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Volumn 21, Issue 4, 2005, Pages 390-395

Targeting optimal introns for phylogenetic analyses in non-model taxa: Experimental results in Asian pitvipers

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFICATION; DNA; GENE EXPRESSION; HETEROZYGOSITY; PHYLOGENETICS; SNAKE; TAXONOMY;

EID: 33745141566     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2005.00072.x     Document Type: Article
Times cited : (22)

References (40)
  • 2
    • 0036592401 scopus 로고    scopus 로고
    • Robustness of ancestral state estimates: Evolution of life history strategy in ichneumonoid parasitoids
    • Belshaw R. Quicke D.L.J., 2002. Robustness of ancestral state estimates: evolution of life history strategy in ichneumonoid parasitoids. Syst. Biol. 5, 450 477.
    • (2002) Syst. Biol. , vol.5 , pp. 450-477
    • Belshaw, R.1    Quicke, D.L.J.2
  • 3
    • 0036898739 scopus 로고    scopus 로고
    • Phylogenetic discordance at the species boundary: Comparative gene genealogies among rapidly radiating Heliconius butterflies
    • Beltrán M. Jiggins C.D. Bull. V. Linares M. Mallet J. McMillan W.O. Bermingham E., 2002. Phylogenetic discordance at the species boundary: comparative gene genealogies among rapidly radiating Heliconius butterflies. Mol. Biol. Evol. 19, 2176 2190.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2176-2190
    • Beltrán, M.1    Jiggins, C.D.2    Bull., V.3    Linares, M.4    Mallet, J.5    McMillan, W.O.6    Bermingham, E.7
  • 4
    • 0036428526 scopus 로고    scopus 로고
    • Phylogenetic relationships within the Phyllopoda (Crustacea, Branchiopoda) based on mitochondrial and nuclear markers
    • Braband A. Richter S. Hiesel R. Schlotte G., 2002. Phylogenetic relationships within the Phyllopoda (Crustacea, Branchiopoda) based on mitochondrial and nuclear markers. Mol. Phyl. Evol. 25, 229 244.
    • (2002) Mol. Phyl. Evol. , vol.25 , pp. 229-244
    • Braband, A.1    Richter, S.2    Hiesel, R.3    Schlotte, G.4
  • 5
    • 0043074683 scopus 로고    scopus 로고
    • Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus Trimeresurus: Separate, simultaneous, and conditional data combination analyses
    • Creer S. Malhotra A. Thorpe R.S., 2003. Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus Trimeresurus: Separate, simultaneous, and conditional data combination analyses. Mol. Biol. Evol. 20, 1240 1251.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1240-1251
    • Creer, S.1    Malhotra, A.2    Thorpe, R.S.3
  • 6
    • 0002961018 scopus 로고    scopus 로고
    • Nucleic acids III: Analysis of fragments and restriction sites
    • In: Hillis, D.M. Mable, B.K. Moritz, C. (Eds. Sinauer Associates, Sunderland, MA., pp.
    • Dowling T.E. Moritz C. Palmer J.D. Rieseberg L.M., 1996. Nucleic acids III: Analysis of fragments and restriction sites. In: Hillis D.M. Mable B.K. Moritz C. (Eds Molecular Systematics, 2nd edn. Sinauer Associates, Sunderland, MA, pp. 249 320.
    • (1996) Molecular Systematics, 2nd Edn. , pp. 249-320
    • Dowling, T.E.1    Moritz, C.2    Palmer, J.D.3    Rieseberg, L.M.4
  • 7
    • 0036395706 scopus 로고    scopus 로고
    • Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds
    • Ericson P.G.P. Christidis L. Irestedt M. Norman J.A., 2002. Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birds. Mol. Phyl. Evol. 25, 53 62.
    • (2002) Mol. Phyl. Evol. , vol.25 , pp. 53-62
    • Ericson, P.G.P.1    Christidis, L.2    Irestedt, M.3    Norman, J.A.4
  • 8
    • 0032087257 scopus 로고    scopus 로고
    • Phylogeny of the Carnivora (Mammalia): Congruence vs. incompatability among multiple data sets
    • Flynn J.J. Nedbal M.A., 1998. Phylogeny of the Carnivora (Mammalia): Congruence vs. incompatability among multiple data sets. Mol. Phyl. Evol. 9, 414 426.
    • (1998) Mol. Phyl. Evol. , vol.9 , pp. 414-426
    • Flynn, J.J.1    Nedbal, M.A.2
  • 9
    • 0001557265 scopus 로고    scopus 로고
    • Introns
    • In: Baker, A.J. (Ed.), Blackwell Science., pp.
