-
2
-
-
0000593794
-
-
(b) De Grado, W. F.; Raleigh, D. P.; Handel, T. Curr. Opin. Struct. Biol. 1991, 1, 984-993.
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 984-993
-
-
De Grado, W.F.1
Raleigh, D.P.2
Handel, T.3
-
5
-
-
0032863980
-
-
(e) Tuchscherer, G.; Grell, D.; Mathieu, M.; Mutter, M. J. Peptide Res. 1999, 54, 185-194.
-
(1999)
J. Peptide Res.
, vol.54
, pp. 185-194
-
-
Tuchscherer, G.1
Grell, D.2
Mathieu, M.3
Mutter, M.4
-
6
-
-
0035471131
-
-
(f) Venkatraman, J.; Shankaramma, S. C.; Balaram, P. Chem. Rev. 2001, 101, 3131-3152
-
(2001)
Chem. Rev.
, vol.101
, pp. 3131-3152
-
-
Venkatraman, J.1
Shankaramma, S.C.2
Balaram, P.3
-
8
-
-
0021779081
-
-
(b) Rose, G. D.; Gierasch, L. M.; Smith, J. A. Adv. Protein Chem. 1985, 37, 1-109.
-
(1985)
Adv. Protein Chem.
, vol.37
, pp. 1-109
-
-
Rose, G.D.1
Gierasch, L.M.2
Smith, J.A.3
-
9
-
-
0001810769
-
-
Fasman, G. D., Ed.; Plenum Press: New York
-
(c) Richardson, J. S.; Richardson, D. C. In Prediction of Protein Structure and the principles of Protein Conformation; Fasman, G. D., Ed.; Plenum Press: New York, 1989; pp 1-98.
-
(1989)
Prediction of Protein Structure and the Principles of Protein Conformation
, pp. 1-98
-
-
Richardson, J.S.1
Richardson, D.C.2
-
11
-
-
0024391832
-
-
(b) Sibanda, B. L.; Blundell, T. L.; Thornton, J. M. J. Mol. Biol. 1989, 206, 759-777.
-
(1989)
J. Mol. Biol.
, vol.206
, pp. 759-777
-
-
Sibanda, B.L.1
Blundell, T.L.2
Thornton, J.M.3
-
13
-
-
0031455857
-
-
(d) Gunasekaran, K.; Ramakrishnan, C.; Balaram, P. Protein Eng. 1997, 10, 1131-1141.
-
(1997)
Protein Eng.
, vol.10
, pp. 1131-1141
-
-
Gunasekaran, K.1
Ramakrishnan, C.2
Balaram, P.3
-
19
-
-
0032545165
-
-
i+2 = 0°). The enantiomeric ("prime" turns) type I′/III′ and II′ are obtained by inverting the sign of the torsion angles. Type 1 and III turns need not be considered separately as they are structurally similar. The key difference between type I and Type II turn is the orientation of the central peptide unit, the amide bond between residues i+1 and i+2. which under goes a flip during a type 1-type 11 transition. (Gunasekaran, K.; Gomathi, L.; Ramakrishnan, C.; Chandrasekhar, J.; Balaram, P. J. Mol. Biol. 1998, 284, 1505-1516).
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1505-1516
-
-
Gunasekaran, K.1
Gomathi, L.2
Ramakrishnan, C.3
Chandrasekhar, J.4
Balaram, P.5
-
20
-
-
33745338136
-
-
note
-
(f) The term "folding nucleus" is often used implicitly assuming that formation of the short-range structural feature (example β-turn) precedes the generation of the larger structural elements (helix or hairpin). Most studies in the area of designed peptides examine the final folded structure and thus provide no direct evidence for the kinetic pathway of folding.
-
-
-
-
21
-
-
33745371707
-
-
(a) Shamala, N.; Nagaraj, R.; Balaram, P. Biochem. Biophys. Res. Commun. 1977, 79, 291-298.
-
(1977)
Biochem. Biophys. Res. Commun.
, vol.79
, pp. 291-298
-
-
Shamala, N.1
Nagaraj, R.2
Balaram, P.3
-
22
-
-
0018404823
-
-
(b) Nagaraj, R.; Shamala, N.; Balaram, P. J. Am. Chem. Soc. 1979, 101, 16-20.
-
(1979)
J. Am. Chem. Soc.
, vol.101
, pp. 16-20
-
-
Nagaraj, R.1
Shamala, N.2
Balaram, P.3
-
28
-
-
0032488824
-
-
(d) Gunasekaran, K.; Nagarajaram, H. A.; Ramakrishnan, C.; Balaram, P. J. Mol. Biol. 1998, 275, 917-932.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 917-932
-
-
Gunasekaran, K.1
Nagarajaram, H.A.2
Ramakrishnan, C.3
Balaram, P.4
-
30
-
-
0033570275
-
-
Eichinger, A.; Beisel, H. G.; Jacob, U.; Huber, R.; Medrano, F. J.; Banbula, A.; Potempa, J.; Travis, J.; Bode, W. EMBO J. 1999, 18, 5453-5462.
