-
1
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels, C., T.-H. Xia, M. Billeter, P. Güntert, and K. Wüthrich. 1995. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6:1-10.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.-H.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
3
-
-
23644435321
-
Bacteriophage P1 hot gene product can substitute for the E. coli DNA polymerase III θ subunit
-
Chikova, A. K., and R. M. Schaaper. 2005. Bacteriophage P1 hot gene product can substitute for the E. coli DNA polymerase III θ subunit. J. Bacteriol. 187:5528-5536.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 5528-5536
-
-
Chikova, A.K.1
Schaaper, R.M.2
-
4
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu, G., F. Delaglio, and A. Bax. 1999. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13:289-302.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
5
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, and A. Bax. 1995. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6:277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
6
-
-
0037426325
-
Elucidation of the ε-θ interface of Escherichia coli DNA polymerase III by NMR spectroscopy
-
DeRose, E. F., T. Darden, S. Harvey, S., Gabel, F. W. Perrino, R. M. Schaaper, and R. E. London. 2003. Elucidation of the ε-θ interface of Escherichia coli DNA polymerase III by NMR spectroscopy. Biochemistry 42:3635-3644.
-
(2003)
Biochemistry
, vol.42
, pp. 3635-3644
-
-
DeRose, E.F.1
Darden, T.2
Harvey, S.3
Gabel, S.4
Perrino, F.W.5
Schaaper, R.M.6
London, R.E.7
-
7
-
-
9944257036
-
Phage like it HOT: Solution structure of the bacteriophage P1-encoded HOT protein, a homolog of the θ subunit of E. coli DNA polymerase III
-
DeRose, E. F., T. W. Kirby, G. A. Mueller, A. K. Chikova, R. M. Schaaper, and R. E. London. 2004. Phage like it HOT: solution structure of the bacteriophage P1-encoded HOT protein, a homolog of the θ subunit of E. coli DNA polymerase III. Structure 12:2221-2231.
-
(2004)
Structure
, vol.12
, pp. 2221-2231
-
-
DeRose, E.F.1
Kirby, T.W.2
Mueller, G.A.3
Chikova, A.K.4
Schaaper, R.M.5
London, R.E.6
-
8
-
-
0037039423
-
Model for the catalytic domain of the proofreading ε subunit of Escherichia coli DNA polymerase III based on NMR structural data
-
DeRose, E. F., D. W. Li, T. Darden, S. Harvey, F. W. Perrino, R. M. Schaaper, and R. E. London. 2002. Model for the catalytic domain of the proofreading ε subunit of Escherichia coli DNA polymerase III based on NMR structural data. Biochemistry 41:94-110.
-
(2002)
Biochemistry
, vol.41
, pp. 94-110
-
-
DeRose, E.F.1
Li, D.W.2
Darden, T.3
Harvey, S.4
Perrino, F.W.5
Schaaper, R.M.6
London, R.E.7
-
9
-
-
0029929070
-
The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA
-
Doherty, A. J., L. C. Serpell, and C. P. Ponting. 1996. The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Res. 24:2488-2497.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
10
-
-
0034891022
-
Mapping the ligand binding site at protein side-chains in protein-ligand complexes through NOE difference spectroscopy
-
Eichmüller, C., M. Tollinger, B. Kräutler, and R. Konrat. 2001. Mapping the ligand binding site at protein side-chains in protein-ligand complexes through NOE difference spectroscopy. J. Biomol. NMR 20:195-202.
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 195-202
-
-
Eichmüller, C.1
Tollinger, M.2
Kräutler, B.3
Konrat, R.4
-
11
-
-
58149362646
-
Sequential protein backbone resonance assignments using an improved 3D-HN(CA)CO pulse scheme
-
Engelke, J., and H. Rüterjans. 1995. Sequential protein backbone resonance assignments using an improved 3D-HN(CA)CO pulse scheme. J. Magn. Reson. B 109:318-322.
-
(1995)
J. Magn. Reson. B
, vol.109
, pp. 318-322
-
-
Engelke, J.1
Rüterjans, H.2
-
12
-
-
0004757060
-
-
University of California, San Francisco
-
Goddard, T. D., and D. G. Kneller. 2003. Sparky, University of California, San Francisco.
-
(2003)
Sparky
-
-
Goddard, T.D.1
Kneller, D.G.2
-
14
-
-
9444245493
-
Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR
-
Grzesiek, S., and A. Bax. 1992. Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR. J. Am. Chcm. Soc. 114:6291-6293.
