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Volumn 124, Issue 3, 2006, Pages 486-495

A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis

Author keywords

Bacillus megaterium; Genomic sequence; Low coverage; Peptide mass fingerprinting; Protein database; Proteomics

Indexed keywords

BACTERIA; ELECTROPHORESIS; GENES; GENETIC ENGINEERING; NUCLEIC ACID SEQUENCES;

EID: 33745514107     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2006.01.033     Document Type: Article
Times cited : (15)

References (17)
  • 2
    • 0032900737 scopus 로고    scopus 로고
    • CRITICA: coding region identification tool invoking comparative analysis
    • Badger J.H., and Olsen G.J. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16 (1999) 512-524
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 512-524
    • Badger, J.H.1    Olsen, G.J.2
  • 4
    • 2342517348 scopus 로고    scopus 로고
    • BAC finishing strategies
    • Bird C., and Grafham D. BAC finishing strategies. Methods Mol. Biol. 255 (2004) 255-277
    • (2004) Methods Mol. Biol. , vol.255 , pp. 255-277
    • Bird, C.1    Grafham, D.2
  • 5
    • 0028917303 scopus 로고
    • Cross-species identification of proteins separated by two-dimensional gel electrophoresis using matrix-assisted laser desorption ionisation/time-of-flight mass spectrometry and amino acid composition
    • Cordwell S.J., Wilkins M.R., Cerpa-Poljak A., Gooley A.A., Duncan M., Williams K.L., and Humphery-Smith I. Cross-species identification of proteins separated by two-dimensional gel electrophoresis using matrix-assisted laser desorption ionisation/time-of-flight mass spectrometry and amino acid composition. Electrophoresis 16 (1995) 438-443
    • (1995) Electrophoresis , vol.16 , pp. 438-443
    • Cordwell, S.J.1    Wilkins, M.R.2    Cerpa-Poljak, A.3    Gooley, A.A.4    Duncan, M.5    Williams, K.L.6    Humphery-Smith, I.7
  • 6
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431 (2004) 931-945
    • (2004) Nature , vol.431 , pp. 931-945
    • International Human Genome Sequencing Consortium1
  • 7
    • 8744239187 scopus 로고    scopus 로고
    • Strategic proteome analysis of Candida magnoliae with an unsequenced genome
    • Kim H.J., Lee D.Y., Lee D.H., Park Y.C., Kweon D.H., Ryu Y.W., and Seo J.H. Strategic proteome analysis of Candida magnoliae with an unsequenced genome. Proteomics 4 (2004) 3588-3599
    • (2004) Proteomics , vol.4 , pp. 3588-3599
    • Kim, H.J.1    Lee, D.Y.2    Lee, D.H.3    Park, Y.C.4    Kweon, D.H.5    Ryu, Y.W.6    Seo, J.H.7
  • 8
    • 12544256176 scopus 로고    scopus 로고
    • Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium
    • Malten M., Hollmann R., Deckwer W.D., and Jahn D. Production and secretion of recombinant Leuconostoc mesenteroides dextransucrase DsrS in Bacillus megaterium. Biotechnol. Bioeng. 89 (2005) 206-218
    • (2005) Biotechnol. Bioeng. , vol.89 , pp. 206-218
    • Malten, M.1    Hollmann, R.2    Deckwer, W.D.3    Jahn, D.4
  • 9
    • 25144465928 scopus 로고    scopus 로고
    • Coexpression of the type I signal peptidase gene sipM increases recombinant protein production and export in Bacillus megaterium MS941
    • Malten M., Nahrstedt H., Meinhardt F., and Jahn D. Coexpression of the type I signal peptidase gene sipM increases recombinant protein production and export in Bacillus megaterium MS941. Biotechnol. Bioeng. 91 (2005) 616-621
