Simazine treatment history determines a significant herbicide degradation potential in soils that is not improved by bioaugmentation with Pseudomonas sp. ADP

Journal of Applied Microbiology

Volumn 101, Issue 1, 2006, Pages 26-35

  Moran A C ^a   Muller A ^b   Manzano, M ^a   Gonzalez B ^a  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^b UNIVERSITY OF STUTTGART   (Germany)

Author keywords

Bioremediation; Pseudomonas sp.; Simazine; Terminal restriction fragment length polymorphism

Indexed keywords

BACTERIA; BIODEGRADATION; HERBICIDES; MULTIVARIANT ANALYSIS; SOILS; WEED CONTROL;

BACTERIAL COMMUNITY; BIO-AUGMENTATION; BIODEGRADATION POTENTIALS; DEGRADATION POTENTIAL; EXPOSED TO; PSEUDOMONA SP.; PSEUDOMONAS SP; SIMAZINE; SIMAZINE REMOVALS; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS;

BIOREMEDIATION;

BACTERIAL DNA; HERBICIDE; SIMAZINE;

BACTERIUM; BIODEGRADATION; BIOREMEDIATION; SIMAZINE; SOIL;

ARTICLE; ATZA GENE; ATZC GENE; AVOCADO; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BIOREMEDIATION; CATABOLISM; CONTROLLED STUDY; MICROBIAL DEGRADATION; MICROCOSM; MULTIVARIATE ANALYSIS; NONHUMAN; PLANTATION; PSEUDOMONAS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOIL TREATMENT;

BACTERIA (MICROORGANISMS); PSEUDOMONAS SP. ADP;

EID: 33745460630     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2006.02990.x     Document Type: Article

References (54)

