Phylogeography of Eastern Polynesian sandalwood (Santalum insulare), an endangered tree species from the Pacific: A study based on chloroplast microsatellites

Journal of Biogeography

Volumn 32, Issue 10, 2005, Pages 1763-1774

  Butaud, Jean François ^b,c,d   Rives, Fanny ^a,e   Verhaegen, Daniel ^a   Bouvet, Jean Marc ^a,f  

^a CIRAD   (France)

^b UNIVERSITÉ DE LA POLYNÉSIE FRANÇAISE   (French Polynesia)

^c Rural Development Service of French Polynesia   (France)

^d UNIVERSITY OF FRENCH POLYNESIA   (France)

^e SORBONNE UNIVERSITÉ   (France)

^f Forestry Department   (France)

Author keywords

Chloroplast microsatellite markers; French Polynesia; Genetic diversity; Genetic structure; Islands; Phylogeography; Sandalwood; Santalum insulare; Tree species conservation; Vicariance

Indexed keywords

CHLOROPLAST; CONSERVATION GENETICS; ENDANGERED SPECIES; ENDEMIC SPECIES; GENETIC STRUCTURE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; SPECIES CONSERVATION; TREE;

PACIFIC ISLANDS; PACIFIC OCEAN; POLYNESIA;

MAGNOLIOPHYTA; SANTALACEAE; SANTALUM INSULARE;

EID: 33745330212     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2005.01330.x     Document Type: Article

References (56)