-
(1999)
EMBO J.
, vol.18
, pp. 5453-5462
-
-
Eichinger, A.1
Beisel, H.G.2
Jacob, U.3
Huber, R.4
Medrano, F.J.5
Banbula, A.6
Potempa, J.7
Travis, J.8
Bode, W.9
-
31
-
-
0007912674
-
-
Nair, C. M. K.; Vijayan, M.; Venkatachalapathi, Y. V.; Balaram, P. J. Chem. Soc., Chem. Commun. 1979, 1183-1184.
-
(1979)
J. Chem. Soc., Chem. Commun.
, pp. 1183-1184
-
-
Nair, C.M.K.1
Vijayan, M.2
Venkatachalapathi, Y.V.3
Balaram, P.4
-
33
-
-
0013650002
-
-
Srinivasan, R., Sarma, R. H., Eds.: Adenine Press: New York
-
(b) Prasad, B. V. V.; Balaram, P. In Conformation in Biology; Srinivasan, R., Sarma, R. H., Eds.: Adenine Press: New York, pp 133-140, 1982.
-
(1982)
Conformation in Biology
, pp. 133-140
-
-
Prasad, B.V.V.1
Balaram, P.2
-
36
-
-
0037021328
-
-
(b) Shankaramma, S. C.; Athanassiou, Z.; Zerbe, O.; Moehle, K.; Mouton, C.; Bernardini, F.; Vrijbloed, J. W.; Obrecht, D.; Robinson, J. A. Chembiochem 2002, 3, 1126-1133.
-
(2002)
Chembiochem
, vol.3
, pp. 1126-1133
-
-
Shankaramma, S.C.1
Athanassiou, Z.2
Zerbe, O.3
Moehle, K.4
Mouton, C.5
Bernardini, F.6
Vrijbloed, J.W.7
Obrecht, D.8
Robinson, J.A.9
-
37
-
-
13944259333
-
-
(c) Robinson, J. A.; Shankaramma, S. C.; Jetter, P.; Kienzl, U.; Schwendener, R. A.; Vrijbloed, J. W.; Obrecht, D. Bioorg. Med. Chem. 2005, 13, 2055-2064.
-
(2005)
Bioorg. Med. Chem.
, vol.13
, pp. 2055-2064
-
-
Robinson, J.A.1
Shankaramma, S.C.2
Jetter, P.3
Kienzl, U.4
Schwendener, R.A.5
Vrijbloed, J.W.6
Obrecht, D.7
-
39
-
-
33644655489
-
-
(e) Rai, R.; Raghothama, S.; Balaram, P. J. Am. Chem. Soc. 2006, 128, 2675-2681.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 2675-2681
-
-
Rai, R.1
Raghothama, S.2
Balaram, P.3
-
40
-
-
33745355296
-
-
note
-
LPro-Leu-Phe-Val-OMe (unpublished).
-
-
-
-
41
-
-
0028972051
-
-
(a) Awasthi, S. K.; Raghothama, S.; Balaram, P. Biochem. Biophys. Res. Commun. 1995, 216, 375-381.
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.216
, pp. 375-381
-
-
Awasthi, S.K.1
Raghothama, S.2
Balaram, P.3
-
42
-
-
0029758829
-
-
(b) Karle, I. L.; Awasthi, S. K.; Balaram, P. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 8189-8193.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 8189-8193
-
-
Karle, I.L.1
Awasthi, S.K.2
Balaram, P.3
-
43
-
-
0029931671
-
-
(c) Haque, T. S.; Little, J. C.; Gellman, S. H. J. Am. Chem. Soc. 1996, 118, 6975-6985.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 6975-6985
-
-
Haque, T.S.1
Little, J.C.2
Gellman, S.H.3
-
45
-
-
0346837918
-
-
(e) Raghothama, S. R.; Awasthi, S. K.; Balaram, P. J. Chem. Soc., Perkin Trans 2. 1998, 137-143.
-
(1998)
J. Chem. Soc., Perkin Trans 2.
, pp. 137-143
-
-
Raghothama, S.R.1
Awasthi, S.K.2
Balaram, P.3
-
46
-
-
0034600777
-
-
(f) Espinosa, J. F.; Gellman, S. H. Angew. Chem., Int. Ed. 2000, 39, 2330-2333.
-
(2000)
Angew. Chem., Int. Ed.