1. Ahn, Y., Sanseverino, J. Sayler, G.S. (1999) Analyses of polycyclic aromatic hydrocarbon-degrading bacteria isolated from contaminated soils. Biodegradation 10, 149 157.
2. Alister, C., López, R. Kogan, M. (2005) Simazine dynamics in a vineyard soil at Casablanca valley, Chile. Pest Manag Sci 61, 1083 1088.
3. Amann, R., Ludwig, W. Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbial Rev 59, 143 169.
4. Barra-Caracciolo, A.B., Grenni, P., Ciccoli, R., Di Landa, G. Cremisini, C. (2005) Simazine biodegradation in soil: analysis of bacterial community structure by in situ hybridization. Pest Manag Sci 61, 863 869.
5. Behki, R., Topp, E., Dick, W. Germon, P. (1993) Metabolism of the herbicide atrazine by Rhodococcus strains. Appl Environ Microbiol 59, 1955 1959.
6. Best, J.A. Weber, J.B. (1974) Disappearance of s-triazines as affected by soil pH using a balance-sheet approach. Weed Sci 22, 364 373.
7. Clarke, K.R. (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18, 117 143.
8. Devers, M., Soulas, G. Martin-Laurent, F. (2004) Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil. J Microbiol Methods 56, 3 15.
9. García-González, V., Govantes, F., Shaw, L.J., Burns, R.G. Santero, E. (2003) Nitrogen control of atrazine utilization in Pseudomonas sp. strain ADP. Appl Environ Microbiol 69, 6987 6993.
10. Ghosh, P.K. Philip, L. (2004) Atrazine degradation in anaerobic environment by a mixed microbial consortium. Water Res 38, 2276 2283.
11. Girvan, M.S., Campbell, C.D., Killham, K., Prosser, J.I. Glover, L.A. (2005) Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 7, 301 313.
12. Griffiths, B.S., Kuan, H.L., Ritz, K., Glover, L.A., McCaig, A.E. Fenwick, C. (2004) The relationship between microbial community structure and functional stability, tested experimentally in an upland pasture soil. Microb Ecol 47, 104 113.
13. Itoh, K., Kanda, R., Sumita, Y., Kim, H., Kamagata, Y., Suyama, K., Yamamoto, H., Hausinger, R.P. et al. (2002) tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in alpha-Proteobacteria. Appl Environ Microbiol 68, 3449 3454.
14. Karns, J.S. (1999) Gene sequence and properties of an s-triazine ring-cleavage enzyme from Pseudomonas sp. strain NRRLB-12227. Appl Environ Microbiol 65, 3512 3517.
15. Kent, A.D., Smith, D.J., Benson, B.J. Triplett, E.W. (2003) A web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl Environ Microbiol 69, 6768 6776.
16. Kröckel, L. Focht, D. (1987) Construction of chlorobenzene-utilizing recombinants by progenitive manifestation of a rare event. Appl Environ Microbiol 53, 2470 2475.
17. Mandelbaum, R.T., Allan, D.L. Wackett, L.P. (1995) Isolation and characterization of a Pseudomonas sp. that mineralizes the s-triazine herbicide atrazine. Appl Environ Microbiol 61, 1451 1457.
18. Marchesi, J.R. Weightman, A.J. (2001) Comparing the dehalogenase gene pool in cultivated alpha-halocarboxylic acid-degrading bacteria with the environmental metagene pool. Appl Environ Microbiol 69, 4375 4382.
19. Martínez, B., Tomkins, J., Wackett, L.P., Wing, R. Sadowsky, M.J. (2001) Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol 183, 5684 5697.
20. Martin-Laurent, F., Piutti, S., Hallet, S., Wagschal, I., Philippot, L., Catroux, G. Soulas, G. (2003) Monitoring of atrazine treatment on soil bacterial, fungal and atrazine-degrading communities by quantitative competitive PCR. Pest Manag Sci 59, 259 268.
21. Mulbry, W.W., Zhu, H., Tour, S.M. Topp, E. (2002) The triazine hydrolase gene trzN from Nocardioides sp. strain C190: cloning and construction of gene-specific primers. FEMS Microbiol Lett 206, 75 79.
22. Newcombe, D.A. Crowley, D.E. (1999) Bioremediation of atrazine-contaminated soil by repeated applications of atrazine-degrading bacteria. Appl Microbiol Biotechnol 51, 877 882.
23. Pesaro, M., Nicollier, G., Zeyer, J. Widmer, F. (2004) Impact of soil drying-rewetting stress on microbial communities and activities and on degradation of two crop protection products. Appl Environ Microbiol 70, 2577 2587.
24. Piutti, S., Semon, E., Landry, D., Hartmann, A., Dousset, S., Lichtfouse, E., Topp, E., Soulas, G. et al. (2003) Isolation and characterization of Nocardioides sp. SP12, an atrazine-degrading bacterial strain possessing the gene trzN from bulk- and maize rhizosphere soil. FEMS Microbiol Lett 221, 111 117.
25. Ralebitso, T.K., Senior, E. van Verseveld, H.W. (2002) Microbial aspects of atrazine degradation in natural environments. Biodegradation 13, 11 19.
26. Rees, G.N., Baldwin, D.S., Watson, G.O., Perryman, S. Nielsen, D.L. (2004) Ordination and significance testing of microbial community composition derived from terminal restriction fragment length polymorphisms: application of multivariate statistics. Antonie Van Leeuwenhoek 86, 339 347.
27. Rhine, E.D., Fuhrmann, J.J. Radosevich, M. (2003) Microbial community responses to atrazine exposure and nutrient availability: linking degradation capacity to community structure. Microb Ecol 46, 145 160.
28. Rousseaux, S., Soulas, G. Hartman, A. (2001) Isolation and characterization of new Gram-negative and Gram-positive atrazine degrading bacteria from different French soils. FEMS Microbiol Ecol 36, 211 222.
