Application of the cDNA macroarray technology aimed to detect gene expression changes following burn injury

Biotecnologia Aplicada

Volumn 22, Issue 1, 2005, Pages 28-33

  Guillén, Isabel A ^a   Freire, Freya ^a   Cibrian, Danay ^a   Berlanga Acosta, Jorge ^a  

^a CENTER FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Cuba)

Author keywords

Burn; DNA macroarrays; RT PCR; Scalded mice

Indexed keywords

EID: 33744811309     PISSN: 08644551     EISSN: 10272852     Source Type: Journal    
DOI: None     Document Type: Article

References (33)

1. Jeschke MG, Low JFA, Spies M, Vita R, Hawkins HK, Herndon DN, Barrow RE. Cell proliferation, apoptosis, NF-B expression, enzyme, protein, and weight changes in livers of burned rats. Am J Physiol Gastrointest Liver Physiol 280: G1314-G1320, 2001.
2. Sener G, Ozer Sehirli A, Stairoglu A, Keyer-Uysal M, Yegen B. Melatonin improves oxidative organ damage in a rat model of thermal injury 2002;28:419-25.
3. Schwacha MG. Macrophages and post-burn immune dysfunction. Burns 2003;29:1-14.
4. Tsou R, Wallace K, Gibran N, Isik F. Comparison of normal human skin gene expression using cDNA microarrays. Wound Rep Reg 2001;9:77-85.
5. Gibran NS, Heimbach DM. Current status of burn wound pathophysiology. Clin Plast Surg. 2000;27(1):11-22.
6. Shalon D, Smith SJ, Brown PO. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 1996;6:639-45.
7. Cole J, Tsou R, Wallace K, Gibran N, Isik F. Comparison of normal human skin gene expression using cDNA microarrays. Wound Rep Reg 2001;9:77-85.
8. Spies M, Dasu MRK, Svrakic N, Nesic O, Barrow RE, Perez-Polo JR, and Herndon DN. Gene expression analysis in burn wounds of rats. Am J Physiol Regul Integr Comp Physiol 2002;283:918-30.
9. Guillén I, Torres E, Fernández JR. Technology, analysis and applications of the bio-arrays. Apply Biotechnology 2003;20(2):77-81.
10. Walker HL and Mason AD. A standard animal burn. J Trauma 1968;8:1049-51.
11. Simon R, Radmacher MD and Dobbin K. Design studies using DNA microarrays. Genetic Epidemiology 2001;23:21-36.
12. Schummer M, Ng WI, Nelson PS, Bumgarner RE and Hood L. Inexpensive handheld device for the construction of high-density nucleic acid Arrays. Biotechniques 1997;23:1087-92.
13. Kepler TB, Crosby L, Morgan KT. Normalization and analysis of cDNA microarray data by self-consistency and local regression. Genome Biology 2002;3(7):1-12.
14. Sambrook J, Russell D. Molecular cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (2001).
15. Pahl PMB, Hodges YK, Meltesen L, Perryman MB, Horwitz KB, Horwitz LD. ZNF207, a ubiquitously expressed zinc finger gene on chromosome 6p21.3 Genomics 1998;53:410-12.
16. Borden KLB. RING fingers and B-boxes: zinc-binding protein-protein interaction domains. Biochem Cell Biol 1998;76:351-58.
17. Duncan R, Collins I, Tomonaga T, Zhang T, Levens D. A unique transactivation sequence motif is found in the carboxyl-terminal domain of the single-strand-binding protein FBP. Mol Cell Biol 1996;16(5):2274-82.
18. Kondo H, Yonezawa Y, Ito H. Interferon-beta, an autocrine cytokine, suppresses human fetal skin fibroblast migration into a denuded area in a cell monolayer but is not involved in the age-related decline of cell migration. Mech Ageing Dev 1996;87(3):141-53.
19. Duguay D, Foty RA, Steinberg MS. Cadherin-mediated cell adhesion and tissue segregation: qualitative and quantitative determinants. Dev Biol 2003;253(2):309-23.
20. Carninci P, Hayashizaki Y. High-efficiency full-length cDNA cloning. Meth Enzymol 1999;303:19-44.
21. Nees M, Woodworth CD. Microarrays: spotlight on gene function and pharmacogenomics. Curr Cancer Drug Targets 2001;1(2):155-75.
22. Feezor RJ, Paddock HN, Baker HV, Varela JC, Barreda J, Moldawe LL, Schultz GS, Mozingo DW. Temporal patterns of gene expression in murine cutaneous burn wound healing .Physiol Genomics 2004;16:341-8.
23. Vemula M, Berthiaume F, Jayaraman A, Yarmush ML. Expression profiling analysis of the metabolic and inflammatory changes following burn injury in rats. Physiol Genomics 2004;18:87-98.
24. Fang WH, Yao YM, Shi ZG, Yu Y, Wu Y, Lu LR, Sheng ZY. The mRNA expression patterns of tumor necrosis factor-alpha and TNFR-I in some vital organs after thermal injury. World J Gastroenterol 2003;9(5):1038-44
25. De Risi JL, Iyer VR, Brown PO. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997;278:680-86.
26. Schmittgen TD, Zakrajsek BA. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods 2000;46(1-2):69-81.
27. Fusheng Shi, Liu Xusheng, Di Guiping, Yang Zhengguo, Luo Xiangdong, Yang Zongcheng. An experimental study of the role of cellular apoptosis and its mechanism in pulmonary injury in scalded rats. Annals of Burns and Fire Disasters-vol. XV(1), 2002.
28. Meagher MJ, Braun RE. Requirement for the murine zinc finger protein ZFR in perigastrulation growth and survival. Mol Cell Biol 2001;21(8):2880-90.
29. Brockstedt E, Rickers A, Kostka S, Laubersheimer A, Dorken B, Wittmann-Liebold B, Bommert K, Otto A. Identification of apoptosis-associated proteins in a human Burkitt lymphoma cell line. Cleavage of heterogeneous nuclear ribonucleoprotein A1 by caspase 3. J Biol Chem 1998;273(50):33884.
30. Han ES and Hilsenveck SG. Array-based gene expression profiling to study aging. Mech Ageing Dev 2001; 122:999-1018.
31. Toliver-Kinsky TE, Varma TK, Lin CY, Herndon DN, Sherwood ER. Interferon-gamma production is suppressed in thermally injured mice: decreased production of regulatory cytokines and corresponding receptors. Shock 2002;18(4):322-30.
32. Pilling D, Akbar AN, Girdlestone J, Orteu CH, Borthwick NJ, Amft N, Scheel-Toellner D, Buckley CD, Salmon M. Interferon-β mediates stromal cell rescue of T cells from apoptosis. Eur J Immunol 1999;29:1041-50.
33. Conacci-Sorrel M, Zhurinsky J, Ben-Ze'ev A. The cadherin-catenin adhesion system in signaling and cancer. J Clin Invest 2002;109(8):987-91.