Numerical comparison of Wang-Landau sampling and parallel tempering for met-enkephalin

International Journal of Modern Physics C

Volumn 17, Issue 6, 2006, Pages 817-824

  Junghans, C ^a,b   Hansmann, U H E ^a,c  

^a FORSCHUNGSZENTRUM JÜLICH   (Germany)

^b UNIVERSITY OF LEIPZIG   (Germany)

^c MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

Author keywords

Extended ensemble; Multicanonical Monte Carlo; Multiple minima problem; Parallel tempering; Protein folding; Replica Monte Carlo; Wang Landau algorithm

Indexed keywords

EID: 33745174827     PISSN: 01291831     EISSN: None     Source Type: Journal    
DOI: 10.1142/S012918310600931X     Document Type: Article

References (12)

1. Y. Iba, Int. J. Mod. Phys. C 12, 623 (2001).
2. N. Metropolis et al., J. Chem. Phys. 21, 1087 (1953).
3. K. Hukushima and K. Nemoto, J. Phys. Soc. (Jap.) 65, 1604 (1996).
4. U. H. E. Hansmann, Chem. Phys. Lett. 281, 140 (1997).
5. G. M. Torrie and J. P. Valleau, J. Phys. Comp. Phys. 23, 187 (1977).
6. F. Wang and D. P. Landau, Phys. Rev. E 64, 056101 (2001).
7. B. A. Berg and T. Neuhaus, Phys. Rev. Lett. 68, 9 (1992).
8. G. Némethy et al., J. Phys. Chem. 96, 6472 (1992).
9. F. Eisenmenger et al., Comput. Phys. Commun. 138, 192 (2001), available from www.phy.mtu.edu/biophys/smmp.htm.
10. A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 61, 2635 (1988).
11. B. Efron, The Jackknife, the Bootstrap and Other Resampling Plans (SIAM, Philadelphia, 1982).
12. R. G. Miller, Biometrika 61, 1 (1974).