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Volumn 23, Issue 7, 2006, Pages 1345-1347

Accounting for background nucleotide composition when measuring codon usage bias: Brilliant idea, difficult in practice

Author keywords

Codon bias; Genetic code; Pseudomonas aeruginosa

Indexed keywords

AMINO ACID COMPOSITION; ANIMAL CELL; ARTICLE; CHEMICAL COMPOSITION; CODON USAGE; GENE MUTATION; GENETIC CODE; GENOME ANALYSIS; HOMOZYGOSITY; MEASUREMENT; METHODOLOGY; NONHUMAN; NUCLEOTIDE METABOLISM; NUCLEOTIDE SEQUENCE; PSEUDOMONAS AERUGINOSA;

EID: 33745601642     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl009     Document Type: Article
Times cited : (29)

References (7)
  • 1
    • 17044375830 scopus 로고    scopus 로고
    • Towards a resolution on the inherent methodological weakness of the "effective number of codons used by a gene"
    • Banerjee T, Gupta SK, Ghosh TC. 2005. Towards a resolution on the inherent methodological weakness of the "effective number of codons used by a gene." Biochem Biophys Res Commun 330:1015-8.
    • (2005) Biochem Biophys Res Commun , vol.330 , pp. 1015-1018
    • Banerjee, T.1    Gupta, S.K.2    Ghosh, T.C.3
  • 2
    • 20444415683 scopus 로고    scopus 로고
    • High divergence among Drosophila simulans mitochondrial haplogroups arose in midst of long term purifying selection
    • Dean MD, Ballard JW. 2005. High divergence among Drosophila simulans mitochondrial haplogroups arose in midst of long term purifying selection. Mol Phylogenet Evol 36:328-37.
    • (2005) Mol Phylogenet Evol , vol.36 , pp. 328-337
    • Dean, M.D.1    Ballard, J.W.2
  • 3
    • 33644784817 scopus 로고    scopus 로고
    • Estimating the "effective number of codons": The Wright way of determining codon homozygosity leads to superior estimates
    • Fuglsang A. 2006. Estimating the "effective number of codons": the Wright way of determining codon homozygosity leads to superior estimates. Genetics 172:1301-7.
    • (2006) Genetics , vol.172 , pp. 1301-1307
    • Fuglsang, A.1
  • 4
    • 0036667702 scopus 로고    scopus 로고
    • Accounting for background nucleotide composition when measuring codon usage bias
    • Novembre JA. 2002. Accounting for background nucleotide composition when measuring codon usage bias. Mol Biol Evol 19:1390-4.
    • (2002) Mol Biol Evol , vol.19 , pp. 1390-1394
    • Novembre, J.A.1
  • 5
    • 11244324849 scopus 로고    scopus 로고
    • Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
    • Qin H, Wu WB, Comeron JM, Kreitman M, Li W-H. 2004. Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. Genetics 168:2245-60.
    • (2004) Genetics , vol.168 , pp. 2245-2260
    • Qin, H.1    Wu, W.B.2    Comeron, J.M.3    Kreitman, M.4    Li, W.-H.5
  • 6
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
    • Rocha EP. 2004. Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res 14:2279-86.
    • (2004) Genome Res , vol.14 , pp. 2279-2286
    • Rocha, E.P.1
  • 7
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright F. 1990. The 'effective number of codons' used in a gene. Gene 87:23-9.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.