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Volumn 101, Issue 1, 2006, Pages 36-43

Capture probe conjugated to paramagnetic nanoparticles for purification of Alexandrium species (Dinophyceae) DNA from environmental samples

Author keywords

5 8S rDNA; Alexandrium; Capture probe; Detection; Paramagnetic nanoparticles; PCR

Indexed keywords

ASSAYS; COST EFFECTIVENESS; DNA; EXTRACTION; NANOPARTICLES; PARAMAGNETISM; POLYMERASE CHAIN REACTION; PURIFICATION; SILICA;

EID: 33745479210     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2006.02952.x     Document Type: Article
Times cited : (23)

References (24)
  • 1
    • 33645120632 scopus 로고    scopus 로고
    • Development of a magnetic capture hybridization-PCR assay for Listeria monocytogenes direct detection in milk samples
    • Amagliani, G., Omiccioli, E., de Campo, A., Bruce, I.J., Brandi, G. Magnani, M. (2006) Development of a magnetic capture hybridization-PCR assay for Listeria monocytogenes direct detection in milk samples. J Appl Microbiol. 100, 375 383.
    • (2006) J Appl Microbiol. , vol.100 , pp. 375-383
    • Amagliani, G.1    Omiccioli, E.2    De Campo, A.3    Bruce, I.J.4    Brandi, G.5    Magnani, M.6
  • 3
    • 18144387570 scopus 로고    scopus 로고
    • Multifunctional magnetite and silica-magnetite nanoparticles: Synthesis, surface activation and application in life sciences
    • Del Campo, A., Sen, T., Lellouche, J.-P. Bruce, I.J. (2005) Multifunctional magnetite and silica-magnetite nanoparticles: synthesis, surface activation and application in life sciences. J Magn Magn Mater 293, 33 40.
    • (2005) J Magn Magn Mater , vol.293 , pp. 33-40
    • Del Campo, A.1    Sen, T.2    Lellouche, J.-P.3    Bruce, I.J.4
  • 4
    • 2342541675 scopus 로고    scopus 로고
    • Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate)
    • Galluzzi, L., Penna, A., Bertozzini, E., Vila, M., Garces, E. Magnani, M. (2004) Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a dinoflagellate). Appl Environ Microbiol 70, 1199 1206.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1199-1206
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Vila, M.4    Garces, E.5    Magnani, M.6
  • 5
    • 27644431885 scopus 로고    scopus 로고
    • Development of a qualitative PCR method for the Alexandrium spp. (Dinophyceae) detection in contaminated mussels (Mytilus galloprovincialis)
    • Galluzzi, L., Penna, A., Bertozzini, E., Giacobbe, M.G., Vila, M., Garcés, E., Prioli, S. Magnani, M. (2005) Development of a qualitative PCR method for the Alexandrium spp. (Dinophyceae) detection in contaminated mussels (Mytilus galloprovincialis). Harmful Algae 4, 973 983.
    • (2005) Harmful Algae , vol.4 , pp. 973-983
    • Galluzzi, L.1    Penna, A.2    Bertozzini, E.3    Giacobbe, M.G.4    Vila, M.5    Garcés, E.6    Prioli, S.7    Magnani, M.8
  • 6
    • 0034814683 scopus 로고    scopus 로고
    • Polymerase chain reaction in detection of Gymnodium mikimotoi and Alexandrium minutum in field samples from Southwest India
    • Godhe, A., Otta, S.K., Rehnstam-Holm, A.-S., Karunasagar, I. Karunasagar, I. (2001) Polymerase chain reaction in detection of Gymnodium mikimotoi and Alexandrium minutum in field samples from Southwest India. Mar Biotechnol 3, 152 162.
    • (2001) Mar Biotechnol , vol.3 , pp. 152-162
    • Godhe, A.1    Otta, S.K.2    Rehnstam-Holm, A.-S.3    Karunasagar, I.4    Karunasagar, I.5
  • 7
    • 0001914227 scopus 로고
    • Culture of phytoplankton for feeding marine invertebrates
    • In. ed. Smith, W.L. Chanley, M.H. pp. New York: Plenum Press.
    • Guillard, R.R.L. (1975) Culture of phytoplankton for feeding marine invertebrates. In Culture of Marine Invertebrate Animals ed. Smith, W.L. Chanley, M.H. pp. 26 60. New York: Plenum Press.
    • (1975) Culture of Marine Invertebrate Animals , pp. 26-60
    • Guillard, R.R.L.1
  • 8
    • 0036745575 scopus 로고    scopus 로고
    • Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium, Dinophysis, and Karenia) from French coasts
    • Guillou, L., Nezan, E., Cueff, V., Erard-Le Denn, E., Cambon-Bonavita, M.A., Gentien, P. Barbier, G. (2002) Genetic diversity and molecular detection of three toxic dinoflagellate genera (Alexandrium, Dinophysis, and Karenia) from French coasts. Protist 153, 223 238.
    • (2002) Protist , vol.153 , pp. 223-238
    • Guillou, L.1    Nezan, E.2    Cueff, V.3    Erard-Le Denn, E.4    Cambon-Bonavita, M.A.5    Gentien, P.6    Barbier, G.7
  • 9
    • 0028598717 scopus 로고
    • Liquid-phase hybridization and capture of hepatitis B virus DNA with magnetic beads and fluorescence detection of PCR product
    • Heermann, K.H., Hagos, Y. Thomssen, R. (1994) Liquid-phase hybridization and capture of hepatitis B virus DNA with magnetic beads and fluorescence detection of PCR product. J Virol Methods 50, 43 57.
    • (1994) J Virol Methods , vol.50 , pp. 43-57
    • Heermann, K.H.1    Hagos, Y.2    Thomssen, R.3
  • 10
    • 0002845413 scopus 로고    scopus 로고
    • Alexandrium minutum Halim and PSP contamination in the Northern Adriatic Sea (Mediterranean Sea)
    • In. ed. Yasumoto, T., Oshima, T. Fukuyo, Y.T. pp. Paris: UNESCO.
    • Honsell, G., Poletti, R., Pompei, M., Sidari, L., Milandri, A., Casadei, C. Viviani, R. (1996) Alexandrium minutum Halim and PSP contamination in the Northern Adriatic Sea (Mediterranean Sea). In Harmful and Toxic Algal Blooms ed. Yasumoto, T., Oshima, T. Fukuyo, Y.T. pp. 77 83. Paris: UNESCO.
    • (1996) Harmful and Toxic Algal Blooms , pp. 77-83
    • Honsell, G.1    Poletti, R.2    Pompei, M.3    Sidari, L.4    Milandri, A.5    Casadei, C.6    Viviani, R.7
  • 11
    • 0029149385 scopus 로고
    • Microscale detection of specific bacterial DNA in soil with a magnetic capture-hybridization and PCR amplification assay
    • Jacobsen, C.S. (1995) Microscale detection of specific bacterial DNA in soil with a magnetic capture-hybridization and PCR amplification assay. Appl Environ Microbiol 61, 3347 3352.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3347-3352
    • Jacobsen, C.S.1
  • 12
    • 0028882071 scopus 로고
    • Increased sensitivity of poliovirus detection in tap water concentrates by reverse transcriptase-polymerase chain reaction
    • Ma, J.F., Gerba, C.P. Pepper, I.L. (1995) Increased sensitivity of poliovirus detection in tap water concentrates by reverse transcriptase- polymerase chain reaction. J Virol Methods 55, 295 302.
    • (1995) J Virol Methods , vol.55 , pp. 295-302
    • Ma, J.F.1    Gerba, C.P.2    Pepper, I.L.3
  • 13
    • 0036306417 scopus 로고    scopus 로고
    • Detection of Tropheryma whipplei DNA in feces by PCR using a target capture method
    • Maibach, R.C., Dutly, F. Altwegg, M. (2002) Detection of Tropheryma whipplei DNA in feces by PCR using a target capture method. J Clin Microbiol 40, 2466 2471.
    • (2002) J Clin Microbiol , vol.40 , pp. 2466-2471
    • Maibach, R.C.1    Dutly, F.2    Altwegg, M.3
  • 15
    • 0028916421 scopus 로고
    • Solid-phase hybridization capture of low-abundance target DNA sequences: Application to the polymerase chain reaction detection of Mycobacterium paratuberculosis and Mycobacterium avium subsp. silvaticum
    • Millar, D.S., Withey, S.J., Tizard, M.L., Ford, J.G. Hermon-Taylor, J. (1995) Solid-phase hybridization capture of low-abundance target DNA sequences: application to the polymerase chain reaction detection of Mycobacterium paratuberculosis and Mycobacterium avium subsp. silvaticum. Anal Biochem 226, 325 330.
    • (1995) Anal Biochem , vol.226 , pp. 325-330
    • Millar, D.S.1    Withey, S.J.2    Tizard, M.L.3    Ford, J.G.4    Hermon-Taylor, J.5
  • 16
    • 0033989455 scopus 로고    scopus 로고
    • Automated specific capture of hepatitis C virus RNA with probes and paramagnetic particle separation
