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Volumn 1091, Issue 1, 2006, Pages 289-299

Gene expression analysis of distinct populations of cells isolated from mouse and human inner ear FFPE tissue using laser capture microdissection - a Technical report based on preliminary findings

Author keywords

Formalin fixation; Gene expression; Human temporal bone; Inner ear; Laser capture microdissection; Protocadherin

Indexed keywords

CELL MARKER; FORMALDEHYDE; MYOSIN; NEUROFILAMENT PROTEIN; PARAFFIN; PROTEIN P27; RNA;

EID: 33745600101     PISSN: 00068993     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.brainres.2006.01.057     Document Type: Article
Times cited : (27)

References (32)
  • 1
    • 0035159856 scopus 로고    scopus 로고
    • The mouse Ames waltzer hearing-loss mutant is caused by mutation of Pcdh15, a novel protocadherin gene
    • Alagramam K.N., Murcia C.L., Kwon H.Y., Pawlowski K.S., Wright C.G., and Woychik R.P. The mouse Ames waltzer hearing-loss mutant is caused by mutation of Pcdh15, a novel protocadherin gene. Nat. Genet. 27 (2001) 99-102
    • (2001) Nat. Genet. , vol.27 , pp. 99-102
    • Alagramam, K.N.1    Murcia, C.L.2    Kwon, H.Y.3    Pawlowski, K.S.4    Wright, C.G.5    Woychik, R.P.6
  • 2
    • 33745632494 scopus 로고    scopus 로고
    • Cancer Research, March 2004. Available at http://www.arctur.com/Research_Portal/images/pdf/aacrposter_gene_expression_foxchase.pdf
  • 3
    • 0032933174 scopus 로고    scopus 로고
    • p27(Kip1) links cell proliferation to morphogenesis in the developing organ of Corti
    • Chen P., and Segil N. p27(Kip1) links cell proliferation to morphogenesis in the developing organ of Corti. Development 126 (1999) 1581-1590
    • (1999) Development , vol.126 , pp. 1581-1590
    • Chen, P.1    Segil, N.2
  • 4
    • 33745608338 scopus 로고    scopus 로고
    • Coudry, R., Meireles, S., Stoyanova, R., Carpino, A., Cooper, H.S., Engstrom, P.F., Clapper, M.L., 2004. Gene expression profiling of formalin-fixed paraffin-embedded archival tissue following laser capture microdissection. Poster presented at American Association for Cancer Research.
  • 5
    • 7444256819 scopus 로고    scopus 로고
    • Selective acquisition of individual cell types in the vestibular periphery for molecular biology studies
    • Cristobal R., Wackym P.A., Cioffi J.A., Erbe C.B., and Popper P. Selective acquisition of individual cell types in the vestibular periphery for molecular biology studies. Otolaryngol. Head Neck Surg. 131 (2004) 590-595
    • (2004) Otolaryngol. Head Neck Surg. , vol.131 , pp. 590-595
    • Cristobal, R.1    Wackym, P.A.2    Cioffi, J.A.3    Erbe, C.B.4    Popper, P.5
  • 6
    • 12344315849 scopus 로고    scopus 로고
    • Assessment of differential gene expression in vestibular epithelial cells types using microarray analysis
    • Cristobal R., Wackym P.A., Cioffi J.A., Erbe C.B., Roche J.P., and Popper P. Assessment of differential gene expression in vestibular epithelial cells types using microarray analysis. Mol. Brain Res. 133 (2005) 19-36
    • (2005) Mol. Brain Res. , vol.133 , pp. 19-36
    • Cristobal, R.1    Wackym, P.A.2    Cioffi, J.A.3    Erbe, C.B.4    Roche, J.P.5    Popper, P.6
  • 10
    • 0035960929 scopus 로고    scopus 로고
    • Genomic structure, alternative splice forms and normal and mutant alleles of cadherin 23 (Cdh23)
    • Di Palma F., Pellegrino R., and Noben-Trauth K. Genomic structure, alternative splice forms and normal and mutant alleles of cadherin 23 (Cdh23). Gene 281 (2001) 31-41