1. Andrianoelina O. Rakotondraoelina H. Ramamonjisoa L. Maley J. Danthu P. Bouvet J.M. ( 2005) Genetic diversity of Dalbergia monticola (Fabaceae), an endangered tree species in the fragmented oriental forest of Madagascar. Biodiversity and Conservation, in press Sanderson M.J. ( 1998) Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proceedings of the National Academy of Sciences of the United States of America, 95, 9402 9406.
2. Barrett S.C.H. ( 1996) The reproductive biology and genetics of island plants. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 351, 725 733.
3. Barrett D.R. Fox J.E.D. ( 1995) Geographical distribution of Santalaceae and botanical characteristics of species in the genus Santalum. Sandalwood seed nursery and plantation technology. Proceedings of a Regional Workshop for Pacific Island Countries, Nouméa, New Caledonia, 1-11 August 1994 ( ed. by L. Gjerum J.E.D. Fox Y. Ehrhart pp. 167 172. FAO, Suva, Fiji.
4. Barton N.H. ( 1989) Founder effect speciation. Speciation and its consequences ( ed. by D. Otte J.A. Endler pp. 229 256. Sinauer Press, Sunderland, MA, USA.
5. Bhaskar V. ( 1992) Pollination biology and fertilization in Santalum album L. (Santalaceae). Flora, 187, 73 78.
6. Birky C.W., Jr. ( 1995) Uniparental inheritance of mitochondria and chloroplast genes: mechanisms and evolution. Proceedings of the National Academy of Sciences of the United States of America, 92, 11331 11338.
7. Blondel J. ( 1995) Biogéographie, approche écologique et évolutive. Masson, Paris.
8. Bousquet J. Simon L. Lalonde M. ( 1990) DNA amplification from vegetative and sexual tissues of trees using polymerase chain reaction. Canadian Journal of Forestry Research, 20, 254 257.
9. Bryan G.J. McNicoll J. Ramsay G. Meyer R.C. De Jong W.S. ( 1999) Polymorphic simple sequence repeat markers in chloroplast genomes of solanaceous plants. Theoretical and Applied Genetics, 99, 859 867.
10. Butaud J.F. ( 2004) Santalum insulare (Bertero ex A. DC.): distribution and ecology. Sandalwood Research Newsletter, 19, 1 4.
11. Butaud J.F. Tetuanui W. ( 2005) Sandalwood in French Polynesia. Proceedings of the Regional Workshop on Sandalwood Research, Development and Extension in the Pacific Islands and Asia, Noumea, New Caledonia, 7-11 October 2002, Secretariat of the Pacific Community Fiji Edwards A.W.F. ( 1967) Phylogenetic analysis: models and estimation procedures. American Journal of Human Genetics, 19, 233 257.
12. Cavers S. Navarro C. Lowe A.J. ( 2003) A combination of molecular markers identifies evolutionary significant units in Cedrela odorata L. (Meliaceae) in Costa Rica. Conservation Genetics, 4, 571 580.
13. Clouard V. Bonneville A. ( 2001) Ages of Seamounts, Islands and Plateaus of the Pacifique Plate, version 2.0. Jeune équipe Terre-Océan, University of French Polynesia. http://www.upf.pf/jeto/geos/data/ ages_pacific_v2.pdf
14. Collevatti R.G. Grattapaglia D. Hay J.D. ( 2003) Evidence for multiple lineages of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis of chloroplast DNA sequence and microsatellite haplotype variation. Molecular Ecology, 12, 105 115.
15. Crandall K.C. Bininda-Emonds O.R.P. Mace G.M. Wane R.K. ( 2000) Considering evolutionary processes in conservation biology. Trends in Ecology and Evolution, 15, 290 295.
16. Echt C.S. Deverno L.L. Anzidei M. Vendramin G.G. ( 1998) Chloroplast microsatellites reveal population genetic diversity in red pine, Pinus resinosa Ait. Molecular Ecology, 7, 307 316.
17. Emerson B.C. ( 2002) Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951 966.
18. Excoffier L. Smouse P.E. ( 1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics, 136, 343 359.
19. Excoffier L. Smouse P.E. Quattro J.M. ( 1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
20. Felsenstein J. ( 1993) phylip. Phylogenetic inference package, version 6.1. University of Washington, Seattle, WA, USA.
21. Florence J. ( 1997) Flore de la Polynésie française, Vol. 1. Edition de l'Orstom, Paris.
22. Fontaine C. Lovett P.N. Sanou H. Maley J. Bouvet J.M. ( 2004) Genetic diversity of the shea tree (Vitellaria paradoxa C.F. Gaertn.), detected by RAPD and chloroplast microsatellite markers. Heredity, 93, 639 648.
23. Fosberg F.R. Sachet M.-H. ( 1985) Santalum in Eastern Polynesia. Candollea, 40, 459 470.
24. Francisco-Ortega J. Goertzen L.R. Santos-Guerra A. Benabid A. Jansen R.K. ( 1999) Molecular systematics of the Asteriscus alliance (Asteraceae: Inuleae). I: Evidence from the internal transcribed spacers of nuclear ribosomal DNA. Systematic Botany, 24, 249 266.
25. Gemmill C.E.C. Allan G.J. Wagner W.L. Zimmer E.A. ( 2002) Evolution of insular Pacific Pittosporum (Pittosporaceae): origin of the Hawaiian radiation. Molecular Phylogenetics and Evolution, 22, 31 42.
26. Grivet D. Petit R. ( 2003) Chloroplast DNA phylogeography of the hornbeam in Europe: evidence for the bottleneck at the outset of the postglacial colonisation. Conservation Genetics, 4, 47 56.
27. Howarth D.G. Gustafsson M.H.G. Baum D.A. Motley T.J. ( 2003) Phylogenetics of the genus Scaevola (Goodeniaceae): implication for dispersal patterns across the Pacific Basin and colonization of the Hawaiian Islands. American Journal of Botany, 90, 915 923.