    • Friesen V.L., 2000. Introns. In: Baker A.J. (Ed.), Molecular Methods in Ecology. Blackwell Science, pp. 274 294.
    • (2000) Molecular Methods in Ecology. , pp. 274-294
    • Friesen, V.L.1
  • 10
    • 0033376277 scopus 로고    scopus 로고
    • Polymerase chain reaction (PCR) primers for the amplification of five nuclear introns in vertebrates
    • Friesen V.L. Congdon B.C. Kidd M.G. Birt T.P., 1999. Polymerase chain reaction (PCR) primers for the amplification of five nuclear introns in vertebrates. Mol. Ecol. 8, 2141 2152.
    • (1999) Mol. Ecol. , vol.8 , pp. 2141-2152
    • Friesen, V.L.1    Congdon, B.C.2    Kidd, M.G.3    Birt, T.P.4
  • 11
    • 0031282235 scopus 로고    scopus 로고
    • Intron variation in marbled murrelets detected using analyses of single-stranded conformational polymorphisms
    • Friesen V.L. Congdon B.C. Walsh H.E. Birt T.P., 1997. Intron variation in marbled murrelets detected using analyses of single-stranded conformational polymorphisms. Mol. Ecol. 6, 1047 1058.
    • (1997) Mol. Ecol. , vol.6 , pp. 1047-1058
    • Friesen, V.L.1    Congdon, B.C.2    Walsh, H.E.3    Birt, T.P.4
  • 13
    • 0036659318 scopus 로고    scopus 로고
    • Oligonucleotide primers for PCR amplification of coelomate introns
    • Jarman S.N. Ward R.D. Elliot N.G., 2002. Oligonucleotide primers for PCR amplification of coelomate introns. Mar. Biotechnol. 4, 347 355.
    • (2002) Mar. Biotechnol. , vol.4 , pp. 347-355
    • Jarman, S.N.1    Ward, R.D.2    Elliot, N.G.3
  • 14
    • 0034903755 scopus 로고    scopus 로고
    • Phylogenetic analyses of two mitochondrial genes and one nuclear intron region illuminate European subterranean termite (Isoptera: Rhinotermitidae) gene flow, taxonomy, and introduction dynamics
    • Jenkins T.M. Dean R.E. Verkerk R. Forschler B.T., 2001. Phylogenetic analyses of two mitochondrial genes and one nuclear intron region illuminate European subterranean termite (Isoptera: Rhinotermitidae) gene flow, taxonomy, and introduction dynamics. Mol. Phyl. Evol. 20, 286 293.
    • (2001) Mol. Phyl. Evol. , vol.20 , pp. 286-293
    • Jenkins, T.M.1    Dean, R.E.2    Verkerk, R.3    Forschler, B.T.4
  • 15
    • 0033936592 scopus 로고    scopus 로고
    • Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
    • Johnson K.P. Clayton D.H., 2000. Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol. Phyl. Evol. 14, 141 151.
    • (2000) Mol. Phyl. Evol. , vol.14 , pp. 141-151
    • Johnson, K.P.1    Clayton, D.H.2
  • 17
    • 0026600305 scopus 로고
    • Rapid surveying of DNA sequence variation in natural populations
    • Lessa E.P., 1992. Rapid surveying of DNA sequence variation in natural populations. Mol. Biol. Evol. 9, 323 330.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 323-330
    • Lessa, E.P.1
  • 18
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
    • Lutzoni F. Wagner P. Reeb V. Zoller S., 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst. Biol. 49, 628 651.
    • (2000) Syst. Biol. , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3    Zoller, S.4
  • 19
    • 2942703379 scopus 로고    scopus 로고
    • A phylogeny of four mitochondrial gene regions suggests a revised taxonomy for Asian pitvipers (Trimeresurus and Ovophis)
    • Malhotra A. Thorpe R.S., 2004. A phylogeny of four mitochondrial gene regions suggests a revised taxonomy for Asian pitvipers (Trimeresurus and Ovophis). Mol. Phyl. Evol. 32, 83 100.
    • (2004) Mol. Phyl. Evol. , vol.32 , pp. 83-100
    • Malhotra, A.1    Thorpe, R.S.2
  • 20
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees
    • Moore W.S., 1995. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution. 49, 718 726.
