A molecular phylogeny of wild and cultivated Echinochloa in East Asia inferred from non-coding region sequences of trnT-L-F

Weed Biology and Management

Volumn 5, Issue 4, 2005, Pages 210-218

  Yamaguchi, Hirofumi ^a   Utano, Aya ^a   Yasuda, Kentaro ^a,c   Yano, Azusa ^b   Soejima, Akiko ^a  

^a Osaka Prefecture University   (Japan)

^b National Institutes for the Humanities International Research Center for Japanese Studies   (Japan)

^c NATIONAL AGRICULTURAL RESEARCH CENTER FOR KYUSHU OKINAWA REGION   (Japan)

Author keywords

Barnyard grass; Barnyard millets; Echinochloa; Indels; Non coding region of trnT L F

Indexed keywords

ECHINOCHLOA; ECHINOCHLOA COLONA; ECHINOCHLOA CRUS-GALLI; ECHINOCHLOA CRUS-PAVONIS; ECHINOCHLOA ESCULENTA; ECHINOCHLOA FRUMENTACEA; ECHINOCHLOA OBTUSIFLORA; ECHINOCHLOA ORYZICOLA; ECHINOCHLOA ORYZOIDES; ECHINOCHLOA STAGNINA;

EID: 33745468637     PISSN: 14446162     EISSN: 14456664     Source Type: Journal    
DOI: 10.1111/j.1445-6664.2005.00185.x     Document Type: Article

References (35)

