Spatial differentiation in the eastern Pacific yellowfin tuna revealed by microsatellite variation

Fisheries Science

Volumn 72, Issue 3, 2006, Pages 590-596

  Díaz Jaimes, Pindaro ^a   Uribe Alcocer, Manuel ^a  

^a UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Molecular markers; Population genetics; Stock structure; Yellowfin tuna

Indexed keywords

SCOMBRIDAE GEN. SP.; THUNNUS ALBACARES;

EID: 33745082804     PISSN: 09199268     EISSN: 14442906     Source Type: Journal    
DOI: 10.1111/j.1444-2906.2006.01188.x     Document Type: Article

References (43)

1. Food and Agricultural Organization of United Nations (FAO). FISHSTAT Plus Ver. 2.3. Universal software for fishery statistical time series. Fisheries Department, Fishery Information, Data and Statistics Unit, Rome. 2000.
2. Godsil HC Greenhood EC. A comparison of the populations of yellowfin tuna (Neothunnus macropterus) from the eastern and central Pacific. Calif. Dept Fish Game Fish. Bull. 1951 82 : 33p.
3. Schaefer MB. Morphometric comparison of yellowfin tuna from southeast Polynesia, Central America, and Hawaii. Inter-Am. Trop. Tuna Comm. Bull. 1955 1 : 89 136.
4. Kurogane K Hiyama Y. Morphometric comparison of the yellowfin tuna taken from the Equatorial Pacific. Jpn. Soc. Sci. Fish. Bull. 1957 23 : 388 293.
5. Schaefer KM. Morphometric analysis of yellowfin tuna, Thunnus albacares, from the eastern Pacific ocean. Bull. Inter-Am. Trop. Tuna Comm. 1989 19 : 387 427.
6. Schaefer KM. Geographical variation in morphometric characters and gill-raker counts of yellowfin tuna Thunnus albacares, from the Pacific Ocean. Fish. Bull. 1991 91 : 690 698.
7. Suzuki Z Tomlinson PK Honma M. Population structure of Pacific Yellowfin tuna. Bull. Inter-Am. Trop. Tuna Comm. 1978 17 : 273 441.
8. Fink BD Bayliff WH. Migrations of yellowfin and skipjack tuna in the eastern Pacific Ocean as determined by tagging experiments, 1952-64. Inter-Am. Trop. Tuna Comm. Bull. 1970 15 : 1 227.
9. Barret I Tsuyuki H. Serum transferrin polymorphism in some scombroid fishes. Copeia 1967 3 : 551 557.
10. Fujino K. Immunological and biochemical genetics of tunas. Trans. Am. Fish. Soc. 1970 99 : 152 178.
11. IATTC (Inter-American Tropical Tuna Commission). Annual report of the Inter-American Tropical Tuna Commission. IATTC, LaJolla, CA. 1975.
12. Scoles DR Graves JE. Genetic analysis of the population structure of yellowfin tuna, Thunnus albacares, from the Pacific Ocean. Fish. Bull. 1993 91 : 690 698.
13. Ward RD Elliott NG Grewe PM Smolenski A. Allozyme and mitochondrial DNA variation in yellowfin tuna (Thunnus albacares) from the Pacific Ocean. Mar. Biol. 1994 118 : 531 539.
14. Sharp GD. Behavioral and physiological properties of tunas and their effects on vulnerability to fishing gear. In : Sharp GD Dizon AE (eds). The Physiological Ecology of Tunas. Academic Press, New York. 1978 397 449.
15. Ward RD Elliott NG Innes BH Smolenski AJ Grewe PM. Global population structure of yellowfin tuna, Thunnus albacares, inferred from allozyme and mitochondrial DNA variation. Fish. Bull. 1997 95 : 566 575.
16. Appleyard SA Grewe PM Innes BH Ward RD. Population structure of yellowfin tuna (Thunnus albacares) in the western Pacific Ocean, inferred from microsatellite loci. Mar. Biol. 2001 139 : 383 393.
17. Bentzen P Taggart TC Ruzzante DE Cook D. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic. Can. J. Fish. Aquat. Sci. 1996 53 : 2706 2721.
18. Gold JR Kristmundsdóttir ÁÝ Richardson LR. Mitochondrial DNA variation in king mackerel (Scomberomorus cavalla) from the western Atlantic Ocean and Gulf of Mexico. Mar. Biol. 1997 129 : 221 232.