, vol.39
, pp. 2330-2333
-
-
Espinosa, J.F.1
Gellman, S.H.2
-
47
-
-
0035957390
-
-
(g) Karle, I. L.; Gopi, H. N.; Balaram, P. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3716-3719.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 3716-3719
-
-
Karle, I.L.1
Gopi, H.N.2
Balaram, P.3
-
48
-
-
0037117523
-
-
(h) Karle, I. L.; Gopi, H. N.; Balaram, P. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 5160-5164.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5160-5164
-
-
Karle, I.L.1
Gopi, H.N.2
Balaram, P.3
-
49
-
-
1242307810
-
-
(i) Aravinda, S.; Harini, V. V.; Shamala, N.; Das, C.; Balaram, P. Biochemistry 2004, 43, 1832-1846.
-
(2004)
Biochemistry
, vol.43
, pp. 1832-1846
-
-
Aravinda, S.1
Harini, V.V.2
Shamala, N.3
Das, C.4
Balaram, P.5
-
50
-
-
20444492444
-
-
(j) Harini, V. V.; Aravinda, S.; Rai, R.; Shamala, N.; Balaram, P. Chem.-Eur. J. 2005, 11, 3609-3620.
-
(2005)
Chem.-Eur. J.
, vol.11
, pp. 3609-3620
-
-
Harini, V.V.1
Aravinda, S.2
Rai, R.3
Shamala, N.4
Balaram, P.5
-
51
-
-
28444485044
-
-
(k) Lamm, M. S.; Rajagopal, K.; Schneider, J. P.; Pochan, D. J. J. Am. Chem. Soc. 2005, 127, 16692-16700.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 16692-16700
-
-
Lamm, M.S.1
Rajagopal, K.2
Schneider, J.P.3
Pochan, D.J.4
-
52
-
-
28844449157
-
-
(l) Haines, L. A.; Rajagopal, K.; Ozbas, B.; Salick, D. A.; Pochan, D. J.; Schneider, J. P. J. Am. Chem. Soc. 2005, 127, 17025-17029.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 17025-17029
-
-
Haines, L.A.1
Rajagopal, K.2
Ozbas, B.3
Salick, D.A.4
Pochan, D.J.5
Schneider, J.P.6
-
53
-
-
0026209013
-
-
(a) Kemp, D. S.; Boyd, J. G.; Muendel, C. C. Nature 1991, 552, 451-454.
-
(1991)
Nature
, vol.552
, pp. 451-454
-
-
Kemp, D.S.1
Boyd, J.G.2
Muendel, C.C.3
-
54
-
-
0001411436
-
-
(b) Kemp, D. S.; Curran, T. P.; Boyd, J. G.; Allen, T. J. J. Org. Chem. 1991, 56, 6683-6697.
-
(1991)
J. Org. Chem.
, vol.56
, pp. 6683-6697
-
-
Kemp, D.S.1
Curran, T.P.2
Boyd, J.G.3
Allen, T.J.4
-
55
-
-
0001491679
-
-
(c) Kemp, D. S.; Curran, T. P.; Davis, W. M.; Boyd, J. G.; Muendel, C. J. Org. Chem. 1991, 56, 6672-6682.
-
(1991)
J. Org. Chem.
, vol.56
, pp. 6672-6682
-
-
Kemp, D.S.1
Curran, T.P.2
Davis, W.M.3
Boyd, J.G.4
Muendel, C.5
-
56
-
-
8444252170
-
-
(d) Job, G. E.; Heitmann, B.; Kennedy, R. J.; Walker, S. M.; Kemp, D. S. Angew. Chem., Int. Ed. 2004, 43, 5649-5651.
-
(2004)
Angew. Chem., Int. Ed.
, vol.43
, pp. 5649-5651
-
-
Job, G.E.1
Heitmann, B.2
Kennedy, R.J.3
Walker, S.M.4
Kemp, D.S.5
-
57
-
-
13644250682
-
-
(e) Heitmann, B.; Job, G. E.; Kennedy, R. J.; Walker, S. M.; Kemp, D. S. J. Am. Chem. Soc. 2005, 127, 1690-1704.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 1690-1704
-
-
Heitmann, B.1
Job, G.E.2
Kennedy, R.J.3
Walker, S.M.4
Kemp, D.S.5
-
58
-
-
0030879441
-
-
Austin, R. E.; Maplestone, R. A.; Sefler, A. M.; Liu, K.; Hruzewicz, W. N.; Liu, C. W.; Cho, H. S.; Wemmer, D. E.; Bartlett, P. A. J. Am. Chem. Soc. 1997, 119, 6461-6472.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 6461-6472
-
-
Austin, R.E.1
Maplestone, R.A.2
Sefler, A.M.3
Liu, K.4
Hruzewicz, W.N.5
Liu, C.W.6
Cho, H.S.7
Wemmer, D.E.8
Bartlett, P.A.9
-
59
-
-
3543008951
-
-
(a) Hanessian, S.; Papeo, G.; Fettis, K.; Therrien, E.; Viet, M. T. J. Org. Chem. 2004, 69, 4891-4899.