    • (2001) Gene , vol.281 , pp. 31-41
    • Di Palma, F.1    Pellegrino, R.2    Noben-Trauth, K.3
  • 11
    • 0033022067 scopus 로고    scopus 로고
    • Effects of fixation on RNA extraction and amplification from laser capture microdissected tissue
    • Goldsworthy S.M., Stockton P.S., Trempus C.S., Foley J.F., and Maronpot R.R. Effects of fixation on RNA extraction and amplification from laser capture microdissected tissue. Mol. Carcinog. 25 (1999) 86-91
    • (1999) Mol. Carcinog. , vol.25 , pp. 86-91
    • Goldsworthy, S.M.1    Stockton, P.S.2    Trempus, C.S.3    Foley, J.F.4    Maronpot, R.R.5
  • 12
    • 0042190359 scopus 로고    scopus 로고
    • Gene-specific monitoring of T7-based RNA amplification by real-time quantitative PCR
    • Heil S.G., Kluijtmans L.A., Spiegelstein O., Finnell R.H., and Blom H.J. Gene-specific monitoring of T7-based RNA amplification by real-time quantitative PCR. BioTechniques 35 (2003) 502-508
    • (2003) BioTechniques , vol.35 , pp. 502-508
    • Heil, S.G.1    Kluijtmans, L.A.2    Spiegelstein, O.3    Finnell, R.H.4    Blom, H.J.5
  • 14
    • 33745620599 scopus 로고    scopus 로고
    • Li, D., Chu, S., Kunitake, S., MacNair, J., Cheung, E., Ghosh, M., Salunga, R., Tuggle, T., Wang, W., Erlander, M.G., Sgroi, D., Raja, R., Gene expression profiling of microdissected human breast cancer cells from formalin-fixed paraffin-embedded sections using microarrays. Poster presented at Am. Assoc. for Cancer Research, March 2004. Available at http://www.artcur.com/Research_Portal/images/pdf/aacrposter_gene_expression_lding.pdf
  • 15
    • 19544384580 scopus 로고    scopus 로고
    • Estimation of the nerve fiber in the human vestibular endorgans using unbiased stereology and immunohistochemistry
    • Lopez I., Ishiyama G., Tang Y., Frank M., Baloh R.W., and Ishiyama A. Estimation of the nerve fiber in the human vestibular endorgans using unbiased stereology and immunohistochemistry. J. Neurosci. Methods 145 (2005) 37-46
    • (2005) J. Neurosci. Methods , vol.145 , pp. 37-46
    • Lopez, I.1    Ishiyama, G.2    Tang, Y.3    Frank, M.4    Baloh, R.W.5    Ishiyama, A.6
  • 16
    • 27644507804 scopus 로고    scopus 로고
    • Regional estimates of hair cells and supporting cells in the human crista ampullaris
    • Lopez I., Ishiyama G., Tang Y., Tokita J., Baloh R.W., and Ishiyama A. Regional estimates of hair cells and supporting cells in the human crista ampullaris. J. Neurosci. Res. 82 (2005) 421-431
    • (2005) J. Neurosci. Res. , vol.82 , pp. 421-431
    • Lopez, I.1    Ishiyama, G.2    Tang, Y.3    Tokita, J.4    Baloh, R.W.5    Ishiyama, A.6
  • 18
    • 33745616657 scopus 로고    scopus 로고
    • National Temporal Bone Registry website. http://www.tbregistry.org/body/tblabs.htm
  • 19
    • 0029123904 scopus 로고
    • Expression of subtypes NF-L, NF-M and NF-H of neurofilament triplet proteins in the developing rat inner ear
    • Nishizaki K., and Anniko M. Expression of subtypes NF-L, NF-M and NF-H of neurofilament triplet proteins in the developing rat inner ear. ORL J. Otorhinolaryngol. Relat. Spec. 57 (1995) 177-181
    • (1995) ORL J. Otorhinolaryngol. Relat. Spec. , vol.57 , pp. 177-181
    • Nishizaki, K.1    Anniko, M.2
  • 22
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S., and Misener S. (Eds), Humana Press, Totowa, NJ
    • Rozen S., and Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S., and Misener S. (Eds). Bioinformatics Methods and Protocols: Methods in Molecular Biology (2000), Humana Press, Totowa, NJ 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 25
