-
1
-
-
0036640350
-
Origin and fate of repeats in bacteria
-
Achaz, G., Rocha, E. P. C., Netter, P. and Coissac, E. (2002). Origin and fate of repeats in bacteria. Nucleic Acids Res. 30, 2987-2994.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2987-2994
-
-
Achaz, G.1
Rocha, E.P.C.2
Netter, P.3
Coissac, E.4
-
2
-
-
0036072745
-
Tandem repeats in protein coding regions of primate genes
-
Borstnik, B. and Pumpernik, D. (2002). Tandem repeats in protein coding regions of primate genes. Genome Res. 12, 909-915.
-
(2002)
Genome Res.
, vol.12
, pp. 909-915
-
-
Borstnik, B.1
Pumpernik, D.2
-
3
-
-
19044366369
-
A tandem repeats database for bacterial genomes: Application to the genotyping of Yersinia pestis and Bacillus anthracis
-
Le Flèche, P., Hauck, Y., Onteniente, L., Prieur, A., Denoeud, F., Ramisse, V., Sylvestre, P., Benson, G., Ramisse, F. and Vergnaud, G. (2001). A tandem repeats database for bacterial genomes: Application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiology 1:2.
-
(2001)
BMC Microbiology
, vol.1
, pp. 2
-
-
Le Flèche, P.1
Hauck, Y.2
Onteniente, L.3
Prieur, A.4
Denoeud, F.5
Ramisse, V.6
Sylvestre, P.7
Benson, G.8
Ramisse, F.9
Vergnaud, G.10
-
4
-
-
0034946803
-
Differential distribution of simple sequence repeats in eukaryotic genome sequences
-
Katti, M. V., Ranjekar, P. K. and Gupta, V. S. (2001). Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol. Biol. Evol. 18, 1161-1167.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1161-1167
-
-
Katti, M.V.1
Ranjekar, P.K.2
Gupta, V.S.3
-
5
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian, H. H. jr. (2004). Mobile elements: Drivers of genome evolution. Science 303, 1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
6
-
-
0032843459
-
Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes
-
Rocha, E. P. C., Danchin, A. and Viari, A. (1999). Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes. Mol. Biol. Evol. 16, 1219-1230.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1219-1230
-
-
Rocha, E.P.C.1
Danchin, A.2
Viari, A.3
-
7
-
-
0036567258
-
Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution
-
Rocha, E. P. C. and Blanchard, A. (2002). Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution. Nucleic Acids Res. 30, 2031-2042.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2031-2042
-
-
Rocha, E.P.C.1
Blanchard, A.2
-
8
-
-
0037246879
-
MICdb: Database of prokaryotic microsatellites
-
Sreenu, V. B., Alevoor, V., Nagarajul, J. and Nagarajaram, H. A. (2003). MICdb: Database of prokaryotic microsatellites. Nucleic Acids Res. 31, 106-108.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 106-108
-
-
Sreenu, V.B.1
Alevoor, V.2
Nagarajul, J.3
Nagarajaram, H.A.4
-
9
-
-
0033396452
-
Tandem repeats in complete bacterial genome sequences: Sequence and structural analyses for comparative studies
-
Yeramian, E. and Buc, H. (1999). Tandem repeats in complete bacterial genome sequences: Sequence and structural analyses for comparative studies. Res. Microbiol. 150, 745-754.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 745-754
-
-
Yeramian, E.1
Buc, H.2
-
10
-
-
2342578691
-
Internal gene duplication in the evolution of prokaryotic transmembrane proteins
-
Shimizu, T., Mitsuke, H., Noto, K. and Arai, M. (2004). Internal gene duplication in the evolution of prokaryotic transmembrane proteins. J. Mol. Biol. 339, 1-15.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 1-15
-
-
Shimizu, T.1
Mitsuke, H.2
Noto, K.3
Arai, M.4
-
11
-
-
0035943351
-
The Evolution and Structural Anatomy of the Small Molecule Metabolic Pathways in Escherichia coli
-
Teichmann, S. A., Rison, S. C. G., Thornton, J. M., Riley, M., Gough, J. and Chothia, C. (2001). The Evolution and Structural Anatomy of the Small Molecule Metabolic Pathways in Escherichia coli. J. Mol. Biol. 311, 693-708.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 693-708
-
-
Teichmann, S.A.1
Rison, S.C.G.2
Thornton, J.M.3
Riley, M.4
Gough, J.5
Chothia, C.6
-
12
-
-
0842268045
-
Supra-domains: Evolutionary Units Larger than Single Protein Domains
-
Vogel, C., Berzuini, C., Bashton, M., Gough, J. and Teichmann, S. A. (2004). Supra-domains: Evolutionary Units Larger than Single Protein Domains. J. Mol. Biol. 336, 809-823.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 809-823
-
-
Vogel, C.1
Berzuini, C.2
Bashton, M.3
Gough, J.4
Teichmann, S.A.5
-
13
-
-
0036083579
-
Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity
-
Troyanskaya, O. G., Arbell, O., Koren, Y., Landau, G. M. and Bolshoy, A. (2002). Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity. Bioinformatics 18, 679-688.
-
(2002)
Bioinformatics
, vol.18
, pp. 679-688
-
-
Troyanskaya, O.G.1
Arbell, O.2
Koren, Y.3
Landau, G.M.4
Bolshoy, A.5
-
15
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe, K. H. and Shields, D. C. (1997). Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387, 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
16
-
-
1942452749
-
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
-
Kellis, M., Birren, B. W. and Lander, E. S. (2004). Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428, 617-624.
