Inter- and intraspecific phylogeography of small mammals in the Atacama Desert and adjacent areas of northern Chile

Journal of Biogeography

Volumn 32, Issue 11, 2005, Pages 1931-1941

  Eduardo Palma, R ^a,b   Marquet, Pablo A ^a,b   Boric Bargetto, Dusan ^a,c  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^b P Universidad Católica de Chile ^*  (Chile)

^c Department of Ecology   (Spain)

Author keywords

Abrothrix; Andean clade; Atacama Desert; Cytochrome b; Phyllotis; Phylogeography; Puna; Sigmodontine mice

Indexed keywords

CANYON; CLIMATE CONDITIONS; COASTAL ZONE; CYTOCHROME; DESERT; EVOLUTIONARY BIOLOGY; HABITAT AVAILABILITY; HYPOTHESIS TESTING; LOWLAND ENVIRONMENT; METHODOLOGY; PERIPHERAL REGION; PHYLOGEOGRAPHY; PLEISTOCENE; RODENT; SMALL MAMMAL; TAXONOMY; UPLAND REGION; VALLEY; VEGETATION COVER;

ANDES; ATACAMA DESERT; CHILE; PACIFIC COAST [SOUTH AMERICA]; PUNA; SOUTH AMERICA;

ABROTHRIX; ABROTHRIX ANDINUS; ABROTHRIX OLIVACEUS; MAMMALIA; PHYLLOTIS; PHYLLOTIS LIMATUS; PHYLLOTIS XANTHOPYGUS CHILENSIS;

EID: 33745309872     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2005.01349.x     Document Type: Article

References (58)