-
(1992)
J. Am. Chcm. Soc.
, vol.114
, pp. 6291-6293
-
-
Grzesiek, S.1
Bax, A.2
-
16
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Güntert, P., C. Mumenthaler, and K. Wüthrich. 1997. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273:283-298.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
17
-
-
7244239509
-
Application of electrospray ionization mass spectrometry to study the hydrophohic interaction between then ε and θ subunits of DNA polymerase III
-
Gupta, R., S. M. Hamdan, N. E. Dixon, M. M. Sheil, and J. L. Beck. 2004. Application of electrospray ionization mass spectrometry to study the hydrophohic interaction between then ε and θ subunits of DNA polymerase III. Protein Sci. 13:2878-2887.
-
(2004)
Protein Sci.
, vol.13
, pp. 2878-2887
-
-
Gupta, R.1
Hamdan, S.M.2
Dixon, N.E.3
Sheil, M.M.4
Beck, J.L.5
-
18
-
-
0033792973
-
Preliminary X-ray crystallographic and NMR studies on the exonuclease domain of the ε subunit of Escherichia coli DNA polymerase III
-
Hamdan, S., S. E. Brown, P. R. Thompson, J. Y. Yang, P. D. Carr, D. L. Ollis, G. Otting, and N. E. Dixon. 2000. Preliminary X-ray crystallographic and NMR studies on the exonuclease domain of the ε subunit of Escherichia coli DNA polymerase III. J. Struct. Biol. 131:164-169.
-
(2000)
J. Struct. Biol.
, vol.131
, pp. 164-169
-
-
Hamdan, S.1
Brown, S.E.2
Thompson, P.R.3
Yang, J.Y.4
Carr, P.D.5
Ollis, D.L.6
Otting, G.7
Dixon, N.E.8
-
19
-
-
0037161144
-
Hydrolysis of the 5′-p-nitrophenyl ester of TMP by the proofreading exonuclease (ε) subunit of Escherichia coli DNA polymerase III
-
Hamdan, S., E. M. Bulloch, P. R. Thompson, J. L. Beck, J.-Y. Yang, J. A. Crowther, P. E. Lilley, P. D. Carr, D. L. Ollis, S. E. Brown, and N. E. Dixon. 2002. Hydrolysis of the 5′-p-nitrophenyl ester of TMP by the proofreading exonuclease (ε) subunit of Escherichia coli DNA polymerase III. Biochemistry 41:5266-5275.
-
(2002)
Biochemistry
, vol.41
, pp. 5266-5275
-
-
Hamdan, S.1
Bulloch, E.M.2
Thompson, P.R.3
Beck, J.L.4
Yang, J.-Y.5
Crowther, J.A.6
Lilley, P.E.7
Carr, P.D.8
Ollis, D.L.9
Brown, S.E.10
Dixon, N.E.11
-
20
-
-
0036229246
-
Structural basis for proofreading during replication of the Escherichia coli chromosome
-
Hamdan, S., P. D. Carr, S. E. Brown, D. L. Ollis, and N. E. Dixon. 2002. Structural basis for proofreading during replication of the Escherichia coli chromosome. Structure 10:535-546.
-
(2002)
Structure
, vol.10
, pp. 535-546
-
-
Hamdan, S.1
Carr, P.D.2
Brown, S.E.3
Ollis, D.L.4
Dixon, N.E.5
-
21
-
-
0025995844
-
A structure taxonomy of DNA-binding domains
-
Harrison, S. C. 1991. A structure taxonomy of DNA-binding domains. Nature 353:715-719.
-
(1991)
Nature
, vol.353
, pp. 715-719
-
-
Harrison, S.C.1
-
22
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
Herrmann, T., P. Güntert, and K. Wüthrich. 2002. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319:209-227.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
23
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and C. Sander. 1993. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
24
-
-
0020997912
-
Dictionary of protein secondary structure-pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structure-pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
26
-
-
0034056323
-
NMR solution structure of the θ subunit of DNA polymerase III from Escherichia coli
-
Keniry, M. A., H. A. Berthon, J. Y. Yang, C. S. Miles, and N. E. Dixon. 2000. NMR solution structure of the θ subunit of DNA polymerase III from Escherichia coli. Protein Sci. 9:721-733.
-
(2000)
Protein Sci.
, vol.9
, pp. 721-733
-
-
Keniry, M.A.1
Berthon, H.A.2
Yang, J.Y.3
Miles, C.S.4
Dixon, N.E.5
-
27
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., M. Billeter, and K. Wüthrich. 1996. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graphics. 14:51-55.