-
(2004)
Nature
, vol.428
, pp. 617-624
-
-
Kellis, M.1
Birren, B.W.2
Lander, E.S.3
-
17
-
-
0036613237
-
Extensive genomtc duplication during early chordate evolution
-
McLysaght, A., Hokamp, K. and Wolfe, K. H. (2002). Extensive genomtc duplication during early chordate evolution. Nat. Genet. 31, 200-204.
-
(2002)
Nat. Genet.
, vol.31
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
18
-
-
18244396380
-
Causes for the large genome size in a cyanobacterium Anabaena sp. PCC7120
-
Sugaya, N., Sato, M., Murakami, H., Imaizumi, A., Aburatani, S. and Horimoto, K. (2004). Causes for the large genome size in a cyanobacterium Anabaena sp. PCC7120. Genome Inform. 15, 229-238.
-
(2004)
Genome Inform
, vol.15
, pp. 229-238
-
-
Sugaya, N.1
Sato, M.2
Murakami, H.3
Imaizumi, A.4
Aburatani, S.5
Horimoto, K.6
-
19
-
-
0030825816
-
Residual colours: A proposal for aminochromography
-
Taylor, W. R. (1997). Residual colours: A proposal for aminochromography. Protein Eng. 10, 743-746.
-
(1997)
Protein Eng.
, vol.10
, pp. 743-746
-
-
Taylor, W.R.1
-
20
-
-
0034607545
-
Color-coding reveals tandem repeats in the Escherichia coli genome
-
Yoshida, T., Obata, N. and Oosawa, K. (2000). Color-coding reveals tandem repeats in the Escherichia coli genome. J. Mot. Biol. 298, 343-349.
-
(2000)
J. Mot. Biol.
, vol.298
, pp. 343-349
-
-
Yoshida, T.1
Obata, N.2
Oosawa, K.3
-
21
-
-
33745186307
-
Sputnik. Source code available via FTP server
-
Abajian, C. (1994). Sputnik. Source code available via FTP server. http://espressosoftware.com/pages/sputnik.jsp.
-
(1994)
-
-
Abajian, C.1
-
22
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson, G. (1999). Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
23
-
-
0033066718
-
REPuter: Fast computation of maximal repeats in complete genomes
-
Kurtz, S. and Schleiermacher, C. (1999). REPuter: Fast computation of maximal repeats in complete genomes. Bioinformatics 15, 426-427.
-
(1999)
Bioinformatics
, vol.15
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
24
-
-
0035999989
-
TROLL - Tandem repeat occurrence locator
-
Castelo, A. T., Martins, W. and Gao, G. R. (2002). TROLL - tandem repeat occurrence locator. Bioinformatics 18, 634-636.
-
(2002)
Bioinformatics
, vol.18
, pp. 634-636
-
-
Castelo, A.T.1
Martins, W.2
Gao, G.R.3
-
25
-
-
0037433046
-
FORRepeats: Detects repeats on entire chromosomes and between genomes
-
Lefebvre, A., Lecroq, T., Dauchel, H. and Alexandre, J. (2003). FORRepeats: Detects repeats on entire chromosomes and between genomes. Bioinformatics 19, 319-326.
-
(2003)
Bioinformatics
, vol.19
, pp. 319-326
-
-
Lefebvre, A.1
Lecroq, T.2
Dauchel, H.3
Alexandre, J.4
-
26
-
-
18244405741
-
Evaluation of the color-coding method for searching tandem repeats in prokaryotic genomes
-
Mizuta, S., Munakata, H., Aimaiti, A., Oosawa, K. and Shimizu, T. (2004). Evaluation of the color-coding method for searching tandem repeats in prokaryotic genomes. Chem-Bio Inform. J. 4, 133-141.
-
(2004)
Chem-Bio Inform. J.
, vol.4
, pp. 133-141
-
-
Mizuta, S.1
Munakata, H.2
Aimaiti, A.3
Oosawa, K.4
Shimizu, T.5
-
27
-
-
0345865009
-
GenBank: Update
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. and Wheeler, D. L. (2004). GenBank: Update. Nucleic Acids Res. 32, D23-D26.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
28
-
-
0026689286
-
A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae
-
Martin, B., Humbert, O., Camara, M., Guenzi, E., Walker, J., Mitchell, T., Andrew, P., Prudhomme, M., Alloing, G., Hakenbeck, R., Morrison, D. A., Boulnois, G. J. and Claverys, J.-P. (1992). A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res. 20, 3479-3483.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3479-3483
-
-
Martin, B.1
Humbert, O.2
Camara, M.3
Guenzi, E.4
Walker, J.5
Mitchell, T.6
Andrew, P.7
Prudhomme, M.8
Alloing, G.9
Hakenbeck, R.10
Morrison, D.A.11
Boulnois, G.J.12
Claverys, J.-P.13
-
29
-
-
0032824652
-
Repeated extragenic sequences in prokaryotic genomes: A proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae
-
Oggioni, M. R. and Claverys, J.-P. (1999). Repeated extragenic sequences in prokaryotic genomes: A proposal for the origin and dynamics of the RUP element in Streptococcus pneumoniae. Microbiology 145, 2647-2653.
-
(1999)
Microbiology
, vol.145
, pp. 2647-2653
-
-
Oggioni, M.R.1
Claverys, J.-P.2
-
30
-
-
0030884601
-
A comparative study of duplications in bacteria and eukaryotes: The importance of telomeres
-
Coissac, E., Maillier, E. and Netter, P. (1997). A comparative study of duplications in bacteria and eukaryotes: The importance of telomeres. Mol. Biol. Evol. 14, 1062-1074.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1062-1074
-
-
Coissac, E.1
Maillier, E.2
Netter, P.3
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