1. Akaike H. ( 1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716 723.
2. Baskin J.A. ( 1978) Bensonomys, Calomys, and the origin of the phyllotine group of Neotropical cricetines (Rodentia, Cricetidae). Journal of Mammalogy, 59, 125 135.
3. Betancourt J.L. Latorre C. Reach J.A. Quade J. Rylander K.A. ( 2000) A 22,000-year record of monsoonal precipitation from northern Chile's Atacama Desert. Science, 289, 1542 1546.
4. Bibb M.J. Vanetten R.A. Wright C.T. Walberg M.W. ( 1981) Sequence and gene organization of mouse mitochondrial DNA. Cell, 26, 167 180.
5. Bozinovic F. Marquet P.A. ( 1991) Energetics and torpor in the Atacama-desert dwelling rodent Phyllotis darwini rupestris. Journal of Mammalogy, 72, 734 738.
6. Caviedes C.N. Iriarte J.A. ( 1989) Migration and distribution of rodents in central Chile since the Pleistocene: the paleogeographic evidence. Journal of Biogeography, 16, 181 187.
7. D'Elía G. ( 2003) Phylogenetics of Sigmodontinae (Rodentia, Muroidea, Cricetidae), with special reference to the akodont group, and with additional comments on historical biogeography. Cladistics, 19, 307 323.
8. Darlington P.J. ( 1965) Biogeography of the southern end of the world. Harvard University Press, Cambridge, MA.
9. Edwards S.V. Arctander P. Wilson A.C. ( 1991) Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proceedings of the Royal Society of London B, 243, 99 107.
10. Engel S.R. Hogan K.M. Taylor J.F. Davis S.K. ( 1998) Molecular systematics and paleobiogeography of the South American sigmodontine rodents. Molecular Biology and Evolution, 15, 35 49.
11. Felsenstein J. ( 1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783 791.
12. Fu Y.X. Li W.H. ( 1993) Statistical test of neutrality of mutations. Genetics, 133, 693 709.
13. Huelsenbeck J.P. Ronquist F. ( 2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
14. Irwin D.M. Kocher T.D. Wilson A.C. ( 1991) Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution, 32, 128 144.
15. Kalin-Arroyo M.T. Squeo F.A. Veit H. Cavieres L. León P. Belmonte E. ( 1997) Flora and vegetation of northern Chilean Andes. El Altiplano: ciencia y conciencia en los Andes. Actas del II Simposio Internacional de Estudios Altiplánicos, Arica, Chile ( ed. by R. Charrier pp. 167 178. Universidad de Chile, Santiago
16. Wilson A.C. ( 1989) Dynamics of mitochondrial DNA evolution in mammals: amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America, 86, 6196 6200.
17. Kuch M. Rohland N. Betancourt J.L. Latorre C. Steppan S.C. Poinar H.N. ( 2002) Molecular analysis of a 11,700-year-old rodent midden from the Atacama Desert, Chile. Molecular Ecology, 11, 913 924.
18. Kumar S. Tamura K. Jakobsen I.B. Nei M. ( 2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Arizona State University, Tempe, Arizona.
19. Laird P.W. Zijderveld A. Linders K. Rudnicki M.A. Jaenisch R. Berns A. ( 1991) Simplified mammalian DNA procedure. Nucleic Acid Research, 19, 4293.
20. Latorre C. Betancourt J.L. Rylander K.A. Quade J. Matthei O. ( 2003) A vegetation history from the arid pre-Puna of northern Chile (22-23°S) over the last 13,500 years. Palaeogeography, Palaeoclimatology, Palaeoecology, 194, 223 246.
21. Longmire J.L. Lewis A.K. Brown N.C. Buckingham J.M. Clarck L.C. Jones M. D. Meincke L.J. Meyne J. Ratleef R.L. Ray F.A. Wagner R.P. Moyzis R.K. ( 1988) Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae. Genomics, 2, 14 24.
22. Maddison W.P. Maddison D.R. ( 1992) MacClade: analysis of phylogeny and character evolution, version 3.0. Sinauer Associates, Inc. Publishers, Sunderland, MA.
23. Mann G. ( 1978) Los Pequeños mamíferos de Chile. Gayana, Zoología, Universidad de Concepción, Concepción, Chile.
24. Marquet P.A. ( 1989) Paleobiogeography of South American cricetid rodents: a critics to Caviedes & Iriarte. Revista Chilena de Historia Natural, 62, 193 197.
25. Marquet P.A. ( 1994) Diversity of small mammals in the Pacific Coastal Desert of Peru and Chile and in the adjacent area: biogeography and community structure. Australian Journal of Zoology, 42, 527 542.
26. Marquet P.A. Bozinovic F. Bradshaw G.A. Cornelius C. González H. Gutiérrez J. R. Hajek E. Lagos J.A. López-Cortéz F. Nuñez L. Rosello E.F. Santoro C. Samaniego H. Standen V.G. Torres-Mura J.C. Jaksic F.M. ( 1998) Los ecosistemas del desierto de Atacama y área andina adyacente en el norte de Chile. Revista Chilena de Historia Natural, 71, 593 617.
27. Marshall L.G. Butler R.F. Drake R.E. Curtis G.H. Tedford R.H. ( 1979) Calibration of the Great American Interchange. Science, 204, 272 279.
28. Marshall L.G. Webb S.D. Sepkopski J.J., Jr. Raup D.M. ( 1982) Mammalian Evolution and the Great American Interchange. Science, 215, 1351 1357.
29. Meserve P.L. Kelt D.A. ( 1990) The role of aridity and isolation in Central Chilean small mammals: a reply to Caviedes and Iriarte 1989. Journal of Biogeography, 17, 681 684.
30. Moreno P. Villagrán C. Marquet P.A. Marshall L.G. ( 1994) Quaternary paleobiogeography of northern and central Chile. Revista Chilena de Historia Natural, 67, 487 502.
