Development and utilization of a quantitative polymerase chain reaction assay to evaluate human polyomavirus JC DNA load

Panminerva Medica

Volumn 48, Issue 1, 2006, Pages 59-66

  Cavallo, R ^a   Bergallo, M ^a   Costa, C ^a   Piana, F ^a   Burdino, E ^a   Merlino, C ^a   Negro Ponzi, A ^a  

^a UNIVERSITY OF TURIN   (Italy)

Author keywords

Immunosuppression; Kidney transplantation; Polymerase chain reactions, methods; Polyomavirus JC

Indexed keywords

VIRUS DNA;

ARTICLE; CASE CONTROL STUDY; CEREBROSPINAL FLUID; GENETICS; HUMAN; ISOLATION AND PURIFICATION; JC VIRUS; KIDNEY TRANSPLANTATION; LEUKOENCEPHALOPATHY; METHODOLOGY; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; STANDARD; VALIDATION STUDY; VIROLOGY;

BASE SEQUENCE; CASE-CONTROL STUDIES; DNA, VIRAL; HUMANS; JC VIRUS; KIDNEY TRANSPLANTATION; LEUKOENCEPHALOPATHY, PROGRESSIVE MULTIFOCAL; POLYMERASE CHAIN REACTION;

EID: 33745021423     PISSN: 00310808     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. Shah KV. Human polyomavirus BKV and renal disease. Nephrol Dial Transplant 2000;15:754-5.
2. Sabath BF, Major EO. Traffic of JC virus from sites of initial infection to the brain: the path to progressive multifocal leukoencephalopathy. J Infect Dis 2002;186 Suppl 2:S180-6.
3. Laghi L, Randolph AE, Chauhan DP, Marra G, Major EO, Neel JV et al. JC virus DNA is present in the mucosa of the human colon and colorectal cancers. Proc Natl Acad Sci USA 1999;96:7484-9.
4. Andrews C, Shah KV, Rubin R, Hirsch M. BKV papovavirus infections in renal transplant recipients: contribution of donor kidneys. J Infect Dis 1982;145:276-9.
5. Heritage J, Chesters PM, McCance DJ. The persistence of papovavirus BK DNA sequences in normal human renal tissue. J Med Virol 1981;8:143-5.
6. Chesters PM, Heritage J, McCance DJ. Persistence of DNA sequences of BK virus and JC virus in normal human tissues and in diseased tissues. J Infect Dis 1983;147:676-84.
7. Hogan TF, Borden EC, McBain JA, Padgett BL, Walker DL. Human polyomavirus infections with JC virus and BK virus in renal transplant patients. Ann Intern Med 1980;92:373-8.
8. Gardner SD, Mackenzie EFD, Smith C, Porter AA. Prospective study of the human polyomaviruses BK and JC and cytomegalovirus in renal transplant recipients. J Clin Pathol 1984;37:578-86.
9. Andrews CA, Shah KV, Daniel RW, Hirsch MS, Rubin RH. A serological investigation of BK virus and JC virus infections in recipients of renal allografts. J Infect Dis 1988;158:176-81.
10. Merlino C, Bergallo M, Daniele R, Scutera S, Giacchino F, Comune L et al. Co-detection and discrimination of JCV and BKV DNA by duplex nested-PCR in renal transplant recipients. Panminerva Med 2004;46:153-9.
11. Pappo O, Demetris AJ, Raikow RB, Randhawa PS. Human polyoma virus infection of renal allografts: histopathological diagnosis, clinical significance, and literature review. Mod Pathol 1996;9:105-9.
12. Smith RD, Galla JH, Skahan K, Anderson P, Linnemann CC Jr, Ault GS et al. Tubulointerstitial nephritis due to a mutant polyomavirus BK virus strain, BKV(Cin), causing end-stage renal disease. J Clin Microbiol 1998;36:1660-5.
13. Boubenider S, Hiesse C, Marchand S, Hafi A, Kriaa F, Charpentier B. Post-transplantation polyomavirus infections. J Nephrol 1999;12:24-9.
14. Howell DN, Smith SR, Butterly DW, Klassen PS, Krigman HR, Burchette JL Jr et al. Diagnosis and management of BK polyomavirus interstitial nephritis in renal transplant recipients. Transplantation 1999;68:1279-88.
15. Nickeleit V, Hirsch H, Binet IF, Gudat F, Prince O, Dalquen P et al. Polyoma virus infection of renal allograft recipients. From latent infection to manifest disease. J Am Soc Nephrol 1999;10:1080-9.
16. Randhawa P, Baksh F, Aoki N, Tschirhart D, Finkelstein S. JC virus infection in allograft kidneys. Analysis by polymerase chain reaction and immunochemistry. Transplantation 2001;71:1300-3.
17. Wen MC, Wang CL, Wang M, Cheng CH, Wu MJ, Chen CH et al. Association of JC virus with tubulointerstitial nephritis in a renal allograft recipient. J Med Virol 2004;72:675-8.
18. Shitrit D, Lev N, Bar-Gil-Shitrit A, Kramer MR. Progressive multifocal leukoencephalopathy in transplant recipients. Transpl Int 2005;17:658-65.