    • (2005) Biotechnol. Bioeng. , vol.91 , pp. 616-621
    • Malten, M.1    Nahrstedt, H.2    Meinhardt, F.3    Jahn, D.4
  • 10
    • 2442514028 scopus 로고    scopus 로고
    • Effect of high concentration of Co (II) on Enterobacter liquefaciens strain C-1: a bacterium highly resistant to heavy metals with an unknown genome
    • Marrero J., Gonzalez L.J., Sanchez A., Ayala M., Paz-Lago D., Gonzalez W., Fallarero A., Castellanos-Serra L., and Coto O. Effect of high concentration of Co (II) on Enterobacter liquefaciens strain C-1: a bacterium highly resistant to heavy metals with an unknown genome. Proteomics 4 (2004) 1265-1279
    • (2004) Proteomics , vol.4 , pp. 1265-1279
    • Marrero, J.1    Gonzalez, L.J.2    Sanchez, A.3    Ayala, M.4    Paz-Lago, D.5    Gonzalez, W.6    Fallarero, A.7    Castellanos-Serra, L.8    Coto, O.9
  • 12
    • 12944269065 scopus 로고
    • Rapid identification of proteins by peptide-mass fingerprinting
    • Pappin D.J., Hojrup P., and Bleasby A.J. Rapid identification of proteins by peptide-mass fingerprinting. Curr. Biol. 3 (1993) 327-332
    • (1993) Curr. Biol. , vol.3 , pp. 327-332
    • Pappin, D.J.1    Hojrup, P.2    Bleasby, A.J.3
  • 13
    • 13244265575 scopus 로고    scopus 로고
    • IdentiCS-identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence
    • Sun J., and Zeng A.-P. IdentiCS-identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence. BMC Bioinformatics 5 (2004) 112
    • (2004) BMC Bioinformatics , vol.5 , pp. 112
    • Sun, J.1    Zeng, A.-P.2
  • 14
    • 0028278283 scopus 로고
    • Prime time for Bacillus megaterium
    • Vary P.S. Prime time for Bacillus megaterium. Microbiology 140 Pt 5 (1994) 1001-1013
    • (1994) Microbiology , vol.140 , Issue.PART 5 , pp. 1001-1013
    • Vary, P.S.1
  • 15
    • 3042606331 scopus 로고    scopus 로고
    • Protein identification from two-dimensional gel electrophoresis analysis of Klebsiella pneumonia by combined use of mass spectrometry data and raw genome sequences
    • Wang W., Sun J., Nimtz M., Deckwer W.-D., and Zeng A.-P. Protein identification from two-dimensional gel electrophoresis analysis of Klebsiella pneumonia by combined use of mass spectrometry data and raw genome sequences. Proteome. Sci. 1 (2003) 6
    • (2003) Proteome. Sci. , vol.1 , pp. 6
    • Wang, W.1    Sun, J.2    Nimtz, M.3    Deckwer, W.-D.4    Zeng, A.-P.5
  • 16
    • 26844493677 scopus 로고    scopus 로고
    • Proteome analysis of a recombinant Bacillus megaterium strain during heterologous production of a glucosyltransferase
    • Wang W., Hollmann R., Furch T., Nimtz M., Malten M., Jahn D., and Deckwer W.-D. Proteome analysis of a recombinant Bacillus megaterium strain during heterologous production of a glucosyltransferase. Proteome. Sci. 3 (2005) 4
    • (2005) Proteome. Sci. , vol.3 , pp. 4
    • Wang, W.1    Hollmann, R.2    Furch, T.3    Nimtz, M.4    Malten, M.5    Jahn, D.6    Deckwer, W.-D.7
  • 17
    • 0028919496 scopus 로고
    • Inactivation of the major extracellular protease from Bacillus megaterium DSM319 by gene replacement
    • Wittchen K.D., and Meinhardt F. Inactivation of the major extracellular protease from Bacillus megaterium DSM319 by gene replacement. Appl. Microbiol. Biotechnol. 42 (1995) 871-877
    • (1995) Appl. Microbiol. Biotechnol. , vol.42 , pp. 871-877
    • Wittchen, K.D.1    Meinhardt, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.