    • Miyachi, H., Masukawa, A., Ohshima, T., Hirose, T., Impraim, C. Ando, Y. (2000) Automated specific capture of hepatitis C virus RNA with probes and paramagnetic particle separation. J Clin Microbiol 38, 18 21.
    • (2000) J Clin Microbiol , vol.38 , pp. 18-21
    • Miyachi, H.1    Masukawa, A.2    Ohshima, T.3    Hirose, T.4    Impraim, C.5    Ando, Y.6
  • 17
    • 0029861894 scopus 로고    scopus 로고
    • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    • Morgenstern, B., Werner, T. Dress, A.W.M. (1996) Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc Natl Acad Sci USA 93, 12098 12103.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 12098-12103
    • Morgenstern, B.1    Werner, T.2    Dress, A.W.M.3
  • 18
    • 0031050812 scopus 로고    scopus 로고
    • Development of a nucleic acid capture probe with reverse transcriptase-polymerase chain reaction to detect poliovirus in groundwater
    • Regan, P.M. Margolin, A.B. (1997) Development of a nucleic acid capture probe with reverse transcriptase-polymerase chain reaction to detect poliovirus in groundwater. J Virol Methods 64, 65 72.
    • (1997) J Virol Methods , vol.64 , pp. 65-72
    • Regan, P.M.1    Margolin, A.B.2
  • 19
    • 0036840289 scopus 로고    scopus 로고
    • Characterization of the rRNA locus of Pfiesteria piscicida and development of standard and quantitative PCR-based detection assays targeted to the nontranscribed spacer
    • Saito, K., Drgon, T., Robledo, J.A., Krupatkina, D.N. Vasta, G.R. (2002) Characterization of the rRNA locus of Pfiesteria piscicida and development of standard and quantitative PCR-based detection assays targeted to the nontranscribed spacer. Appl Environ Microbiol 68, 5394 5407.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5394-5407
    • Saito, K.1    Drgon, T.2    Robledo, J.A.3    Krupatkina, D.N.4    Vasta, G.R.5
  • 20
    • 0242501512 scopus 로고    scopus 로고
    • Ultra-sensitive and specific detection of porcine endogenous retrovirus (PERV) using a sequence-capture real-time PCR approach
    • Shah, C.A., Boni, J., Bisset, L.R., Seebach, J.D. Schupbach, J. (2003) Ultra-sensitive and specific detection of porcine endogenous retrovirus (PERV) using a sequence-capture real-time PCR approach. J Virol Methods 109, 209 216.
    • (2003) J Virol Methods , vol.109 , pp. 209-216
    • Shah, C.A.1    Boni, J.2    Bisset, L.R.3    Seebach, J.D.4    Schupbach, J.5
  • 21
    • 4243107305 scopus 로고    scopus 로고
    • Clinical usefulness of a new hepatitis C virus RNA extraction method using specific capture probe and magnetic particle in hemodialysis patients
    • Tanaka, M., Fujiyama, S., Tanaka, M., Itoh, K., Matsushita, K., Matsushita, K., Matsuyama, K., Kakuda, H. et al. (2004) Clinical usefulness of a new hepatitis C virus RNA extraction method using specific capture probe and magnetic particle in hemodialysis patients. Ther Apher Dial 8, 328 334.
    • (2004) Ther Apher Dial , vol.8 , pp. 328-334
    • Tanaka, M.1    Fujiyama, S.2    Tanaka, M.3    Itoh, K.4    Matsushita, K.5    Matsushita, K.6    Matsuyama, K.7    Kakuda, H.8
  • 22
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 23
    • 0002644592 scopus 로고
    • Preservation and storage
    • In. ed. Sournia, A. pp. Paris: UNESCO.
    • Throndsen, J. (1978) Preservation and storage. In Phytoplankton Manual ed. Sournia, A. pp. 69 74. Paris: UNESCO.
    • (1978) Phytoplankton Manual , pp. 69-74
    • Throndsen, J.1
  • 24
    • 0035017444 scopus 로고    scopus 로고
    • High resolution spatio-temporal detection of HABs in confined waters of the NW Mediterranean
    • Vila, M., Camp, J., Garcés, E., Masó, M. Delgado, M. (2001) High resolution spatio-temporal detection of HABs in confined waters of the NW Mediterranean. J Plankton Res 23, 497 514.
    • (2001) J Plankton Res , vol.23 , pp. 497-514
    • Vila, M.1    Camp, J.2    Garcés, E.3    Masó, M.4    Delgado, M.5


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