-
(2004)
J. Org. Chem.
, vol.69
, pp. 4891-4899
-
-
Hanessian, S.1
Papeo, G.2
Fettis, K.3
Therrien, E.4
Viet, M.T.5
-
60
-
-
0141566578
-
-
(b) Hanessian, S.; Papeo, G.; Angiolini, M.; Fettis, K.; Beretta, M.; Munro, A. J. Org. Chem. 2003, 68, 7204-7218.
-
(2003)
J. Org. Chem.
, vol.68
, pp. 7204-7218
-
-
Hanessian, S.1
Papeo, G.2
Angiolini, M.3
Fettis, K.4
Beretta, M.5
Munro, A.6
-
61
-
-
0141789927
-
-
(c) Hanessian, S.; Sailes, H.; Munro, A.; Therrien, E. J. Org. Chem. 2003, 68, 7219-7233.
-
(2003)
J. Org. Chem.
, vol.68
, pp. 7219-7233
-
-
Hanessian, S.1
Sailes, H.2
Munro, A.3
Therrien, E.4
-
65
-
-
0011152487
-
-
Nishihara, H.; Nishihara, K.; Uefuji, T.; Sakota, N. Bull. Chem. Soc. Jpn. 1975, 48, 553-555.
-
(1975)
Bull. Chem. Soc. Jpn.
, vol.48
, pp. 553-555
-
-
Nishihara, H.1
Nishihara, K.2
Uefuji, T.3
Sakota, N.4
-
68
-
-
0020765450
-
-
Balaram, H.; Prasad, B. V. V.; Balaram, P. J. Am. Chem. Soc. 1983, 105, 4065-4071.
-
(1983)
J. Am. Chem. Soc.
, vol.105
, pp. 4065-4071
-
-
Balaram, H.1
Prasad, B.V.V.2
Balaram, P.3
-
73
-
-
0011491177
-
-
(a) Bothner-By, A. A.; Stephens, R. L.; Lee, J.; Warren, C. D.; Jeanloz, R. W. J. Am. Chem. Soc. 1984, 106, 811-813.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 811-813
-
-
Bothner-By, A.A.1
Stephens, R.L.2
Lee, J.3
Warren, C.D.4
Jeanloz, R.W.5
-
75
-
-
0043180474
-
-
URL
-
Wang, G.; Dunbrack, R. Bioinformatics 2003, 19, 1589-1591. URL: http://dunbrack.fccc.edu/PISCES.php.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack, R.2
-
76
-
-
0033954256
-
-
Berman, H.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
77
-
-
0001244666
-
-
Gattiker, A.; Gasteiger, E.; Bairoch, A. Appl. Bioinform. 2002, 1, 107-108. URL: http://us.expasy.org/tools/scanprosite.
-
(2002)
Appl. Bioinform.
, vol.1
, pp. 107-108
-
-
Gattiker, A.1
Gasteiger, E.2
Bairoch, A.3
-
79
-
-
0033552238
-
-
(b) Gu, Y.; Kar, T.; Scheiner, S. J. Am. Chem. Soc. 1999, 121, 9411-9422.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9411-9422
-
-
Gu, Y.1
Kar, T.2
Scheiner, S.3
-
80
-
-
0034679011
-
-
(c) Vargas, R.; Garza, J.; Dixon, D. A.; Hay, B. P. J. Am. Chem. Soc. 2000, 122, 4750-4755.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 4750-4755
-
-
Vargas, R.1
Garza, J.2
Dixon, D.A.3
Hay, B.P.4
-
81
-
-
0035971221
-
-
(d) Scheiner, S.; Kar, T.; Gu, Y. J. Biol. Chem. 2001, 276, 9832-9837 .
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 9832-9837
-
-
Scheiner, S.1
Kar, T.2
Gu, Y.3
-
84
-
-
0035528860
-
-
(c) Hunter, C. A.; Lawson, K. R.; Perkins, J.; Urch, C. J. J. Chem. Soc., Perkin Trans. 2 2001, 651-669.