19. Eggers C, Stelbrink HJ, Buhk T, Dorries K. Quantification of JC virus DNA in the cerebrospinal fluid of patients with human immunodeficiency virus-associated progressive multifocal leukoencephalopathy-a longitudinal study. J Infect Dis 1999;180:1690-4.
20. Koralnik IJ, Schmitz JE, Lifton MA, Forman MA, Letvin NL. Detection of JC virus DNA in peripheral blood cell subpopulations of HIV-1 infected individuals. Neurovirology 1999;5:430-5.
21. Biel SS, Held TK, Landt O, Niedrig M, Gelderblom HR, Siegert W et al. Rapid quantification and differentation of human polyomavirus DNA in undiluted urine from patients after bone marrow transplantation. J Clin Microbiol 2000;38:3689-95.
22. Drews K, Bashir T, Dorries K. Quantification of human polyomavirus JC in brain tissue and cerebrospinal fluid of patients with progressive multifocal leukoencephalopathy by competitive PCR. J Virol Methods 2000;84:23-36.
23. Fedele CG, Avellon A, Ciardi M, Delia S, Tenorio A. Quantitation of polyomavirus DNA by a competitive nested polymerase chain reaction. J Virol Methods 2000;88:51-61.
24. Leung AY, Suen CK, Lie AK, Liang RH, Yuen KY, Kwong YL. Quantification of polyoma BK viruria in hemorrhagic cystitis complicating bone marrow transplantation. Blood 2001;98:1971-8.
25. Limaye AP, Jerome KR, Kuhr CS, Ferrenberg J, Huang ML, Davis CL et al. Quantitation of BK virus load in serum for the diagnosis of BK virus-associated nephropathy in renal transplant recipients. J Infect Dis 2001;183:1669-72.
26. Andreoletti L, Lescieux A, Lambert V, Si-Mohamed A, Matta M, Wattre P et al. Semiquantitative detection of JCV-DNA in peripheral blood leukocytes from HIV-1-infected patients with or without progressive multifocal leukoencephalopathy. J Med Virol 2002;66:1-7.
27. Bergallo M, Merlino C, Bollero C, Scutera S, Sinesi F, Cavallo R. Human polyomavirus BK (BKV)-DNA detection by nested-PCR in renal transplant recipients. Microbiologica 2002;25:331-4.
28. Garcia de Viedma D, Diaz Infantes M, Miralles P, Berenguer J, Marin M, Munoz L et al. JC virus load in progressive multifocal leukoencephalopathy: analysis of the correlation between the viral burden in cerebrospinal fluid, patient survival, and the volume of neurological lesions. Clin Infect Dis 2002;34:1568-75.
29. Leung AYH, Chan M, Tang SCW, Liang R, Kwong YL. Real-time quantitative analysis of polioma BK viremia and viruria in renal allograft recipients. J Virol Methods 2002;103:51-6.
30. Merlino, C. Bergallo M, Gribaudo G, Gregori G, Segoloni PG, Giacchino F et al. Polyomavirus BK DNA quantification in renal transplant recipients. J Clin Virol 2003;28:265-74.
31. Merlino C, Bergallo M, Giacchino F, Danele R, Bollero C, Comune L et al. Human Polyomavirus BK monitoring by quantitative PCR in renal transplant recipients. Intervirology 2004;47:41-7.
32. Ferrante P, Caldarelli-Stefano R, Omodeo-Zorini E, Vago L, Boldorini R, Costanzo G. PCR detection of JC virus DNA in brain tissue from patients with and without progressive multifocal leukoencephalopathy. J Med Virol 1995;47:19-25.
33. Gibson UE, Heid CA, Williams PM. A novel method for real time quantitative RT-PCR. Genome Res 1996;6:995-1001.
34. Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res 1996;6:986-94.
35. Storch GA. Diagnostic Virology. In: Knipe DM, Howley PM editors. Fields-Virology. Philadelphia: Lippincott Williams & Wilkins; 2001. Vol.1, p. 493-531.
36. Fox JC, Griffiths PD, Emery VC. Quantification of human cytomegalovirus DNA using the polymerase chain reaction. J Gen Virol 1992;73:2405-8.
37. Diviacco S, Norio P, Zentilin L, Menzo S, Clementi M, Biamonti G et al. A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates. Gene 1992;122:313-20.
38. Menzo S, Bagnarelli P, Giacca M, Manzin A, Varaldo PE, Clementi M. Absolute quantitation of viremia in human immunodeficiency virus infection by competitive reverse transcription and polymerase chain reaction. J Clin Microbiol 1992;30:1752-7.
39. Randhawa P, Shapiro R, Vats A. Quantitation of DNA of polyomaviruses BK and JC in human kidneys. J Infect Dis 2005;192:504-9.