-
(1996)
J. Mol. Graphics.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
28
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R. A., J. A. C. Rullmann, M. W. MacArthur, R. Kaptein, and J. M. Thornton. 1996. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8:477-486.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.C.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
29
-
-
6044247519
-
The genome of bacteriophage P1
-
Lobocka, M. B., D. Rose, M. Rusin, A. Samojedny, H. Lehnherr, M. B. Yarmolinsky, and F. R. Blattner. 2004. The genome of bacteriophage P1. J. Bacteriol. 186:7032-7068.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7032-7068
-
-
Lobocka, M.B.1
Rose, D.2
Rusin, M.3
Samojedny, A.4
Lehnherr, H.5
Yarmolinsky, M.B.6
Blattner, F.R.7
-
30
-
-
0003187567
-
The atomic structures of protein-protein recognition sites
-
Lo Conte, L., C. Chothia, and J. Janin. 1999. The atomic structures of protein-protein recognition sites. J. Mol. Biol. 285:2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
31
-
-
0033647653
-
An overview of the structures of protein-DNA complexes
-
Luscombe, N. M., S. E. Austin, H. M. Berman, and J. M. Thornton. 2000. An overview of the structures of protein-DNA complexes. Genome Biol. 1:1-37.
-
(2000)
Genome Biol.
, vol.1
, pp. 1-37
-
-
Luscombe, N.M.1
Austin, S.E.2
Berman, H.M.3
Thornton, J.M.4
-
32
-
-
0034635344
-
Backbone dynamics and refined solution structure of the N-terminal domain of DNA polymerase. Correlation with DNA binding and dRP lyase activity
-
Maciejewski, M. W., D. Liu, R. Prasad, S. H. Wilson, and G. P. Mullen. 2000. Backbone dynamics and refined solution structure of the N-terminal domain of DNA polymerase. Correlation with DNA binding and dRP lyase activity. J. Mol. Biol. 296:229-253.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 229-253
-
-
Maciejewski, M.W.1
Liu, D.2
Prasad, R.3
Wilson, S.H.4
Mullen, G.P.5
-
33
-
-
0022344806
-
The polymerase subunit of DNA polymerase III of Escherichia coli. I. Amplification of the dnaE gene product and polymerase activity of the α subunit
-
Maki, H., T. Horiuchi, and A. Kornberg. 1985. The polymerase subunit of DNA polymerase III of Escherichia coli. I. Amplification of the dnaE gene product and polymerase activity of the α subunit. J. Biol. Chem. 260:12982-12986.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 12982-12986
-
-
Maki, H.1
Horiuchi, T.2
Kornberg, A.3
-
34
-
-
0022345854
-
The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the α subunit, devoid of nuclcase activities
-
Maki, H., and A. Kornberg. 1985. The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the α subunit, devoid of nuclcase activities. J. Biol. Chem. 260:12987-12992.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 12987-12992
-
-
Maki, H.1
Kornberg, A.2
-
35
-
-
0023369230
-
Proofreading by DNA polymerase III of Escherichia coli depends on cooperative interaction of the polymerase and exonuclease subunits
-
Maki, H., and A. Kornberg. 1987. Proofreading by DNA polymerase III of Escherichia coli depends on cooperative interaction of the polymerase and exonuclease subunits. Proc. Natl. Acad. Sci. USA 84:4389-4392.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4389-4392
-
-
Maki, H.1
Kornberg, A.2
-
37
-
-
0141677891
-
Chromosomal replicases as asymmetric dimers: Studies of subunit arrangement and functional consequences
-
McHenry, C. S. 2003. Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences. Mol. Microbiol. 49:1157-1165.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 1157-1165
-
-
McHenry, C.S.1
-
38
-
-
0018786252
-
DNA polymerase III of Escherichia coli. Purification and identification of subunits
-
McHenry, C. S., and W. Crow. 1979. DNA polymerase III of Escherichia coli. Purification and identification of subunits. J. Biol. Chem. 254:1748-1753.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 1748-1753
-
-
McHenry, C.S.1
Crow, W.2
-
39
-
-
26444476481
-
Nuclear magnetic resonance solution structure of the Escherichia coli DNA polymerase III θ subunit
-
Mueller, G. A., T. W. Kirby, E. F. DeRose, D. Li, R. M. Schaaper, and R. E. London. 2005. Nuclear magnetic resonance solution structure of the Escherichia coli DNA polymerase III θ subunit. J. Bacteriol. 187:7081-7089.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7081-7089
-
-
Mueller, G.A.1
Kirby, T.W.2
DeRose, E.F.3
Li, D.4
Schaaper, R.M.5
London, R.E.6
-
41
-
-
0001689741
-
Gradient-enhanced triple-resonance three-dimensional NMR experiments with improved sensitivity
-
Muhandiram, D. R., and L. E. Kay. 1994. Gradient-enhanced triple-resonance three-dimensional NMR experiments with improved sensitivity. J. Magn. Reson. B 103:203-216.