-
(2001)
J. Chem. Soc., Perkin Trans. 2
, pp. 651-669
-
-
Hunter, C.A.1
Lawson, K.R.2
Perkins, J.3
Urch, C.J.4
-
85
-
-
0037140752
-
-
(d) Chelli, R.; Gervasio, F. L.; Procacci, P.; Schettino, V. J. Am. Chem. Soc. 2002, 124, 6133-6143.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6133-6143
-
-
Chelli, R.1
Gervasio, F.L.2
Procacci, P.3
Schettino, V.4
-
87
-
-
0038631832
-
-
(f) Aravinda, S.; Shamala, N.; Das, C.; Sriranjini, A.; Karle, I. L.; Balaram, P. J. Am. Chem. Soc. 2003, 125, 5308-5315.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 5308-5315
-
-
Aravinda, S.1
Shamala, N.2
Das, C.3
Sriranjini, A.4
Karle, I.L.5
Balaram, P.6
-
90
-
-
0030738511
-
-
(b) Datta, S.; Shamala, N.; Banerjee, A.; Balaram, P. J. Pept. Res. 1997, 49, 604-611.
-
(1997)
J. Pept. Res.
, vol.49
, pp. 604-611
-
-
Datta, S.1
Shamala, N.2
Banerjee, A.3
Balaram, P.4
-
94
-
-
0027537248
-
-
(c) Muller, G.; Gurrath, M.; Kurz, M.; Kessler, H. Proteins 1993, 15, 235-251.
-
(1993)
Proteins
, vol.15
, pp. 235-251
-
-
Muller, G.1
Gurrath, M.2
Kurz, M.3
Kessler, H.4
-
95
-
-
0028068045
-
-
(d) Yao, J.; Fehrer, V. A.; Espejo, B. F.; Reymond, M. T.; Wright, P. E.; Dyson, H. J. J. Mol. Biol. 1994, 243, 736-753.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 736-753
-
-
Yao, J.1
Fehrer, V.A.2
Espejo, B.F.3
Reymond, M.T.4
Wright, P.E.5
Dyson, H.J.6
-
96
-
-
0028251938
-
-
(e) Yao, J.; Bruschweiler, R.; Dyson, H. J. ; Wright, P. E. J. Am. Chem. Soc. 1994, 116, 12051-12052.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 12051-12052
-
-
Yao, J.1
Bruschweiler, R.2
Dyson, H.J.3
Wright, P.E.4
-
99
-
-
33645730970
-
-
(h) Meng, H. Y.; Thomas, K. M.; Lee, A. E.; Zondlo, N. J. Biopolymers (Peptide Science) 2006, 84, 192-204.
-
(2006)
Biopolymers (Peptide Science)
, vol.84
, pp. 192-204
-
-
Meng, H.Y.1
Thomas, K.M.2
Lee, A.E.3
Zondlo, N.J.4
-
100
-
-
0030175554
-
-
(a) Pavone, V.; Gaeta, G.; Lombardi, A.; Nastri, F.; Maglio, O.; Isernia, C.; Saviano, M. Biopolymers 1996, 38, 705-721.
-
(1996)
Biopolymers
, vol.38
, pp. 705-721
-
-
Pavone, V.1
Gaeta, G.2
Lombardi, A.3
Nastri, F.4
Maglio, O.5
Isernia, C.6
Saviano, M.7
-
101
-
-
0000646404
-
-
(b) Nataraj, D. V.; Srinivasan, N.; Sowdhamini, R.; Ramakrishnan, C. Curr. Sci. 1995, 69, 434-447.
-
(1995)
Curr. Sci.
, vol.69
, pp. 434-447
-
-
Nataraj, D.V.1
Srinivasan, N.2
Sowdhamini, R.3
Ramakrishnan, C.4
-
102
-
-
1842532057
-
-
(c) Dasgupta, B.; Pal, L.; Basu, G.; Chakrabarti, P. Proteins: Struct. Funct. Bioinformatics 2004, 55, 305-315.
-
(2004)
Proteins: Struct. Funct. Bioinformatics
, vol.55
, pp. 305-315
-
-
Dasgupta, B.1
Pal, L.2
Basu, G.3
Chakrabarti, P.4
-
103
-
-
0036400325
-
-
(a) Shi, Z.; Woody, R. W.; Kallenbach, N. R. Adv. Protein Chem. 2002, 62, 163-240.
-
(2002)
Adv. Protein Chem.
, vol.62
, pp. 163-240
-
-
Shi, Z.1
Woody, R.W.2
Kallenbach, N.R.3
-
104
-
-
0346733333
-
-
(b) Cao, W.; Bracken, W. C.; Kallenbach, N. R.; Lu, M. Protein Sci. 2004, 13, 177-189.
-
(2004)
Protein Sci.
, vol.13
, pp. 177-189
-
-
Cao, W.1
Bracken, W.C.2
Kallenbach, N.R.3
Lu, M.4
-
105
-
-
20344400382
-
-
(c) Rath, A.; Davidson, A. R.; Deber, C. M. Biopolymers (Peptide Science) 2005, 80, 179-185.