    • (1995) Evolution. , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 22
    • 0033113839 scopus 로고    scopus 로고
    • Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa
    • Oakley T.H. Phillips R.B., 1999. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Mol. Phyl. Evol. 11, 381 393.
    • (1999) Mol. Phyl. Evol. , vol.11 , pp. 381-393
    • Oakley, T.H.1    Phillips, R.B.2
  • 23
    • 0033824430 scopus 로고    scopus 로고
    • Examination of species boundaries in the Acropora cervicornis group (Scleractina, Cnidaria) using nuclear DNA sequence analyses
    • van Oppen M.J.H. Willis B.L. van Vugt H.W.J.A. Miller D.J., 2000. Examination of species boundaries in the Acropora cervicornis group (Scleractina, Cnidaria) using nuclear DNA sequence analyses. Mol. Ecol. 9, 1363 1373.
    • (2000) Mol. Ecol. , vol.9 , pp. 1363-1373
    • Van Oppen, M.J.H.1    Willis, B.L.2    Van Vugt, H.W.J.A.3    Miller, D.J.4
  • 24
    • 0001829453 scopus 로고    scopus 로고
    • Nucleic acids III: The polymerase chain reaction
    • In: Hillis, D.M. Moritz, C. Mable, B.K. (Eds. Sinauer Associates, Sunderland, MA., pp.
    • Palumbi S.R., 1996. Nucleic acids III: The polymerase chain reaction. In: Hillis D.M. Moritz C. Mable B.K. (Eds Molecular Systematics, 2nd edn. Sinauer Associates, Sunderland, MA, pp. 205 248.
    • (1996) Molecular Systematics, 2nd Edn. , pp. 205-248
    • Palumbi, S.R.1
  • 25
    • 0028354921 scopus 로고
    • Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales
    • Palumbi S.R. Baker C.S., 1994. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11, 426 435.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 426-435
    • Palumbi, S.R.1    Baker, C.S.2
  • 26
    • 0033860221 scopus 로고    scopus 로고
    • Population subdivision in Europe's great bustard inferred from mitochondrial and nuclear DNA sequence variation
    • Pitra C. Lieckfeldt D. Alonso J.C., 2000. Population subdivision in Europe's great bustard inferred from mitochondrial and nuclear DNA sequence variation. Mol. Ecol. 9, 1165 1170.
    • (2000) Mol. Ecol. , vol.9 , pp. 1165-1170
    • Pitra, C.1    Lieckfeldt, D.2    Alonso, J.C.3
  • 27
    • 4644298067 scopus 로고    scopus 로고
    • Using exon and intron sequences of the gene Mp20 to resolve basal relationships in Cicindela (Coleoptera: Cicindelidae)
    • Pons J. Barraclough T.G. Theodorides K. Cardoso A. Vogler A.P., 2004. Using exon and intron sequences of the gene Mp20 to resolve basal relationships in Cicindela (Coleoptera: Cicindelidae). Syst. Biol. 53, 554 570.
    • (2004) Syst. Biol. , vol.53 , pp. 554-570
    • Pons, J.1    Barraclough, T.G.2    Theodorides, K.3    Cardoso, A.4    Vogler, A.P.5
  • 28
    • 0031255043 scopus 로고    scopus 로고
    • The utility of DNA sequences of an intron from the β-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)
    • Prychitko T.M. Moore W.S., 1997. The utility of DNA sequences of an intron from the β-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phyl. Evol. 8, 193 204.
    • (1997) Mol. Phyl. Evol. , vol.8 , pp. 193-204
    • Prychitko, T.M.1    Moore, W.S.2
  • 29
    • 0033934006 scopus 로고    scopus 로고
    • Comparative evolution of the mitochondrial cytochrome b gene and nuclear β-fibrinogen intron 7 in woodpeckers
    • Prychitko T.M. Moore W.S., 2000. Comparative evolution of the mitochondrial cytochrome b gene and nuclear β-fibrinogen intron 7 in woodpeckers. Mol. Biol. Evol. 17, 1101 1111.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1101-1111
    • Prychitko, T.M.1    Moore, W.S.2
  • 30
    • 0034775422 scopus 로고    scopus 로고
    • Phylogenetics of Planipapillus, lawn-headed onychophorans of the Australian Alps, based on nuclear and mitochondrial gene sequences
    • Rockman M.V. Rowell D.M. Tait N.N., 2001. Phylogenetics of Planipapillus, lawn-headed onychophorans of the Australian Alps, based on nuclear and mitochondrial gene sequences. Mol. Phyl. Evol. 21, 103 116.