1. Barrett S.C.H. 1983. Crop mimicry in weeds. Econ. Bot. 37, 255 282.
2. Bor N.L. 1960. Grasses of Burma, Ceylon, India and Pakistan. Pergamon Press, Oxford.
3. Diao Z.-S. 1988. A new species of Echinochloa from China. Acta Bot. Yunnan 10, 371 372.
4. Doyle J.J. Doyle J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11 15.
5. Farris J.S. Kallersjo M. Kluge A.G. Bult C. 1995. Testing significance of incongruence. Cladistics 10, 315 319.
6. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783 791.
7. Hilu K.W. 1994. Evidence from RAPD markers in the evolution of Echinochloa millets (Poaceae). Plant Syst. Evol. 189, 247 257.
8. Hirosue T. Yamasue Y. Yabuno T. 2000. Shattering habit and dormancy of spikelets in a cultivated form of Echinochloa oryzicola recently found in China. Weed Res. 40, 449 456.
9. Komarov V.L. 1934. Flora of the U.S.S.R., Vol. II. Botanicheskii Institut Academii, Nauk, SSSR.
10. Koyama T. 1987. Grasses of Japan and its Neighbouring Regions. Kodansha, Tokyo.
11. Michael P. 1994. Distribution and taxonomy of Echinochloa- A world view with a key to the species occurring in China. In: Proceedings of the 5th Weed Science Conference of China (Kunming, China, 1994). Weed Science Society of China, Kunming, China, 161 166.
12. Michael P. 2001. The taxonomy and distribution of Echinochloa species (barnyard grasses) in the Asian-Pacific region, with a review of pertinent biological studies. In: Proceedings of the 18th Asian-Pacific Weed Science Society Conference (Beijing, China, 28 May-2 June 2001). Standard Press of China, Manila, 57 66.
13. Michishita Y. Yamaguchi H. 2003. Unique forms of weeds and millets in East Asian annual Echinochloa. In: Proceedings of the 18th APWSS Conference (Manila, the Philippines, 17-21 March 2003). The Asian-Pacific Weed Science Society, Manila, 215 219.
14. Nakayama Y. Umemoto S. Yamaguchi H. 1999. [Identification of polyploid groups in the genus Echinochloa.] J. Weed Sci. Tech. 44, 205 217 (in Japanese with English summary).
15. Ohwi J. 1962. [On Japanese Echinochloa.] Acta Phytotax. Geobot. 20, 50 55 (in Japanese).
16. Ohwi J. 1982. [Poaceae (Gramineae).] In: Wild Flowers of Japan I: Herbaceous Plants (including Dwarf Subshrubs) (ed. by Satake Y. Ohwi J. Kitamura S. Watari S. Tominari T.). Heibonsha, Tokyo, 85 126 (in Japanese).
17. Osada T. 1989. [ Illustrated Grasses of Japan.] Heibonsha, Tokyo, 566 577 (in Japanese).
18. Roy S. Simon J.P. Lapointe F.J. 2000. Determination of the origin of the cold-adapted populations of barnyard grass (Echinochloa crus-galli) in eastern North America: a total-evidence approach using RAPD DNA and DNA sequences. Can. J. Bot. 78, 1505 1513.
19. Rutledge J. Talbert R.E. Sneller C.H. 2000. RAPD analysis of genetic variation among propanil-resistant and -susceptible Echinochloa crus-galli populations in Arkansas. Weed Sci. 48, 669 674.
20. Soltis D.E. Soltis P.S. Doyle J.J. 1998. Molecular Systematics of Plants II: DNA Sequencing. Kluwer, the Netherlands.
21. Swofford D.L. 2000. PAUP*: Phylogenetic Analysis using Parsimony (and other Methods), Version 4. Sinauer, Sunderland, MA, USA.
22. Taberlet P. Gielly L. Pautou G. Bouvet J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant. Mol. Biol. 17, 1105 1109.
23. Utano A. Michishita Y. Yamaguchi H. 1999. A barnyard grass mimic to rice plant belongs to Echinochloa oryzicola, which is clearly distinguished from related taxa based on RAPD analysis (Abstract). In: Proceedings of the 17th APWSS Conference (Bangkok, Thailand, 22-27 November 1999). The Asian-Pacific Weed Science Society, Bangkok, 125.
24. Yabuno T. 1961. Oryza sativa and Echinochloa crus-galli var. oryzicola. Seiken Ziho 12, 29 34.
25. Yabuno T. 1962. Cytotaxonomic studies on the two cultivated species and the wild relatives in the genus Echinochloa. Cytologia 27, 296 305.
26. Yabuno T. 1966. Biosystematic study of the genus Echinochloa. Jpn. J. Bot. 19, 277 323.
27. Yabuno T. 1968. Biosystematic studies of Echinochloa stagnina (Retz.) P. Beauv. and E. pyramidalis (Lamk.) Hitch. et Chase. Cytologia 33, 508 519.
28. Yabuno T. 1970. Biosystematic studies of Echinochloa stagnina (Retz.) P. Beauv., cytological relationship between the 12- and 14-ploid strains. Genetica 41, 311 315.
29. Yabuno T. 1983. Biology of Echinochloa species. In: Proceedings of the Conference on Weed Control in Rice (Los Banjos, the Philippines, 31 August-4 September 1981). IRRI, Los Banjos, the Philippines, 307 318.
30. Yabuno T. 1984. A biosystematic study on Echinochloa oryzoides (Ard.) Fritsh. Cytologia 49, 673 678.
31. Yabuno T. 1988. Cytological relationship between Echinochloa obtusiflora Stapf and Kenyan diploid strain of E. pyramidalis (Lamk.) Hitch. et Chase. Cytologia 53, 93 96.
32. Yabuno T. 1996. [Taxonomy and phylogeny of the genus Echinochloa.] In: Natural History of Genus Echinochloa (ed. by Yabuno T. Yamaguchi H.). Daw Elanco/Dow Chemical Company, Tokyo, 16 28 (in Japanese).
33. Yabuno T. 2001. [Taxonomy and phylogeny of the genus Echinochloa.] In: Natural History of Genus Echinochloa, revised edn (ed. by Yabuno T. Yamaguchi H.). Zennokyo Shuppan, Tokyo, 15 30 (in Japanese).
34. Yamaguchi H. Umemoto S. Masanaga Y. 1996. [Studies on barnyard grasses, especially on non-shattering form of Echinochloa oryzicola Vasing., in Yungui plateau, China.] Weed Res. Jpn 41, 111 115 (in Japanese).
35. Yasuda K. Yano A. Nakayama Y. Yamaguchi H. 2002. Molecular identification of Echinochloa oryzicola and E. crus-galli using a polymerase chain reaction-restriction fragment length polymorphism technique. Weed Biol. Manag. 2, 11 17.