Biochemical and genetic methods for characterization of [PIN+] prions in yeast

Methods

Volumn 39, Issue 1, 2006, Pages 23-34

  Liebman, Susan W ^a   Bagriantsev, Sviatoslav N ^a   Derkatch, Irina L ^b  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^b NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

PIN+ ; PSI+ ; Amyloid; Cytoduction; Nonsense suppression; Prion; Rnq1p; Sup35p; Yeast

Indexed keywords

AGAROSE; GREEN FLUORESCENT PROTEIN; PIN PROTEIN; PRION PROTEIN; PSI PROTEIN; SUCROSE; UNCLASSIFIED DRUG;

ARTICLE; BIOCHEMISTRY; CENTRIFUGATION; CYTOSOL; ELECTROPHORESIS; GENETIC PROCEDURES; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN VARIANT; YEAST;

BLOTTING, WESTERN; CENTRIFUGATION; ELECTROPHORESIS, AGAR GEL; GREEN FLUORESCENT PROTEINS; PHENOTYPE; PRIONS; PROTEIN CONFORMATION; RECOMBINANT FUSION PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCES CEREVISIAE;

EID: 33745616512     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2006.04.010     Document Type: Article

References (64)

1. Wickner R.B., Edskes H.K., Ross E.D., Pierce M.M., Baxa U., Brachmann A., and Shewmaker F. Annu. Rev. Genet. 38 (2004) 681-707
2. Chernoff Y.O. Curr. Opin. Chem. Biol. 8 (2004) 665-671
3. Derkatch I.L., Bradley M.E., Zhou P., Chernoff Y.O., and Liebman S.W. Genetics 147 (1997) 507-519
4. Lund P.M., and Cox B.S. Genet. Res. 37 (1981) 173-182
5. Tikhodeyev O.N., Getmanova E.V., Tikhomirova V.L., and Inge-Vechtomov S.G. Molecular Mechanisms of Genetic Processes (Russian) (1990), Nauka, Moscow
6. Tuite M.F., Mundy C.R., and Cox B.S. Genetics 98 (1981) 691-711
7. Derkatch I.L., Chernoff Y.O., Kushnirov V.V., Inge-Vechtomov S.G., and Liebman S.W. Genetics 144 (1996) 1375-1386
8. Chernoff Y.O., Derkach I.L., and Inge-Vechtomov S.G. Curr. Genet. 24 (1993) 268-270
9. Wickner R.B. Science 264 (1994) 566-569
10. Cox B.S. Heredity 20 (1965) 505-521
11. Chernoff Y.O., Lindquist S.L., Ono B., Inge-Vechtomov S.G., and Liebman S.W. Science 268 (1995) 880-884
12. Derkatch I.L., Bradley M.E., Masse S.V., Zadorsky S.P., Polozkov G.V., Inge-Vechtomov S.G., and Liebman S.W. EMBO J. 19 (2000) 1942-1952
13. Wickner R.B., Masison D.C., and Edskes H.K. Yeast 11 (1995) 1671-1685
14. Derkatch I.L., Bradley M.E., Hong J.Y., and Liebman S.W. Cell 106 (2001) 171-182
15. Sondheimer N., and Lindquist S. Mol. Cell 5 (2000) 163-172
16. Bradley M.E., Edskes H.K., Hong J.Y., Wickner R.B., and Liebman S.W. Proc. Natl. Acad. Sci. USA 99 Suppl 4 (2002) 16392-16399
17. Bessen R.A., and Marsh R.F. J. Gen. Virol. 73 Pt 2 (1992) 329-334
18. Schlumpberger M., Prusiner S.B., and Herskowitz I. Mol. Cell. Biol. 21 (2001) 7035-7046
19. Bagriantsev S., and Liebman S.W. J. Biol. Chem. 279 (2004) 51042-51048
20. Bradley M.E., and Liebman S.W. Genetics 165 (2003) 1675-1685
21. Osherovich L.Z., and Weissman J.S. Cell 106 (2001) 183-194
22. Kryndushkin D.S., Alexandrov I.M., Ter-Avanesyan M.D., and Kushnirov V.V. J. Biol. Chem. 278 (2003) 49636-49643
23. Bradley M.E., and Liebman S.W. Mol. Microbiol. 51 (2004) 1649-1659
24. Kim K., and Keller III T.C. J. Cell. Biol. 156 (2002) 101-111
25. S.N. Bagriantsev, V.V. Kushnirov, S.W. Liebman, in: R. Wetzel, I. Kheterpal (Eds.), Methods in Enzymology, vol. 412, Academic Press, New York (in press).
26. Derkatch I.L., Uptain S.M., Outeiro T.F., Krishnan R., Lindquist S.L., and Liebman S.W. Proc. Natl. Acad. Sci. USA 101 (2004) 12934-12939
27. Serio T.R., and Lindquist S.L. Annu. Rev. Cell. Dev. Biol. 15 (1999) 661-703