31. Murray V. ( 1989) Improved double-stranded DNA sequencing using the linear polymerase chain reaction. Nucleic Acid Research, 17, 8889.
32. Negrete-Córdova R. ( 1997) La vegetación en el Altiplano. El Altiplano: ciencia y Conciencia en los Andes. Actas del II Simposio Internacional de Estudios Altiplánicos, Arica, Chile ( ed. by R. Charrier pp. 161 165. Universidad de Chile, Santiago 522.
33. Palma R.E. Marin J.C. Spotorno A.E. Galaz J.L. ( 2001) Phylogenetic relationships among South American subspecies of camelids based on sequences of the cytochrome b mitochondrial gene. Progress in South American camelid research ( ed. by M. Gerken C. Renieri pp. 44 52. Wageningen Press, The Netherlands.
34. Pardiñas U.F.J. Tonni E.P. ( 1998) Procedencia estratigrá fica y edad de los más antiguos muroideos (Mammalia, Rodentia) de América del Sur. Ameghiniana, 35, 473 475.
35. Patterson B. Pascual R. ( 1972) The fossil mammal fauna of South America. Evolution, mammals, and southern continents ( ed. by A. Keast F.C. Erk B. Glass pp. 247 309. State University New York Press, New York.
36. Pearson O.P. Patton J.L. ( 1976) Relationships among South American phyllotine rodents based on chromosomal analyses. Journal of Mammalogy, 57, 339 350.
37. Pizzimenti J.J. De Salle R. ( 1980) Dietary and morphometric variation in some Peruvian rodent communities: the effect of feeding strategy on evolution. Biological Journal of the Linnean Society, 13, 263 285.
38. Posada D. Crandall K.A. ( 1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
39. Potts R. Behrensmeyer A.K. ( 1992) Late Cenozoic terrestrial ecosystems. Terrestrial ecosystems through time: evolutionary paleoecology of terrestrial plants and animals ( ed. by A.K. Behrensmeyer J.D. Damuth W.A. DiMichelle R. Potts H.D. Sues S.L. Wing pp. 419 451. University of Chicago Press, Chicago.
40. Redford K.H. Eisenberg J.F. ( 1992) Mammals of the Neotropics: the Southern Cone: Chile, Argentina, Uruguay, Paraguay, Vol. 2. University of Chicago Press, Chicago.
41. Reig O.A. ( 1986) Diversity patterns and differentiation of high Andean rodents. High altitude tropical biogeography ( ed. by F. Vuilleumier M. Monasterio pp. 404 439. Oxford University Press, New York.
42. Rohl A. ( 2000) Network: a program package for calculating phylogenetic networks, Version 4.1. Mathematisches Seminar, University of Hamburg, Hamburg ( http://www.fluxus-engineering.com q35).
43. Rozas J. Sánchez-DelBarrio J.C. Messeguer X. Rozas R. ( 2003) DnaSP, DNA polymorphism analysis by the coalescence and other methods. Bioinformatics, 19, 2496 2497.
44. Saiki R.K. Gelfand D.H. Stoffel S. Scharf S.J. Higuchi R. Horn G.T. Mullis K.B. Erlich H.A. ( 1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487 491.
45. Simpson G.G. ( 1980) Splendid isolation: the curious history of South American mammals. Yale University Press, New Haven, CT.
46. Smith M.F. Patton J.L. ( 1993) The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the Akodontine tribe. Biological Journal of the Linnean Society, 50, 149 177.
47. Smith M.F. Patton J.L. ( 1999) Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. Journal of Mammalian Evolution, 6, 89 128.
48. Smith M.J. Kelt D.A. Patton J.L. ( 2001) Testing models of diversification in mice in the Abrothrix olivaceus/xanthorhinus complex in Chile and Argentina. Molecular Ecology, 10, 397 405.
49. Spotorno A.E. ( 1986) Systematics and evolutionary relationships of Andean phyllotine and akodontine rodents. PhD Dissertation, University of California, Berkeley, CA.
50. Spotorno A.E. Walker L.I. Flores S.V. Yévenez M. Marín J.C. Zuleta C. ( 2001) Evolución de los filotinos (Rodentia, Muridae) en los Andes del Sur. Revista Chilena de Historia Natural, 74, 151 166.
51. Steppan S.J. ( 1995) Revisión of the tribe Phyllotini (Rodentia: Sigmodontinae), with a phylogenetic hypothesis for the Sigmodontinae. Fieldiana: Zoology, 80, 1 112.
52. Steppan S.J. ( 1998) Phylogenetic relationships and species limits within Phyllotis (Rodentia: Sigmodontinae): concordance between mtDNA sequence and morphology. Journal of Mammalogy, 79, 573 593.
53. Swofford D.L. ( 2002) PAUP*: phylogenetic analyses using parsimony (*and other methods). Version 4.0. Sinauer Associates, Inc., Publishers Sunderland, Massachusetts, USA.
54. Sylvestre F. Servant M. Servant-Vildary S. Causse C. Fournier M. Ybert J.P. ( 1999) Lake-level chronology on the Southern Bolivian Altiplano (18°-23°S) during Late Glacial time and the early Holocene. Quaternary Research, 51, 54 66.
55. Tajima F. ( 1989) The effect of change in population size on DNA polymorphism. Genetics, 123, 597 601.
56. Vuilleumier F. Monasterio M. (eds) ( 1986) High altitude tropical biogeography. Oxford University Press, New York.
57. Walsh P.S. Metzger D.A. Higuchi R. ( 1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques, 10, 506 513.
58. Webb S.D. ( 1991) Ecogeography of the Great American Interchange. Paleobiology, 17, 266 280.