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Volumn 93, Issue 2, 2006, Pages 235-254

Bayesian alignment using hierarchical models, with applications in protein bioinformatics

Author keywords

Bioinformatics; Markov chain Monte Carlo; Matching; Poisson process; Protein gel; Protein structure; Shape analysis; Von Mises Fisher distribution

Indexed keywords


EID: 33745607855     PISSN: 00063444     EISSN: 14643510     Source Type: Journal    
DOI: 10.1093/biomet/93.2.235     Document Type: Article
Times cited : (81)

References (24)
  • 2
    • 84976668743 scopus 로고
    • Algorithm 457; finding all cliques of an undirected graph
    • BRON, C. & KERBOSCH, J. (1973). Algorithm 457; finding all cliques of an undirected graph. Commun. ACM 16, 575-7.
    • (1973) Commun. ACM , vol.16 , pp. 575-577
    • Bron, C.1    Kerbosch, J.2
  • 3
    • 0002996864 scopus 로고    scopus 로고
    • Linear assignment problems and extensions
    • Ed. P. Pardalos and D.-Z. Du, Boston: Kluwer Academic Press
    • BURKARD, R. E. & CELA, E. (1999). Linear assignment problems and extensions. In Handbook of Combinatorial Optimization, Vol. 4, Ed. P. Pardalos and D.-Z. Du, pp. 75-149. Boston: Kluwer Academic Press.
    • (1999) Handbook of Combinatorial Optimization , vol.4 , pp. 75-149
    • Burkard, R.E.1    Cela, E.2
  • 4
    • 0025521978 scopus 로고
    • Exact algorithm for the minimal clique problem
    • CARRAGHAN, R. & PARDALOS, P. M. (1990). Exact algorithm for the minimal clique problem. Oper. Res. Lett. 9, 375.
    • (1990) Oper. Res. Lett. , vol.9 , pp. 375
    • Carraghan, R.1    Pardalos, P.M.2
  • 7
    • 0000351907 scopus 로고
    • Orientation statistics
    • DOWNS, T. D. (1972). Orientation statistics. Biometrika 59, 665-76.
    • (1972) Biometrika , vol.59 , pp. 665-676
    • Downs, T.D.1
  • 9
    • 33745598042 scopus 로고    scopus 로고
    • Statistical analysis of unlabelled point sets: Comparing molecules in chemoinformatics
    • To appear
    • DRYDEN, I. L., HIRST, J. D. & MELVILLE, J. L. (2006). Statistical analysis of unlabelled point sets: comparing molecules in chemoinformatics. Biometrics. To appear.
    • (2006) Biometrics
    • Dryden, I.L.1    Hirst, J.D.2    Melville, J.L.3
  • 11
    • 0028230909 scopus 로고
    • Three dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic data base reveals active site similarities: Potential implications to evolution and to protein folding
    • FISCHER, D., WOLFSON, H. J., LIN, S. L. & NUSSINOV, R. (1994). Three dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic data base reveals active site similarities: Potential implications to evolution and to protein folding. Protein Sci. 3, 769-78.
    • (1994) Protein Sci. , vol.3 , pp. 769-778
    • Fischer, D.1    Wolfson, H.J.2    Lin, S.L.3    Nussinov, R.4
  • 13
    • 0242600887 scopus 로고    scopus 로고
    • A primer on Markov chain Monte Carlo
    • Ed. O. E. Barndorff-Nielsen, D. R. Cox and C. Klüppelberg, London: Chapman and Hall
    • GREEN, P. J. (2001). A primer on Markov chain Monte Carlo. In Complex Stochastic Systems, Ed. O. E. Barndorff-Nielsen, D. R. Cox and C. Klüppelberg, pp. 1-62. London: Chapman and Hall.
    • (2001) Complex Stochastic Systems , pp. 1-62
    • Green, P.J.1
  • 14
    • 0026620085 scopus 로고
    • Superimposing two dimensional gels to study genetic variation in malaria parasites
    • HORGAN, G. W., CREASEY, A. & FENTON, B. (1992). Superimposing two dimensional gels to study genetic variation in malaria parasites. Electrophoresis 13, 871-5.
    • (1992) Electrophoresis , vol.13 , pp. 871-875
    • Horgan, G.W.1    Creasey, A.2    Fenton, B.3
  • 15
    • 33745629731 scopus 로고    scopus 로고
