Acidophilic microbial communities catalyzing sludge bioleaching monitored by fluorescent in situ hybridization

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 89, Issue 3-4, 2006, Pages 435-442

  Bouchez, Théodore ^a   Jacob, Pauline ^a   d'Hugues, Patrick ^b   Durand, Alice ^a  

^a Procédés biotechnologiques au service de l'environnement   (France)

^b BRGM   (France)

Author keywords

Acidithiobacillus caldus; Acidophilic microbial communities; FISH; Sludge bioleaching

Indexed keywords

RIBOSOME RNA; SULFUR;

CATALYSIS; HYBRIDIZATION; LEACHING; MICROBIAL COMMUNITY; SLUDGE;

ACIDITHIOBACILLUS; ACIDITHIOBACILLUS FERROOXIDANS; ACIDITHIOBACILLUS THIOOXIDANS; ALPHAPROTEOBACTERIA; ARTICLE; BIOLEACHING; CONTROLLED STUDY; ENVIRONMENTAL MONITORING; FLUORESCENCE IN SITU HYBRIDIZATION; GAMMAPROTEOBACTERIA; INCUBATION TIME; MICROFLORA; NONHUMAN; OLIGONUCLEOTIDE PROBE; OXIDATION; PH; PRIORITY JOURNAL; PROTEIN TARGETING; SLUDGE TREATMENT; SPECIES DIFFERENCE;

ACIDITHIOBACILLUS; ARCHAEA; BIOREACTORS; CATALYSIS; ECOSYSTEM; GAMMAPROTEOBACTERIA; HYDROGEN-ION CONCENTRATION; IN SITU HYBRIDIZATION, FLUORESCENCE; OLIGONUCLEOTIDE PROBES; SEWAGE; SULFUR; WASTE DISPOSAL, FLUID;

ACIDITHIOBACILLUS; ACIDITHIOBACILLUS CALDUS; ACIDITHIOBACILLUS FERROOXIDANS; ALPHAPROTEOBACTERIA; ARCHAEA; GAMMAPROTEOBACTERIA;

EID: 33745142842     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-005-9052-8     Document Type: Article

References (28)

1. Amann R.I., Krumholz L., Stahl D.A. (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770
2. Amann R.I., Ludwig W., Schleifer K-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169
3. Baker B.J., Banfield J.F. (2003) Microbial communities in acid mine drainage. FEMS Microbiol. Ecol. 44:139-152
4. Blais J.F., Meunier N., Mercier G., Drogui P., Tyagi R.D. (2004) Pilot plant study of simultaneous sewage sludge digestion and metal leaching. J. Environ. Eng.-Asce 130:516-525
5. Blais J.F., Meunier N., Tyagi R.D. (1997) Simultaneous sewage sludge digestion and metal leaching at controlled pH. Environ. Technol. 18:499-508
6. Bond P.L., Banfield J.F. (2001) Design and performance of rRNA targeted oligonucleotide probes for in situ detection and phylogenetic identification of microorganisms inhabiting acid mine drainage environments. Microb. Ecol. 41:149-161
7. Bond P.L., Smriga S.P., Banfield J.F. (2000) Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Appl. Environ. Microbiol. 66:3842-3849
8. Daims H., Bruhl A., Amann R., Schleifer K.H., Wagner M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444
9. Daims H., Nielsen J.L., Nielsen P.H., Schleifer K.H., Wagner M. (2001) In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants. Appl. Environ. Microbiol. 67:5273-5284
10. Edwards K.J., Bond P.L., Banfield J.F. (2000) Characteristics of attachment and growth of Thiobacillus caldus on sulfide minerals: A chemotactic response to sulfur minerals?. Environ. Microbiol. 2:324-332
11. Filali-Meknassi Y., Tyagi R.D., Narasiah K.S. (2000) Simultaneous sewage sludge digestion and metal leaching: Effect of aeration. Process Biochem. 36:263-273
12. Gamache M., Blais J., Tyagi R., Meunier N. (2001) Heterotrophic microflora involved in the simultaneous process of metal bioleaching and sewage sludge digestion. Can. J. Civil Eng. 28:158-174
13. Gu X.Y., Wong J.W.C. (2004) Characterization of an indigenous iron-oxidizing bacterium and its effectiveness in bioleaching heavy metals from anaerobically digested sewage sludge. Environ. Technol. 25:889-897
14. Hallberg K.B. and Johnson D.B. 2001. Biodiversity of acidophilic prokaryotes. In: Advances in Applied Microbiology, Vol. 49. Academic Press Inc., San Diego, pp. 37-84
15. Jain D.K., Tyagi R.D. (1992) Leaching of heavy-metals from anaerobic sewage-sludge by sulfur-oxidizing bacteria. Enzyme Microb. Technol. 14:376-383
16. Johnson D.B. (1998) Biodiversity and ecology of acidophilic microorganisms. FEMS Microbiol. Ecol. 27:307-317
17. Kusel K., Pinkart H.C., Drake H.L., Devereux R. (1999) Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the sea grass Halodule wrightii. Appl. Environ. Microbiol. 65:5117-5123
18. Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria - problems and solutions. Syst. Appl. Microbiol. 15:593-600
19. Olson G.J., Brierley J.A., Brierley C.L. (2003) Bioleaching review part B: Progress in biolAaching: applications of microbial processes by the minerals industries. Appl. Microbiol. Biotechnol. 63:249-257
20. Peccia J., Marchand E.A., Silverstein J., Hernandez M. (2000) Development and application of small-subunit rRNA probes for assessment of selected Thiobacillus species and members of the genus Acidiphilium. Appl. Environ. Microbiol. 66:3065-3072
21. Roller C., Wagner M., Amann R., Ludwig W., Schleifer K.H. (1994) In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology 140:2849-2858
22. Schrenk M.O., Edwards K.J., Goodman R.M., Hamers R.J., Banfield J.F. (1998) Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: Implications for generation of acid mine drainage. Science 279:1519-1522
23. Sreekrishnan T.R., Tyagi R.D. (1996) A comparative study of the cost of leaching out heavy metals from sewage sludges. Process Biochem. 31:31-41
24. Sreekrishnan T.R., Tyagi R.D., Blais J.F., Meunier N., Campbell P.G.C. (1996) Effect of sulfur concentration on sludge acidification during the SSDML process. Water Res. 30:2728-2738
25. Stahl D.A., Amann R. (1991) Development and application of nucleic acid probes. In: Stackebrandt E., Goodfellow M. (eds), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons Ltd., Chichester, England edn, pp. 205-248
26. Tyagi R., Rajeshwar D., Blais J., Auclair J.F. and Jean C. 1995. Semi-continuous bacterial leaching process. In: US patent & trademark office. INRS, United-States
27. Tyagi R., Rajeshwar D., Jain D.K., Devender K. and Couillard D. 1993. Bacterial leaching process and composition. In: US patent & trademark office. INRS, United-States
28. Tyson G.W. et al (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37-43