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Volumn 3809 LNAI, Issue , 2005, Pages 756-765

A hidden markov model and immune particle swarm optimization-based algorithm for multiple sequence alignment

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; BENCHMARKING; COMPUTER SIMULATION; DATABASE SYSTEMS; IMMUNOLOGY; MARKOV PROCESSES; OPTIMIZATION; PROBLEM SOLVING; VACCINES;

EID: 33745633096     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11589990_78     Document Type: Conference Paper
Times cited : (9)

References (13)
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    • Zhang, F., Qiao, X. Z., Liu, Z. Y.: Parallel divide and conquer bio-sequence comparison based on Smith-Waterman algorithm. Science in China Series F-Information Sciences, 2004, 47 (2): 221-231.
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    • Zhang, F.1    Qiao, X.Z.2    Liu, Z.Y.3
  • 3
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D. G., Gibson, T. J.: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res, 1994, 22: 4673-4680.
    • (1994) Nucl. Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 4
    • 0027210418 scopus 로고
    • Optimal alignment between groups of sequences and its application to multiple sequence alignment
    • Goto, O.: Optimal alignment between groups of sequences and its application to multiple sequence alignment. Comput. Appl. Biosci., 1993, 9: 361-370.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 361-370
    • Goto, O.1
  • 5
    • 1442286046 scopus 로고    scopus 로고
    • Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing
    • Williams, A., Gilbert, D. R., Westhead, D. R.: Multiple structural alignment for distantly related all beta structures using TOPS pattern discovery and simulated annealing. Protein Engineering, 2003, 16 (12): 913-923.
    • (2003) Protein Engineering , vol.16 , Issue.12 , pp. 913-923
    • Williams, A.1    Gilbert, D.R.2    Westhead, D.R.3
  • 6
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    • Evolving consensus sequence for multiple sequence alignment with a genetic algorithm
    • Shyu, C., Foster, J. A.: Evolving consensus sequence for multiple sequence alignment with a genetic algorithm. Lecture Notes in Computer Science, 2003, 2724: 2313-2324.
    • (2003) Lecture Notes in Computer Science , vol.2724 , pp. 2313-2324
    • Shyu, C.1    Foster, J.A.2
  • 7
    • 0042594474 scopus 로고    scopus 로고
    • Sequence alignment and tree construction using hidden Markov models
    • Edgar, R. C., Sjolander, K.: Sequence alignment and tree construction using hidden Markov models. Bioinformatics, 2003, 19 (11): 1404-1411.
    • (2003) Bioinformatics , vol.19 , Issue.11 , pp. 1404-1411
    • Edgar, R.C.1    Sjolander, K.2
  • 8
    • 33745593176 scopus 로고    scopus 로고
    • Baum-Weich learning in discrete hidden Markov models with linear factorial constraints
    • Otterpohl, J. R.: Baum-Weich learning in discrete hidden Markov models with linear factorial constraints. Lecture Notes in Computer Science, 2002, 2415: 1180-1185.
    • (2002) Lecture Notes in Computer Science , vol.2415 , pp. 1180-1185
    • Otterpohl, J.R.1
  • 11
    • 7044286393 scopus 로고    scopus 로고
    • The scope of receptor editing and its association with autoimmunity
    • Verkoczy, L. K., Martensson, A. S., Nemazee, D.: The scope of receptor editing and its association with autoimmunity. Current opinion in immunology, 2004, 16(6): 808-814.
    • (2004) Current Opinion in Immunology , vol.16 , Issue.6 , pp. 808-814
    • Verkoczy, L.K.1    Martensson, A.S.2    Nemazee, D.3
  • 12
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    • Hidden Markov models for the burst error statistics of Viterbi decoding
    • Chao, C. C., Yao, Y. L.: Hidden Markov models for the burst error statistics of Viterbi decoding. IEEE Transactions on Communications, 1996, 44(12): 1620-1622.
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  • 13
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    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson, J., Plewniak, F., Poch, O.: A comprehensive comparison of multiple sequence alignment programs. Nucl. Acids. Res., 1999, 27 (13): 2682-2690.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.