    • Matching problems for unlabelled configurations
    • Proceedings of LASR 2004, Ed. R. G. Aykroyd, S. Barber and K. V. Mardia, Leeds: Leeds University Press
    • KENT, J. T., MARDIA, K. V. & TAYLOR, C. C. (2004). Matching problems for unlabelled configurations. In Bioinformatics, Images and Wavelets, Proceedings of LASR 2004, Ed. R. G. Aykroyd, S. Barber and K. V. Mardia, pp. 33-6. Leeds: Leeds University Press.
    • (2004) Bioinformatics, Images and Wavelets , pp. 33-36
    • Kent, J.T.1    Mardia, K.V.2    Taylor, C.C.3
  • 16
    • 0002959565 scopus 로고
    • The von Mises-Fisher distribution in orientation statistics
    • KHATRI, C. G. & MARDIA, K. V. (1977). The von Mises-Fisher distribution in orientation statistics. J. R. Statist, Soc, B 39, 95-106.
    • (1977) J. R. Statist, Soc, B , vol.39 , pp. 95-106
    • Khatri, C.G.1    Mardia, K.V.2
  • 17
    • 0002192615 scopus 로고
    • A combinatorial algorithm for calculating ligand binding
    • KUHL, F. S., CRIPPEN, G. M. & FRIESEN, D. K. (1984). A combinatorial algorithm for calculating ligand binding. J. Comp. Chem. 5, 24-34.
    • (1984) J. Comp. Chem. , vol.5 , pp. 24-34
    • Kuhl, F.S.1    Crippen, G.M.2    Friesen, D.K.3
  • 18
    • 85041988036 scopus 로고
    • Bayesian inference for the von Mises-Fisher distribution
    • MARDIA, K. V. & EL-ATOUM, S. A. M. (1976). Bayesian inference for the von Mises-Fisher distribution. Biometrika 63, 203-5.
    • (1976) Biometrika , vol.63 , pp. 203-205
    • Mardia, K.V.1    El-Atoum, S.A.M.2
  • 19
    • 0041458783 scopus 로고
    • A circle of best fit for spherical data and areas of vulcanism
    • MARDIA, K. V. & GADSDEN, R. J. (1977). A circle of best fit for spherical data and areas of vulcanism. Appl. Statist. 26, 238-45.
    • (1977) Appl. Statist. , vol.26 , pp. 238-245
    • Mardia, K.V.1    Gadsden, R.J.2
  • 21
    • 33745584220 scopus 로고    scopus 로고
    • Structural bioinformatics revisited
    • Proceedings of LASR 2003, Ed. R. G. Aykroyd, S. Barber and K. V. Mardia, Leeds: Leeds University Press
    • MARDIA, K. V., TAYLOR, C. C. & WESTHEAD, D. R. (2003). Structural bioinformatics revisited. In Stochastic Geometry, Biological Structures and Images, Proceedings of LASR 2003, Ed. R. G. Aykroyd, S. Barber and K. V. Mardia, pp. 11-8. Leeds: Leeds University Press.
    • (2003) Stochastic Geometry, Biological Structures and Images , pp. 11-18
    • Mardia, K.V.1    Taylor, C.C.2    Westhead, D.R.3
  • 22
    • 84995182071 scopus 로고
    • Parameterization of an orthogonal matrix in terms of generalized Eulerian angles
    • RAFFENETTI, R. C. & RUEDENBERG, K. (1970). Parameterization of an orthogonal matrix in terms of generalized Eulerian angles. Int. J. Quant. Chem. IIIS, 625-34.
    • (1970) Int. J. Quant. Chem. , vol.IIIS , pp. 625-634
    • Raffenetti, R.C.1    Ruedenberg, K.2
  • 23
    • 18244378520 scopus 로고    scopus 로고
    • On Bayesian analysis of mixtures with an unknown number of components
    • RICHARDSON, S. & GREEN, P. J. (1997). On Bayesian analysis of mixtures with an unknown number of components (with Discussion). J. R. Statist. Soc. B 59, 731-92.
    • (1997) J. R. Statist. Soc. B , vol.59 , pp. 731-792
    • Richardson, S.1    Green, P.J.2
  • 24
    • 0031721203 scopus 로고    scopus 로고
    • Regression analysis of multiple protein structures
    • WU, T. D., SCHMIDLER, S. C., HASTIE, T. & BRUTLAG, G. (1998). Regression analysis of multiple protein structures. J. Comp. Biol. 5, 585-95.
    • (1998) J. Comp. Biol. , vol.5 , pp. 585-595
    • Wu, T.D.1    Schmidler, S.C.2    Hastie, T.3    Brutlag, G.4


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