-
(1994)
J. Magn. Reson. B
, vol.103
, pp. 203-216
-
-
Muhandiram, D.R.1
Kay, L.E.2
-
43
-
-
0025252231
-
1H]-NMR spectroscopy: Combined use with isotope labeling for studies of macromolecular conformation and intermolecular interactions
-
1H]-NMR spectroscopy: combined use with isotope labeling for studies of macromolecular conformation and intermolecular interactions. Q. Rev. Biophys. 23:39-96.
-
(1990)
Q. Rev. Biophys.
, vol.23
, pp. 39-96
-
-
Otting, G.1
Wüthrich, K.2
-
44
-
-
0033619538
-
Two functional domains of the ε subunit of DNA polymerase III
-
Perrino, F. W., S. Harvey, and S. M. McNeill. 1999. Two functional domains of the ε subunit of DNA polymerase III. Biochemistry 38:16001-16009.
-
(1999)
Biochemistry
, vol.38
, pp. 16001-16009
-
-
Perrino, F.W.1
Harvey, S.2
McNeill, S.M.3
-
46
-
-
33645390370
-
Lanthanide labeling offers fast NMR approach to 3D structure determinations of protein-protein complexes
-
Pintacuda, G., A. Y. Park, M. A. Keniry, N. E. Dixon, and G. Otting. 2006. Lanthanide labeling offers fast NMR approach to 3D structure determinations of protein-protein complexes. J. Am. Chem. Soc. 128:3696-3702.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 3696-3702
-
-
Pintacuda, G.1
Park, A.Y.2
Keniry, M.A.3
Dixon, N.E.4
Otting, G.5
-
47
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of α helices
-
Richardson, J. S., and D. C. Richardson. 1988. Amino acid preferences for specific locations at the ends of α helices. Science 240:1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
48
-
-
0020981110
-
Identification of the ε-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: A fidelity subunit for DNA replication
-
Scheuermann, R. H., S. Tam, P. M. J. Burgers, and H. Echols. 1983. Identification of the ε-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: a fidelity subunit for DNA replication. Proc. Natl. Acad. Sci. USA 80:7085-7089.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 7085-7089
-
-
Scheuermann, R.H.1
Tam, S.2
Burgers, P.M.J.3
Echols, H.4
-
49
-
-
0013293280
-
The Xplor-NIH NMR molecular structure determination package
-
Schwieters, C. D., N. Tjandra, J. Kuszewski, and G. M. Clore. 2003. The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160:65-73.
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Tjandra, N.2
Kuszewski, J.3
Clore, G.M.4
-
50
-
-
0025122284
-
Processive replication is contingent on the exonuclease subunil of DNA polymerase III holoenzyme
-
Studwell, P. S., and M. O'Donnell. 1990. Processive replication is contingent on the exonuclease subunil of DNA polymerase III holoenzyme. J. Biol. Chem. 265:1171-1178.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 1171-1178
-
-
Studwell, P.S.1
O'Donnell, M.2
-
51
-
-
0027158172
-
DNA polymerase III accessory proteins. V. θ encoded by holE
-
Studwell-Vaughan, P. S., and M. O'Donnell. 1993. DNA polymerase III accessory proteins. V. θ encoded by holE J. Biol. Chem. 268:11785-11791.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 11785-11791
-
-
Studwell-Vaughan, P.S.1
O'Donnell, M.2
-
52
-
-
1942539340
-
The θ subunit of Escherichia coli DNA polymerase III: A role in stabilizing the ε proofreading subunit
-
Taft-Benz, S. A., and R. M. Schaaper. 2004. The θ subunit of Escherichia coli DNA polymerase III: a role in stabilizing the ε proofreading subunit. J. Bacteriol. 186:2774-2780.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2774-2780
-
-
Taft-Benz, S.A.1
Schaaper, R.M.2
-
54
-
-
0028673594
-
Chemical shifts as a tool for structure determination
-
Wishart, D. S., and B. D. Sykes. 1994. Chemical shifts as a tool for structure determination. Methods Enzymol. 239:363-392.
-
(1994)
Methods Enzymol.
, vol.239
, pp. 363-392
-
-
Wishart, D.S.1
Sykes, B.D.2
-
56
-
-
0028541866
-
15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques
-
15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques. J. Biomol. NMR 4:845-858.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 845-858
-
-
Zhang, O.1
Kay, L.E.2
Olivier, J.P.3
Forman-Kay, J.D.4
|