    • (2001) Mol. Phyl. Evol. , vol.21 , pp. 103-116
    • Rockman, M.V.1    Rowell, D.M.2    Tait, N.N.3
  • 31
    • 33745163154 scopus 로고    scopus 로고
    • Code available at
    • Rosen S. Skaletsky H.J., 1998. Primer3. Code available at http://www-genome.wi.mit.edu/genomesoftware/other/primer3.html.
    • (1998)
    • Rosen, S.1    Skaletsky, H.J.2
  • 32
    • 0036191081 scopus 로고    scopus 로고
    • Phylogenetic relationships, ecological correlates, and molecular evolution within the Cavioidea (Mammalia, Rodentia)
    • Rowe D.L. Honeycutt R.L., 2002. Phylogenetic relationships, ecological correlates, and molecular evolution within the Cavioidea (Mammalia, Rodentia). Mol. Biol. Evol. 19, 263 277.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 263-277
    • Rowe, D.L.1    Honeycutt, R.L.2
  • 33
    • 0034984410 scopus 로고    scopus 로고
    • The phylogenetic analysis of variable-length sequence data: Elongation factor-1α introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae)
    • Sanchis A. Michelena J.M. Latorre A. Quicke D.L.J. Gärdenfors U. Belshaw R., 2001. The phylogenetic analysis of variable-length sequence data: elongation factor-1α introns in European populations of the parasitoid wasp genus Pauesia (Hymenoptera: Braconidae: Aphidiinae). Mol. Biol. Evol. 18, 1117 1131.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1117-1131
    • Sanchis, A.1    Michelena, J.M.2    Latorre, A.3    Quicke, D.L.J.4    Gärdenfors, U.5    Belshaw, R.6
  • 34
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons M.P. Ochoterena H., 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49, 369 381.
    • (2000) Syst. Biol. , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 35
    • 0027739757 scopus 로고
    • Rapid assessment of single-copy nuclear DNA variation in diverse species
    • Slade R.W. Moritz C. Heidemann A. Hale P.T., 1993. Rapid assessment of single-copy nuclear DNA variation in diverse species. Mol. Ecol. 2, 359 373.
    • (1993) Mol. Ecol. , vol.2 , pp. 359-373
    • Slade, R.W.1    Moritz, C.2    Heidemann, A.3    Hale, P.T.4
  • 36
    • 0037216125 scopus 로고    scopus 로고
    • Reconstructing species phylogeny of the carabid beetles Ohomopterus using multiple nuclear DNA sequences: Heterogenous information content and the performance of simultaneous analyses
    • Sota T. Vogler A.P., 2003. Reconstructing species phylogeny of the carabid beetles Ohomopterus using multiple nuclear DNA sequences: heterogenous information content and the performance of simultaneous analyses. Mol. Phyl. Evol. 26, 139 154.
    • (2003) Mol. Phyl. Evol. , vol.26 , pp. 139-154
    • Sota, T.1    Vogler, A.P.2
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D. Gibson T.J. Plewniak F. Jeanmougin F. Higgins D.G., 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24, 4876 4882.
    • (1997) Nucl. Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 0036368055 scopus 로고    scopus 로고
    • A test of a mitochondrial gene-based phylogeny of woodpeckers (genus Picoides) using an independent nuclear gene β-Fibrinogen intron 7
    • Weibel A.C. Moore W.S., 2002. A test of a mitochondrial gene-based phylogeny of woodpeckers (genus Picoides) using an independent nuclear gene β-Fibrinogen intron 7. Mol. Phyl. Evol. 22, 247 257.
    • (2002) Mol. Phyl. Evol. , vol.22 , pp. 247-257
    • Weibel, A.C.1    Moore, W.S.2
  • 39
    • 0036005519 scopus 로고    scopus 로고
    • Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus)
    • Wiens J.J. Penkrot T.A., 2002. Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Sys. Biol. 51, 69 91.
    • (2002) Sys. Biol. , vol.51 , pp. 69-91
    • Wiens, J.J.1    Penkrot, T.A.2
  • 40
    • 0037350984 scopus 로고    scopus 로고
    • Nuclear DNA analyses in genetic studies of populations: Practice, problems and prospects
    • Zhang D.-X. Hewitt G.M., 2003. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Mol. Ecol. 12, 563 584.
    • (2003) Mol. Ecol. , vol.12 , pp. 563-584
    • Zhang, D.-X.1    Hewitt, G.M.2


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