19. Grant SW Clark AM Bowen BW. Why restriction fragment length polymorphism analysis of mitochondrial DNA failed to resolve sardine (Sardinops) biogeography: insights from mitochondrial DNA cytochrome b sequences. Can. J. Fish. Aquat. Sci. 1998 55 : 2539 2547.
20. O'Conell M Wright JM. Microsatellite DNA in fishes. Rev. Fish Biol. Fish 1997 7 : 331 363.
21. Hoffman IJ Amos W. Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Mol. Ecol. 2005 14 : 599 612.
22. McDowell JR Diaz-Jaimes P Graves JE. Isolation and characterization of seven tetra-nucleotide microsatellite loci from Atlantic northern bluefin tuna Thunnus thynnus thynnus. Mol. Ecol. Notes 2002 2 : 214 216.
23. Carlsson J McDowell JR Díaz-Jaimes P Carlsson JEL Boles SB Gold JR Graves JE. Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea. Mol. Ecol. 2004 13 : 3345 3356.
24. Sambrook J Fritsch EF Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Sprig Harbor, NY. 1989.
25. Laird PW Zijdervel A Linders K Rudnicki MA Jaenisch R Berns A. Simplified mammalian DNA isolation procedure. Nucleic Acids Res. 1991 19 : 4293.
26. Takagi M Okamura T Chow S Taniguchi N. PCR primers for microsatellite loci in tuna species of the genus Thunnus and its application for population genetic study. Fish. Sci. 1999 65 : 571 576.
27. van Oosterhout C Hutchinson WF Wills DPM Shipley P. Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 2004 4 : 535 538.
28. Wattier E Enger CL Saumitou-Laprade P Valero M. Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rodophyta). Mol. Ecol. 1998 7 : 1569 1573.
29. Schneider S Kueffer JM Roessli D Excoffier L. Arlequin Ver. 1.1: a Software for Population Genetic Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland. 1997.
30. Guo SW Thompson EA. Performing the exact test for Hardy-Weinberg proportion for multiple alleles. Biometrics 1992 48 : 361 372.
31. Weir BS Cockerham CC. Estimating F statistics for the analysis of population structure. Evolution 1984 38 : 1358 1370.
32. Goudet J. fstat (vers. 1.2): a computer program to calculate F-statistics. J. Hered. 1995 86 : 485 486.
33. Raymond M Rousset F. genepop (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 1995 86 : 248 249.
34. Rice WR. Analyzing tables of statistical tests. Evolution 1989 43 : 223 225.
35. Cabin JR Mitchell RJ. To Bonferroni or not Bonferroni: when and how are the questions. ESA Bull. 2000 81 : 246 248.
36. Moran DM. Arguments for rejecting the sequential Boferroni in ecological studies. Oikos 2003 100 : 403 405.
37. Perneger TV. What's wrong with the Bonferroni adjustments. BMJ 1998 316 : 1236 1238.
38. Klein AP Kovac I Sorant AJM Baffoe-Bonnie A Doan QB Ibay G Lockwood E Mandal D Santhosh L Weissbecker K Woo J Zambelli-Weiner A Zhang J Naiman DQ Malley J Bailey JEW. Importance sampling method of correction for multiple testing in affected sib-pair linkage analysis. BMC Genet. 2003 4 : S73.
39. Ueyanagi S Mori K Nishikawa Y. Research on distribution of larvae. S. Ser. Far Seas Fish. Res. Lab. 1969 1 : 7 12.
40. Schaefer KM. Reproductive biology of the yellowfin tuna (Thunnus albacares) in the eastern Pacific ocean. Bull. Inter-Am. Trop. Tuna Comm. 1998 21 : 205 272.
41. Wyrtki K. Circulation and water masses in the eastern equatorial Pacific Ocean. Int. J. Oceanol. Limnol. 1967 1 : 117 147.
42. Ely B Viñas J Alvarado-Bremer J Black D Lucas L Covello K Labrie AV Thelen E. Consequences of the historical demography on the global population structure of two highly migratory cosmopolitan marine fishes: the yellowfin tuna (Thunnus albacares) and the skipjack tuna (Katsuwonis pelamis). BMC Evol. Biol. 2005 5 : 19.
43. Waples RS. Separating the wheat from the chaff: patterns of genetic differentiation in high flow species. J. Hered. 1998 89 : 438 450.