29. Rousseaux, S., Soulas, G. Hartmann, A. (2002) Plasmid localization if atrazine-degrading genes in newly described Chelatobacter and Arthrobacter strains. FEMS Microbiol Ecol 41, 69 85.
30. Runes, H.B., Jenkins, J.J., Moore, J.A., Bottomley, P.J. Wilson, B.D. (2003) Treatment of atrazine in nursery irrigation runoff by a constructed wetland. Water Res 37, 539 550.
31. Sajjaphan, K., Shapir, N., Wackett, L.P., Palmer, M., Blackmon, B., Tomkins, J. Sadowsky, M.J. (2004) Arthrobacter aurescens TC1 atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coli. Appl Environ Microbiol 70, 4402 4407.
32. Sánchez, M., Garbi, C., Martínez-Alvarez, R., Ortiz, L.T., Allende, J.L. Martin, M. (2005) Klebsiella planticola strain DSZ mineralizes simazine: physiological adaptations involved in the process. Appl Microbiol Biotechnol 66, 589 596.
33. Santiago-Mora, R., Martin-Laurent, F., de Prado, R. Franco, A.R. (2005) Degradation of simazine by microorganisms isolated from soils of Spanish olive fields. Pest Manag Sci 61, 917 921.
34. Seffernick, J.L. Wackett, L.P. (2001) Rapid evolution of bacterial catabolic enzymes: a case study with atrazine chlorohydrolase. Biochemistry 40, 12747 12753.
35. Seffernick, J.L., de Souza, M.L., Sadowsky, M.J. Wackett, L.P. (2001) Melamine deaminase and atrazine chlorohydrolase: 98 percent identical but functionally different. J Bacteriol 183, 2405 2410.
36. Shao, Z.Q., Seffens, W., Mulbry, W. Behki, R.M. (1995) Cloning and expression of the s-triazine hydrolase gene (trzA) from Rhodococcus corallinus and development of Rhodococcus recombinant strains capable of dealkylating and dechlorinating the herbicide atrazine. J Bacteriol 177, 5748 5755.
37. Shapir, N., Goux, S., Mandelbaum, R.T. Pussemier, I. (2000) The potential of soil microorganisms to mineralize atrazine as predicted by MCH-PCR followed by nested PCR. Can J Microbiol 46, 425 432.
38. Silva, E., Fialho, A.M., Sa-Correia, I., Burns, R.G. Shaw, L.J. (2004) Combined bioaugmentation and biostimulation to cleanup soil contaminated with high concentrations of atrazine. Environ Sci Technol 38, 632 637.
39. Singh, P., Suri, C.R. Cameotra, S.S. (2004) Isolation of a member of Acinetobacter species involved in atrazine degradation. Biochem Biophys Res Commun 317, 697 702.
40. de Souza, M.L., Sadowsky, M.J. Wackett, L.P. (1996) Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization. J Bacteriol 178, 4894 4900.
41. de Souza, M.L., Seffernick, J., Martinez, B., Sadowsky, M.J. Wackett, L.P. (1998a) The atrazine catabolism genes atzABC are widespread and highly conserved. J Bacteriol 180, 1951 1954.
42. de Souza, M.L., Wackett, L.P. Sadowsky, M.J. (1998b). The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP. Appl Environ Microbiol 64, 2323 2326.
43. Strandberg, M.T. Scott-Fordsmand, J.J. (2002) Field effects of simazine at lower trophic levels - a review. Sci Total Environ 296, 117 137.
44. Stroetmann, I., Kampfer, P. Dott, W. (1994) The efficiency of sterilization methods for different soils. Zentralbl Hyg Umweltmed 195, 111 120.
45. Strong, L.C., McTavish, H., Sadowsky, M.J. Wackett, L.P. (2000) Field-scale remediation of atrazine-contaminated soil using recombinant Escherichia coli expressing atrazine chlorohydrolase. Environ Microbiol 2, 91 98.
46. Struthers, J.K., Jayachandran, K. Moorman, T.B. (1998) Biodegradation of atrazine by Agrobacterium radiobacter J14a and use of this strain in bioremediation of contaminated soil. Appl Environ Microbiol 64, 3368 3375.
47. Top, E.M., Holben, W.E. Forney, L.J. (1995) Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Appl Environ Microbiol 61, 1691 1698.
48. Topp, E., Zhu, H., Nour, S.M., Houot, S., Lewis, M. Cuppels, D. (2000) Characterization of an atrazine-degrading Pseudaminobacter sp. isolated from Canadian and French agricultural soils. Appl Environ Microbiol 66, 2773 2782.
49. Tuxen, N., de Lipthay, J.R., Albrechtsen, H.J, Aamand, J. Bjerg, P.L. (2002) Effect of exposure history on microbial herbicide degradation in an aerobic aquifer affected by a point source. Environ Sci Technol 36, 2205 2212.
50. Wackett, L.P., Sadowsky, M.J., Martinez, B. Shapir, N. (2002) Biodegradation of atrazine and related s-triazine compounds: from enzymes to field studies. Appl Microbiol Biotechnol 58, 39 45.
51. Watanabe, K., Futamata, H. Harayama, S. (2002) Understanding the diversity in catabolic potential of microorganisms for the development of bioremediation strategies. Antonie Van Leeuwenhoek 81, 655 663.
52. Willems, A., Goor, M., Thielemans, S., Gillis, M., Kersters, K. De Ley, J. (1992) Transfer of several phytopathogenic Pseudomonas species to Acidovorax as Acidovorax avenae subsp. avenae subsp. nov., comb. nov., Acidovorax avenae subsp. citrulli, Acidovorax avenae subsp. cattleyae, and Acidovorax konjaci. Int J Syst Bacteriol 42, 107 119.
53. Yanze-Kontchou, C. Gschwind, N. (1994) Mineralization of the herbicide atrazine as a carbon source by a Pseudomonas strain. Appl Environ Microbiol 60, 4297 4302.
54. Zhao, S., Arthur, L.E. Coats, J.R. (2003) Influence of microbial inoculation (Pseudomonas sp. strain ADP), the enzyme atrazine chlorohydrolase, and vegetation on the degradation of atrazine and metolachlor in soil. J Agric Food Chem 51, 3043 3048.