Bubble dynamics in double-stranded DNA

Physical Review Letters

Volumn 90, Issue 13, 2003, Pages

  Altan Bonnet, Grégoire ^a   Libchaber, Albert ^a   Krichevsky, Oleg ^a,b  

^a ROCKEFELLER UNIVERSITY   (United States)

^b BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BOUNDARY CONDITIONS; BUBBLE FORMATION; CORRELATION METHODS; DNA; ERROR ANALYSIS; FLUORESCENCE; KINETIC THEORY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE; SPECTROSCOPY;

AUTOCORRELATION FUNCTION; FLUORESCENCE CORRELATION SPECTROSCOPY; RELAXATION DYNAMICS; RELAXATION KINETICS;

MOLECULAR BIOLOGY;

EID: 33744959916     PISSN: 00319007     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (19)

1. I. SantaLucia, Jr., Proc. Natl. Acad. Sci. U.S.A. 95, 1460 (1998).
2. M. Peyrard, Europhys. Lett. 44, 271 (1998).
3. A. Campa, Phys. Rev. E 63, 21901 (2001).
4. T. Dauxois, M. Peyrard, and A. R. Bishop, Phys. Rev. E 47, R44 (1993).
5. R. M. Fye and C. J. Benham, Phys. Rev. E 59, 3408 (1999).
6. A. Kornberg and T. A. Baker, DNA Replication (W. H. Freeman, New York, 1992).
7. Y. Kafri, D. Mukamel, and L. Peliti, Phys. Rev. Lett. 85, 4988 (2000).
8. J. F. Léger et al., Proc. Natl. Acad. Sci. U.S.A. 95, 12295 (1998).
9. M. Guéron and J. L. Leroy, Methods Enzymol. 261, 383 (1995).
10. S. Tyagi and F. R. Kramer, Nat. Biotechnol. 14, 303 (1996).
11. D. Magde, E. Elson, and W. W. Webb, Phys. Rev. Lett. 29, 705 (1972).
12. R. Rigler et al., Eur. Biophys. J. 22, 169 (1993).
13. G. Bonnet, O. Krichevsky, and A. Libchaber, Proc. Natl. Acad. Sci. U.S.A. 95, 8602 (1998).
14. J. Telser, K. A. Cruickshank, L. E. Morrison, and T. L. Netzel, J. Am. Chem. Soc. 111, 6966 (1989).
15. B. R. Amirikyan, A. V. Vologodskii, and Y. Lyubchenko, Nucleic Acids Res. 9, 5469 (1981).
16. C. J. Benham, J. Mol. Biol. 225, 835 (1992).
17. See EPAPS Document No. E-PRLTAO-90-028310 for full analytical derivation of formula (3). A direct link to this document may be found in the online article's HTML reference section. The document may also be reached via the EPAPS homepage (http://www.aip.org/pubservs/epaps.html) or from ftp.aip.org. in the directory /epaps/. See the EPAPS homepage for more information.
18. Z. Farkas and T. Fülöp, J. Phys. A 34, 3191 (2001).
19. V. A. Bloomfield, D. M. Crothers, and I. Tinoco, Nucleic Acids: Structures, Properties, and Functions (University Science Books, Sausalito, CA, 2000).