28. IUCN ( 2004) Red list of threatened species. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland. http://www.redlist.org
29. Jorgensen T.H. Frydenberg J. ( 1999) Diversification in insular plants: inferring the phylogenetic relationship in Aeonium (Crassulaceae) using ITS sequences of nuclear ribosomal DNA. Nordic Journal of Botany, 19, 613 621.
30. Kulkarni H.D. Muniyamma M. ( 1998) Floral biology and breeding systems in sandal, Santalum album L. Sandal and its products: Proceedings of an International Seminar, 18-19 December 1997, Bangalore, India ( ed. by A.M. Radomiljac H.S. Ananthapadmanabho R.M. Welbourn K. Satyanarayana Rao). ACIAR Proceedings, 84, 135 146.
31. Mengoni A. Barabesi C. Gonnelli C. Galardi F. Gabbrielli R. Bazziaculpo M. ( 2001) Genetic diversity of heavy metal tolerant populations in Silene paradoxa L. (Caryophyllaceae): chloroplast microsatellite analysis. Molecular Ecology, 10, 1909 1916.
32. Mengoni A. Gonnelli C. Brocchini E. Galardi F. Pucci S. Gabbrielli R. Bazziaculpo M. ( 2003) Chloroplast genetic diversity and biogeography in the serpentine endemic Ni-hyperaccumulator Alyssum bertolonii. New Physiologist, 157, 349 356.
33. Moody A. ( 2000) Analysis of plant species diversity with respect to island characteristics on the Channel islands, California. Journal of Biogeography, 27, 711 723.
34. Moritz C. ( 1994) Defining significant units for conservation. Trends in Ecology and Evolution, 9, 373 375.
35. Moritz C. ( 1999) Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas, 130, 217 228.
36. Moritz C. Faith D.P. ( 1998) Comparative phylogeography and the identification of genetically divergent areas for conservation. Molecular Ecology, 7, 419 429.
37. Nei M. ( 1987) Molecular evolutionary genetics. Columbia University Press, New York, NY, USA.
38. Newton A.C. Allnut T.R. Gillies A.C.M. Lowe A.J. Ennos R.A. ( 1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution, 14, 140 145.
39. Palmé A.E. Vendramin G.G. ( 2002) Chloroplast DNA variation, postglacial recolonization and hybridization in hazel, Corylus avellana. Molecular Ecology, 11, 1769 1779.
40. Provan J. Powell W. Hollingsworth M. ( 2001) Chloroplast microsatellites: new tools for studies in plant ecology and evolution. Trends in Ecology and Evolution, 16, 142 147.
41. Raspé O. Saumitou-Laprade P. Cuguen J. Jacquemart A.-L. ( 2000) Chloroplast DNA haplotype and population differentiation in Sorbus aucuparia L. (Rosaceae: Maloideae). Molecular Ecology, 9, 1113 1122.
42. Rugkhla A. McComb J. ( 1993) Self and cross pollination in Santalum spicatum and S. album. Sandalwood Research Newsletter, 1, 2 3.
43. Ryder A.O. ( 1986) Species conservation and systematics, the dilemma of subspecies. Trends Ecology and Evolution, 1, 9 10.
44. Schneider S. Roessli D. Excoffier L. ( 2000) arlequin version 2000: a software for population genetics data analysis. Genetics and Biometrics Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
45. Sheely D.L. Meagher T.R. ( 1996) Genetic diversity in Micronesian island populations of the tropical tree Campnosperma brevipetiolata (Anacardiaceae). American Journal of Botany, 83, 1571 1579.
46. Skottsberg C. ( 1930a) Further notes on Pacific sandalwoods. Meddelanden fran Göteborgs Botaniska Trädgard, 5, 135 145.
47. Skottsberg C. ( 1930b) The geographical distribution of the sandalwoods and its significance. Proceedings of the 4th Pacific Science Congress (Java), 3, 435 442.
48. Skottsberg C. ( 1934) Additional notes on Santalum and Vaccinium from the Pacific. Meddelanden fran Göteborgs Botaniska Trädgard, 9, 185 192.
49. Skottsberg C. ( 1938) Ericaceae and Santalaceae of Southeastern Polynesia. Occasional Paper of the Bernice P. Bishop Museum, 14, 31 43.
50. Slatkin M. Barton N.H. ( 1989) A comparison of three indirect methods for estimating average levels of gene flow. Evolution, 43, 1349 1368.
51. Vargas P. McAllister H.A. Morton C. Jury S.L. Wilkinson M.J. ( 1999) Polyploid speciation in Hedera (Araliaceae): phylogenetic and biogeographic insights based on chromosome counts and ITS sequences. Plant Systematics and Evolution, 219, 165 179.
52. Warburton C.L. James E.A. Fripp Y.J. Trueman S.J. Wallace H.M. ( 2000) Clonality and sexual reproductive failure in remnant populations of Santalum lanceolatum (Santalaceae). Biological Conservation, 96, 45 54.
53. Weir B.S. Cockerham C.C. ( 1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
54. Weising K. Gardner R.C. ( 1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome, 42, 9 19.
55. van Welzen PC Turner U. Hovenkamp P. ( 2003) Historical biogeography of Southeast Asia and the West Pacific, or the generality of unrooted area networks as historical biogeographic hypotheses. Journal of Biogeography, 30, 181 192.
56. Wright S.D. Yong C.G. Wichman S.R. Dawson J.W. Gardner R.C. ( 2001) Stepping stones to Hawaii: a trans-equatorial dispersal pathway for Metrosideros (Myrtaceae) inferred from nrDNA (ITS+ETS). Journal of Biogeography, 28, 769 774.