-
(2005)
Biopolymers (Peptide Science)
, vol.80
, pp. 179-185
-
-
Rath, A.1
Davidson, A.R.2
Deber, C.M.3
-
106
-
-
29144433298
-
-
(d) Shi, Z.; Chen, K.; Liu, Z.; Ng, A.; Bracken, W. C.; Kallenbach, N. R. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17964-17968.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17964-17968
-
-
Shi, Z.1
Chen, K.2
Liu, Z.3
Ng, A.4
Bracken, W.C.5
Kallenbach, N.R.6
-
108
-
-
28644440282
-
-
(b) Kentsis, A.; Mezei, M.; Osman, R. P. Proteins: Struct. Fund Bioinformatics 2005, 61, 769-776.
-
(2005)
Proteins: Struct. Fund Bioinformatics
, vol.61
, pp. 769-776
-
-
Kentsis, A.1
Mezei, M.2
Osman, R.P.3
-
109
-
-
0019073085
-
-
(a) Nagaraj, R.; Venkatachalapathi, Y. V.; Balaram, P. Int. J. Peptide Protein Res. 1980, 16, 291-298.
-
(1980)
Int. J. Peptide Protein Res.
, vol.16
, pp. 291-298
-
-
Nagaraj, R.1
Venkatachalapathi, Y.V.2
Balaram, P.3
-
110
-
-
0016390628
-
-
(b) Deber, C. M.; Fossel, E. T.; Blout, E. R. J. Am. Chem. Soc. 1974, 96, 4015-4017.
-
(1974)
J. Am. Chem. Soc.
, vol.96
, pp. 4015-4017
-
-
Deber, C.M.1
Fossel, E.T.2
Blout, E.R.3
-
116
-
-
0027996196
-
-
(f) Bella, J.; Eaton, M.; Brodsky, B.; Berman, H. M. Science 1994, 266, 75-81.
-
(1994)
Science
, vol.266
, pp. 75-81
-
-
Bella, J.1
Eaton, M.2
Brodsky, B.3
Berman, H.M.4
-
117
-
-
0032563109
-
-
(g) Kramer, R. Z.; Vitagliano, L.; Bella, J.; Berisio, R.; Mazzarella, L.; Brodsky, B.; Zagari, A.; Berman, H. M. J. Mol. Biol. 1998, 280, 623-638.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 623-638
-
-
Kramer, R.Z.1
Vitagliano, L.2
Bella, J.3
Berisio, R.4
Mazzarella, L.5
Brodsky, B.6
Zagari, A.7
Berman, H.M.8
-
118
-
-
0035800664
-
-
(h) Kramer, R. Z.; Bella, J.; Brodsky, B.; Berman, H. M. J. Mol. Biol. 2001, 311, 131-147.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 131-147
-
-
Kramer, R.Z.1
Bella, J.2
Brodsky, B.3
Berman, H.M.4
-
120
-
-
1142274316
-
-
(j) Vila, J. A.; Baldoni, H. A.; Ripoll, D. R.; Ghosh, A.; Scheraga, H. A. Biophys. J. 2004, 86, 731-742.
-
(2004)
Biophys. J.
, vol.86
, pp. 731-742
-
-
Vila, J.A.1
Baldoni, H.A.2
Ripoll, D.R.3
Ghosh, A.4
Scheraga, H.A.5
-
124
-
-
0032486107
-
-
(b) Reimer, U.; Scherer, G.; Drewello, M.; Kruber, S.; Schutkowski, M.; Fischer, G. J. Mol. Biol. 1998, 279, 449-460.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 449-460
-
-
Reimer, U.1
Scherer, G.2
Drewello, M.3
Kruber, S.4
Schutkowski, M.5
Fischer, G.6
-
127
-
-
19744375512
-
-
(e) Pahlke, D.; Freund, C.; Leitner, D.; Labudde, D. BMC Struct. Biol. 2005, 5, 8.
-
(2005)
BMC Struct. Biol.
, vol.5
, pp. 8
-
-
Pahlke, D.1
Freund, C.2
Leitner, D.3
Labudde, D.4
-
128
-
-
0027080914
-
-
(a) Milner-White, E. J.; Bell, L. H.; Maccallum, P. H. J. Mol. Biol. 1992, 228, 725-734.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 725-734
-
-
Milner-White, E.J.1
Bell, L.H.2
Maccallum, P.H.3
-
130
-
-
0035182916
-
-
(c) Vitagliano, L.; Berisio, R.; Mastrangelo, A.; Mazzarella, L.; Zagari, A. Protein Sci. 2001, 10, 2627-2632.
-
(2001)
Protein Sci.