28. Chernoff Y.O., Uptain S.M., and Lindquist S.L. In: Guthrie C., and Fink G.R. (Eds). Methods in Enzymology vol. 351 (2002), Academic Press, New York 499-538
29. Conde J., and Fink G.R. Proc. Natl. Acad. Sci. USA 73 (1976) 3651-3655
30. Kochneva-Pervukhova N.V., Poznyakovski A.I., Smirnov V.N., and Ter-Avanesyan M.D. Curr. Genet. 34 (1998) 146-151
31. Derkatch I.L., Bradley M.E., and Liebman S.W. Proc. Natl. Acad. Sci. USA 95 (1998) 2400-2405
32. Liu J.J., Sondheimer N., and Lindquist S.L. Proc. Natl. Acad. Sci. USA 99 Suppl 4 (2002) 16446-16453
33. Krishnan R., and Lindquist S.L. Nature 435 (2005) 765-772
34. King C.Y. J. Mol. Biol. 307 (2001) 1247-1260
35. Patino M.M., Liu J.J., Glover J.R., and Lindquist S. Science 273 (1996) 622-626
36. Borchsenius A.S., Muller S., Newnam G.P., Inge-Vechtomov S.G., and Chernoff Y.O. Curr. Genet. 49 (2006) 21-29
37. Li L., and Lindquist S. Science 287 (2000) 661-664
38. Zhou P., Derkatch I.L., and Liebman S.W. Mol. Microbiol. 39 (2001) 37-46
39. Kimura Y., Koitabashi S., and Fujita T. Cell. Struct. Funct. 28 (2003) 187-193
40. Dagkesamanskaia A.R., Kushnirov V.V., Paushkin S.V., and Ter-Avanesian M.D. Genetika (Russian) 33 (1997) 610-615
41. Satpute-Krishnan P., and Serio T.R. Nature 437 (2005) 262-265
42. DePace A.H., Santoso A., Hillner P., and Weissman J.S. Cell 93 (1998) 1241-1252
43. Osherovich L.Z., Cox B.S., Tuite M.F., and Weissman J.S. PLoS Biol. 2 (2004) E86
44. Chernoff Y.O., Inge-Vechtomov S.G., Derkach I.L., Ptyushkina M.V., Tarunina O.V., Dagkesamanskaya A.R., and Ter-Avanesyan M.D. Yeast 8 (1992) 489-499
45. Nakayashiki T., Ebihara K., Bannai H., and Nakamura Y. Mol. Cell. 7 (2001) 1121-1130
46. Liebman S.W., and Sherman F. J. Bacteriol. 139 (1979) 1068-1071
47. Singh A., Helms C., and Sherman F. Proc. Natl. Acad. Sci. USA 76 (1979) 1952-1956
48. Ono B., Chernoff Y.O., Ishino-Arao Y., Yamagishi N., Shinoda S., and Inge-Vechtomov S.G. Curr. Genet. 19 (1991) 243-248
49. Cox B.S., Tuite M.F., and McLaughlin C.S. Yeast 4 (1988) 159-178
50. Kulikov V.V., Derkatch I.L., Noskov V.N., Tarunina O.V., Chernoff Y.O., Rogozin I.B., and Pavlov Y.I. Mutat. Res. 473 (2001) 151-161
51. A.L. Manogaran, K.T. Kirkland, S.W. Liebman, Yeast 23 (in press).
52. Inge-Vechtomov S.G., Tikhodeev O.N., and Karpova T.S. Genetika 24 (1988) 1159-1165
53. Cox B.S., Tuite M.F., and Mundy C.J. Genetics 95 (1980) 589-609
54. Bailleul P.A., Newnam G.P., Steenbergen J.N., and Chernoff Y.O. Genetics 153 (1999) 81-94
55. Velichutina I.V., Hong J.Y., Mesecar A.D., Chernoff Y.O., and Liebman S.W. J. Mol. Biol. 305 (2001) 715-727
56. Cox B.S. Heredity 26 (1971) 211-232
57. Liebman S.W., and All-Robyn J.A. Curr. Genet. 8 (1984) 567-573
58. Ter-Avanesyan M.D., Dagkesamanskaya A.R., Kushnirov V.V., and Smirnov V.N. Genetics 137 (1994) 671-676
59. Doel S.M., McCready S.J., Nierras C.R., and Cox B.S. Genetics 137 (1994) 659-670
60. Jung G., Jones G., Wegrzyn R.D., and Masison D.C. Genetics 156 (2000) 559-570
61. Jones G., Song Y., Chung S., and Masison D.C. Mol. Cell. Biol. 24 (2004) 3928-3937
62. Valente L., and Kinzy T.G. Cell. Mol. Life Sci. 60 (2003) 2115-2130
63. Sherman F. In: Guthrie C., and Fink G.R. (Eds). Methods in Enzymology vol. 350 (2002), Academic Press, New York 3-41
64. Ter-Avanesyan M.D., Kushnirov V.V., Dagkesamanskaya A.R., Didichenko S.A., Chernoff Y.O., Inge-Vechtomov S.G., and Smirnov V.N. Mol. Microbiol. 7 (1993) 683-692