. Calvanese, D. McGuinness, D. Nardi, P. Patel-Schneider. The Description Logic Handbook. Cambridge University Press, 2003.
2. T. Berners-Lee, J. Hendler, O. Lassila. The Semantic Web. Scientific American, May issue, 2001.
3. The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nature Genetics, 25(1):25-29, 2000. http://www.geneontology.org/
4. A. Gómez-Pérez. Ontological Engineering: A state of the Art. Expert Update 2(3):33-43, 1999.
5. R. Jasper, M. Uschold. A Framework for Understanding and Classifying Ontology Applications. Proceedings of the 12th Workshop on Knowledge Acquisition, Modeling and Management, 1999.
6. Knowledge Web Network of Excellence. Deliverable D2.1.1 (State of the art on the sealability of ontology-based technology), 2004. http://knowledgeWeb. semanticWeb.org/
7. Z. Lacroix, H. Murthy, F. Naumann, L. Raschid. Links and Paths through Life Science Data Sources. Proceedings of International Workshop on Data Integration in the Life Sciences, LNCS 2994, pp 203-211, 2004.
8. P. Lambrix. Ontologies in Bioinformatics and Systems Biology. Chapter 8 in Dubitzky, Azuaje (eds) Artificial Intelligence Methods and Tools for Systems Biology, pp 129-146, Springer, 2004. ISBN: 1-4020-2859-8.
9. P. Lambrix, A. Edberg. Evaluation of ontology merging tools in bioinformatics. Proceedings of the Pacific Symposium on Biocomputing, 8:589-600, 2003.
10. P. Lambrix, M. Habbouche, M. Pérez. Evaluation of ontology development tools for bioinformatics. Bioinformatics 19(12):1564-1571, 2003.
11. (Also republished in the 2005 edition of the IMIA Yearbook, pp 547-554.)
12. P. Lambrix, V. Jakoniene. Towards Transparent Access to Multiple Biological Databanks. Proceedings of the Asia-Pacific Bioinformatics Conference, pp 53-60, 2003.
13. P. Lambrix, H. Tan. Merging DAML+OIL Ontologies. Barzdins, Caplinskas (eds) Databases and Information Systems - Selected Papers from the Sixth International Baltic Conference on Databases and Information Systems, pp 249-258, IOS Press, 2005.
14. P. Lambrix, H. Tan. A Framework for Aligning Ontologies. Third Workshop on Principles and Practice of Semantic Web Reasoning, 2005.
15. The online Nucleic Acids Research journal. http://nar.oupjournals.org
16. Open Biomedical Ontologies. http://obo.sourceforge.net/
17. OntoWeb Consortium. Deliverables 1.3 (A survey on ontology tools) and 1.4 (A survey on methodologies for developing, maintaining, evaluating and reengineering ontologies), 2002. http://www.ontoWeb.org
18. REWERSE Network of Excellence. Deliverables A2-D1 (State-of-the-art in Bioinformatics), 2004 and A2-D2 (Usage of bioinformatics tools and identification of information sources), 2005. http://www.rewerse.net
19. Standards and Ontologies for Functional Genomics. http://www.sofg.org
20. R. Stevens, C. Goble, S. Bechhofer. Ontology-based knowledge representation for bioinformatics. Briefings in Bioinformatics 1(4):398-414, 2000.
21. World Wide Web Consortium. Semantic Web. http://www.w3.org/2001/sw/
22. World Wide Web Consortium. Web Services. http://www.w3.org/2002/ws/
23. I. Yeh, P. Karp, N.F. Noy, R. Altman. Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics 19(12):241-248, 2003.