, vol.10
, pp. 2627-2632
-
-
Vitagliano, L.1
Berisio, R.2
Mastrangelo, A.3
Mazzarella, L.4
Zagari, A.5
-
131
-
-
15244362919
-
-
(d) Ho, B. K.; Coutsias, E. A.; Seok, C.; Dill, K. A. Protein Sci. 2005, 14, 1011-1018.
-
(2005)
Protein Sci.
, vol.14
, pp. 1011-1018
-
-
Ho, B.K.1
Coutsias, E.A.2
Seok, C.3
Dill, K.A.4
-
132
-
-
0000535768
-
-
(e) Eberhardt, E. S.; Loh, S. N.; Hinck, A. P.; Raines, R. T. J. Am. Chem. Soc. 1992, 114, 5437-5439.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 5437-5439
-
-
Eberhardt, E.S.1
Loh, S.N.2
Hinck, A.P.3
Raines, R.T.4
-
133
-
-
0028038016
-
-
(f) Panasik, N., Jr.; Eberhardt, E. S.; Edison, A. S.; Powell, D. R.; Raines, R. T. Int. J. Peptide Protein Res. 1994, 44, 262-269.
-
(1994)
Int. J. Peptide Protein Res.
, vol.44
, pp. 262-269
-
-
Panasik Jr., N.1
Eberhardt, E.S.2
Edison, A.S.3
Powell, D.R.4
Raines, R.T.5
-
134
-
-
0030457120
-
-
(g) Eberhardt, E. S.; Panasik, N., Jr.; Raines, R. T. J. Am. Chem. Soc. 1996, 118, 12261-12266.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 12261-12266
-
-
Eberhardt, E.S.1
Panasik Jr., N.2
Raines, R.T.3
-
135
-
-
0037139532
-
-
(h) DeRider, M. L.; Wilkens, S. J.; Waddell, M. J.; Bretscher, L. E.; Weinhold, F.; Raines, R. T.; Markley, J. L. J. Am. Chem. Soc. 2002, 124, 2497-2505.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 2497-2505
-
-
DeRider, M.L.1
Wilkens, S.J.2
Waddell, M.J.3
Bretscher, L.E.4
Weinhold, F.5
Raines, R.T.6
Markley, J.L.7
-
136
-
-
0030181072
-
-
(a) Kang, Y. K. J. Phys. Chem. 1996, 100, 11589-11595.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 11589-11595
-
-
Kang, Y.K.1
-
139
-
-
0001731773
-
-
(d) Némethy, G.; Gibson, K. D.; Palmer, K. A.; Yoon, C. N.; Paterlini, G.; Zagari, A.; Rumsey, S.; Scheraga, H. A. J. Phys. Chem. 1992, 96, 6472-6484.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 6472-6484
-
-
Némethy, G.1
Gibson, K.D.2
Palmer, K.A.3
Yoon, C.N.4
Paterlini, G.5
Zagari, A.6
Rumsey, S.7
Scheraga, H.A.8
-
140
-
-
0037047134
-
-
(a) Shi, Z.; Olson, C. A.; Rose, G. D.; Baldwin, R. L.; Kallenbach, N. R. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 9190-9195.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 9190-9195
-
-
Shi, Z.1
Olson, C.A.2
Rose, G.D.3
Baldwin, R.L.4
Kallenbach, N.R.5
-
141
-
-
7444255986
-
-
(b) Chen, K.; Liu, Z.; Kallenbach, N. R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 15352-15357.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15352-15357
-
-
Chen, K.1
Liu, Z.2
Kallenbach, N.R.3
-
142
-
-
9344251691
-
-
(c) Liu, Z.; Chen, K.; Ng, A.; Shi, Z.; Woody, R. W.; Kallenbach, N. R. J. Am. Chem. Soc. 2004, 126, 15141-15150.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 15141-15150
-
-
Liu, Z.1
Chen, K.2
Ng, A.3
Shi, Z.4
Woody, R.W.5
Kallenbach, N.R.6
-
143
-
-
1842500993
-
-
(d) Kentsis, A.; Mezei, M.; Gindin, T.; Osman, R. Proteins: Struct. Funct. Bioinformatics 2004, 55, 493-501.
-
(2004)
Proteins: Struct. Funct. Bioinformatics
, vol.55
, pp. 493-501
-
-
Kentsis, A.1
Mezei, M.2
Gindin, T.3
Osman, R.4
-
144
-
-
1842500992
-
-
(e) Mezei, M.; Fleming, P. J.; Srinivasan, R.; Rose, G. D. Proteins: Struct. Funct. Bioinformatics 2004, 55, 502-507.