    • 2442672860 scopus 로고    scopus 로고
    • Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments
    • Schneider J., Buness A., Huber W., Volz J., Kioschis P., Hafner M., Poustka A., and Sultmann H. Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments. BMC Genomics 5 (2004) 29
    • (2004) BMC Genomics , vol.5 , pp. 29
    • Schneider, J.1    Buness, A.2    Huber, W.3    Volz, J.4    Kioschis, P.5    Hafner, M.6    Poustka, A.7    Sultmann, H.8
  • 26
    • 0036898005 scopus 로고    scopus 로고
    • Effect of fixatives and tissue processing on the content and integrity of cellular nucleic acids
    • Sinivasan M., Sedmak D., and Jewell S. Effect of fixatives and tissue processing on the content and integrity of cellular nucleic acids. Am. J. Pathol. 161 (2002) 1961-1971
    • (2002) Am. J. Pathol. , vol.161 , pp. 1961-1971
    • Sinivasan, M.1    Sedmak, D.2    Jewell, S.3
  • 27
    • 2442679001 scopus 로고    scopus 로고
    • Comparison of ethanol versus formalin fixation on histology and RNA in laser capture microdissected brain tissues
    • Su J.M., Perlaky L., Li X.N., Leung H.C., Antalffy B., Armstrong D., and Lau C.C. Comparison of ethanol versus formalin fixation on histology and RNA in laser capture microdissected brain tissues. Brain Pathol. 14 (2004) 175-182
    • (2004) Brain Pathol. , vol.14 , pp. 175-182
    • Su, J.M.1    Perlaky, L.2    Li, X.N.3    Leung, H.C.4    Antalffy, B.5    Armstrong, D.6    Lau, C.C.7
  • 28
    • 33745624092 scopus 로고    scopus 로고
    • Taylor, T.B., Evelyn, C., McNair, J., Raja, R., Kunitake, S., 2005. High sensitivity linear amplication for small amounts of RNA. http://www.arctur.com/research_portal/images/pdf/High_sensitivity_poster.pdf
  • 29
    • 0034470033 scopus 로고    scopus 로고
    • Cryoembedding and sectioning of cochleas for immunocytochemistry and in situ hybridization
    • Whitlon D.S., Szakaly R., and Greiner M.A. Cryoembedding and sectioning of cochleas for immunocytochemistry and in situ hybridization. Brain Res. Protoc. 6 (2001) 159-166
    • (2001) Brain Res. Protoc. , vol.6 , pp. 159-166
    • Whitlon, D.S.1    Szakaly, R.2    Greiner, M.A.3
  • 30
    • 0034636553 scopus 로고    scopus 로고
    • Prestin is the motor protein of cochlear outer hair cells
    • Zheng J., Shen W., He D.Z., Long K.B., Madison L.D., and Dallos P. Prestin is the motor protein of cochlear outer hair cells. Nature 405 (2000) 130-133
    • (2000) Nature , vol.405 , pp. 130-133
    • Zheng, J.1    Shen, W.2    He, D.Z.3    Long, K.B.4    Madison, L.D.5    Dallos, P.6
  • 31
    • 0036380563 scopus 로고    scopus 로고
    • Identification of differentially expressed cDNA clones from gerbil cochlear outer hair
    • Zheng J., Long K.B., Robison D.E., He D.Z., Cheng J., and Dallos P. Identification of differentially expressed cDNA clones from gerbil cochlear outer hair. Audiol. Neuro-otol. 7 (2002) 277-288
    • (2002) Audiol. Neuro-otol. , vol.7 , pp. 277-288
    • Zheng, J.1    Long, K.B.2    Robison, D.E.3    He, D.Z.4    Cheng, J.5    Dallos, P.6
  • 32
    • 29344457601 scopus 로고    scopus 로고
    • An evaluation of linear RNA amplification in cDNA microarray gene expression analysis
    • Zhu B., Xu F., and Baba Y. An evaluation of linear RNA amplification in cDNA microarray gene expression analysis. Mol. Genet. Metab. 87 (2006) 71-79
    • (2006) Mol. Genet. Metab. , vol.87 , pp. 71-79
    • Zhu, B.1    Xu, F.2    Baba, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.