-
(2004)
Proteins: Struct. Funct. Bioinformatics
, vol.55
, pp. 502-507
-
-
Mezei, M.1
Fleming, P.J.2
Srinivasan, R.3
Rose, G.D.4
-
146
-
-
4444343312
-
-
(b) Mizuno, K.; Hayashi, T.; Peyton, D. H.; Bächinger, H. P. J. Biol. Chem. 2004, 279, 38072-38078.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 38072-38078
-
-
Mizuno, K.1
Hayashi, T.2
Peyton, D.H.3
Bächinger, H.P.4
-
147
-
-
11144230087
-
-
(c) Fleming, P. J.; Fitzkee, N. C.; Mezei, M.; Srinivasan, R.; Rose, G. D. Protein Sci. 2005, 14, 111-118.
-
(2005)
Protein Sci.
, vol.14
, pp. 111-118
-
-
Fleming, P.J.1
Fitzkee, N.C.2
Mezei, M.3
Srinivasan, R.4
Rose, G.D.5
-
148
-
-
28544441377
-
-
(d) Kawahara, K.; Nishi, Y.; Nakamura, S.; Uchiyama, S.; Nishiuchi, Y.; Nakazawa, T.; Ohkubo, T.; Kobayashi, Y. Biochemistry 2005, 44, 15812-15822.
-
(2005)
Biochemistry
, vol.44
, pp. 15812-15822
-
-
Kawahara, K.1
Nishi, Y.2
Nakamura, S.3
Uchiyama, S.4
Nishiuchi, Y.5
Nakazawa, T.6
Ohkubo, T.7
Kobayashi, Y.8
-
152
-
-
0014953362
-
-
γ-endo form see: (a) Ramachandran, G. N.; Lakshminarayanan, A. V.; Balasubramanian, R.; Tegoni, G. Biochim. Biophys. Acta 1970, 221, 165-181.
-
(1970)
Biochim. Biophys. Acta
, vol.221
, pp. 165-181
-
-
Ramachandran, G.N.1
Lakshminarayanan, A.V.2
Balasubramanian, R.3
Tegoni, G.4
-
155
-
-
5944250450
-
-
For the UP and DOWN nomenclature see: Momany, F. A.; McGuire, R. E.; Burgess, A. W.; Scheraga, H. A. J. Phys. Chem. 1975, 79, 2361-2381.
-
(1975)
J. Phys. Chem.
, vol.79
, pp. 2361-2381
-
-
Momany, F.A.1
McGuire, R.E.2
Burgess, A.W.3
Scheraga, H.A.4
-
156
-
-
0037122166
-
-
For recent experimental studies on the gas phase conformation of proline and hydroxyproline using Fourier transform microwave spectroscopy see: (a) Lesarri, A.; Mata, S.; Cocinero, E. J.; Blanco, S.; López, J. C.; Alonso, J. L. Angew. Chem., Int. Ed. 2002, 41, 4673-4676.
-
(2002)
Angew. Chem., Int. Ed.
, vol.41
, pp. 4673-4676
-
-
Lesarri, A.1
Mata, S.2
Cocinero, E.J.3
Blanco, S.4
López, J.C.5
Alonso, J.L.6
-
157
-
-
14744283023
-
-
(b) Lesarri, A.; Cocinero, E. J.; López, J. C.; Alonso, J. L. J. Am. Chem. Soc. 2005, 127, 2572-2579 .
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 2572-2579
-
-
Lesarri, A.1
Cocinero, E.J.2
López, J.C.3
Alonso, J.L.4
-
158
-
-
22244458915
-
-
Jha, A. K.; Colubri, A.; Zaman, M. H.; Koide, S.; Sosnick, T. R.; Freed, K. F. Biochemistry 2005, 44, 9691-9702.
-
(2005)
Biochemistry
, vol.44
, pp. 9691-9702
-
-
Jha, A.K.1
Colubri, A.2
Zaman, M.H.3
Koide, S.4
Sosnick, T.R.5
Freed, K.F.6
-
159
-
-
0346835559
-
-
Ph. D thesis, Indian Institute of Science, Bangalore
-
Gunasekaran, K. Stereochemical Analysis of Protein Structures-Lessons for Design, Engineering and Prediction, Ph. D thesis, Indian Institute of Science, Bangalore, 1997.
-
(1997)
Stereochemical Analysis of Protein Structures-Lessons for Design, Engineering and Prediction
-
-
Gunasekaran, K.1
-
160
-
-
0014842661
-
-
IUPAC-IUB Commission on Biochemical Nomenclature, Biochemistry 1970, 9, 3471-3479.
-
(1970)
Biochemistry
, vol.9
, pp. 3471-3479
-
-
-
163
-
-
0029881007
-
-
Koradi, R.; Billeter, M.; Wüthrich, K. J. Mol. Graphics 1996, 14, 51-55.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
|