Detection of representatives of the Planctomycetes in Sphagnum peat bogs by molecular and cultivation approaches

Microbiology

Volumn 75, Issue 3, 2006, Pages 329-335

  Kulichevskaya, I S ^a   Pankratov, T A ^a   Dedysh, S N ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

Author keywords

Fluorescence in situ hybridization; Gemmata; Planctomyces; Sphagnum peat bogs; The phylum Planctomycetes

Indexed keywords

BACTERIA (MICROORGANISMS); GEMMATA; GEMMATA OBSCURIGLOBUS; PLANCTOMYCES; PLANCTOMYCES LIMNOPHILUS; PLANCTOMYCETES; SPHAGNUM;

EID: 33744749885     PISSN: 00262617     EISSN: None     Source Type: Journal    
DOI: 10.1134/S0026261706030155     Document Type: Article

References (26)

1. Fuerst, J.A., The Planctomycetes - Emerging Models for Microbial Ecology, Evolution and Cell Biology, Microbiology (UK), 1995, vol. 141, pp. 1493-1506.
2. Fuerst, J.A., Planctomycetes - a Phylum of Emerging Interest for Microbial Evolution and Ecology, WFCC Newsletter, 2004, vol. 38, pp. 1-11.
3. König, H., Schlesner, H., and Hirsch, P., Cell Wall Studies on Budding Bacteria of the Planctomyces/Pasteuria Group and on Prosthecomicrobium sp., Arch. Microbiol., 1984, vol. 138, pp. 200-205.
4. Lindsay, M.R., Webb, R.I., Strous, M., Jetten, M.S., Butler, M.K., Forde, R.J., and Fuerst, J.A., Cell Compartmentalization in Planctomycetes: Novel Types of Structural Organization for the Bacterial Cell, Arch. Microbiol., 2001, vol. 175, pp. 413-429.
5. Fuerst, J.A., and Webb, R.I., Membrane-Bounded Nucleoid in the Eubacterium Gemmata obscuriglobus, Proc. Natl. Acad. Sci. USA., 1991, vol. 88, pp. 8184-8188.
6. Glöckner, F.O., Kube, M., Bauer, M., Teeling, H., Lombardot, T., Ludwig, W., Gade, D., Beck, A., Borzym, K., Heitmann, K., Rabus, R., Schlesner, H., Amann, R., and Reinhardt, R., Complete Genome Sequence of the Marine Planctomycete Pirellula sp. strain 1, Proc. Natl. Acad. Sci. USA, 2003, vol. 100, pp. 8298-8303.
7. Gimesi, N., Planctomyces bekefii Gim. nov. gen. et sp., Hydrobiologiai Tanulmányok, 1924, Budapest: Kiadja a Magyar Ciszterci Rend, pp. 1-8.
8. Krasil'nikov, N.A., Opredelitel' bakterii i aktinomitsetov (Manual for Identification of Bacteria and Actinomycetes), Moscow-Leningrad: Akad. Nauk SSSR, 1949.
9. Staley, J.T., Budding Bacteria of the Pasteuria-Blastobacter Group, Can. J. Microbiol., 1973, vol. 19, pp. 609-614.
10. Schlesner, H., The Development of Media Suitable for the Microorganisms Morphologically Resembling Planctomyces spp., Pirellula spp., and Other Planctomycetales from Various Aquatic Habitats Using Dilute Media, Syst. Appl. Microbiol., 1994, vol. 17, pp. 135-145.
11. Jetten, M.S.M., Cirpus, I., Kartal, B., van Niftrik, L., van de Pas-Schoonen, K.T., Sliekers, O., Haaijer, S., van der Star, W., Schmid, M., van de Vossenberg, J., Schmidt, I., Harhangi, H., van Loosdrecht, M., Kuene, J.G., Op den Camp, H., and Strous, M., 1994-2004: 10 Years of Research on the Anaerobic Oxidation of Ammonium, Biochem. Soc. Trans., 2005, vol. 33, pp. 119-123.
12. Liesack, W. and Stackebrandt, E., Occurrence of Novel Groups of the Domain Bacteria as Revealed by Analysis of Genetic Material Isolated from an Australian Terrestrial Environment, J. Bacteriol., 1992, vol. 174, pp. 5072-5078.
13. Zarda, B., Hahn, D., Chatzinotas, A., Schonhuber, W., Neef, A., Amann, R.I., and Zeyer, J., Analysis of Bacterial Community Structure in Bulk Soil by In Situ Hybridization, Arch. Microbiol., 1997, vol. 168, pp. 185-192.
14. Kuypers, M.M.M., Sliekers, A.O., Lavik, G., Schmid, M., Jørgensen, B.B., Kuenen, J.G., Damste, J.S.S., Strous, M., and Jetten, M.S.M., Anaerobic Ammonium Oxidation by Anammox Bacteria in the Black Sea, Nature, 2003, vol. 422, pp. 608-611.
15. Strous, M., Fuerst, J.A., Kramer, E.H., Logemann, S., Muyzer, G., van de Pas-Schoonen, K.T., Webb, R., Kuenen, J.C., and Jetten, M.S., Missing Lithotroph Identified as New Planctomycete, Nature, 1999, vol. 400, pp. 446-449.
16. Dedysh, S.N., Pankratov, T.A., Belova, S.E., Kulichevskaja, I.S., and Liesack, W., Phylogenetic Analysis and In Situ Identification of Bacterial Community Composition in an Acidic Sphagnum Peat Bog, Appl. Environ. Microbiol., 2005, vol. 72, pp. 2110-2117.
17. Pankratov, T.A., Belova, S.E., and Dedysh, S.N., Evaluation of the Phylogenetic Diversity of Prokaryotic Microorganisms in Sphagnum Peat Bogs by Means of Fluorescence In Situ Hybridization (FISH), Mikrobiologiya, 2005, vol. 74, no. 6, pp. 831-837
18. [Microbiology [Engl. Transl.), vol. 74, no. 6, pp. 722-728].
19. Daims, H., Brühl, A., Amann, R., Schleifer, K.-H., and Wagner, M., The Domain-Specific Probe EUB338 is Insufficient for the Detection of all Bacteria: Development and Evaluation of a More Comprehensive Probe Set, Syst. Appl. Microbiol., 1999, vol. 22, pp. 434-444.
20. Neef, A., Amann, R., Schlesner, H., and Schleifer, K.-H., Monitoring a Widespread Bacterial Group: In Situ Detection of Planctomycetes with 16S rRNA-Targeted Probes, Microbiology (UK), 1998, vol. 144, pp. 3257-3266.
21. Hirsch, P., and Müller, M., Methods and Sources for the Enrichment and Isolation of Budding, Nonprosthecate Bacteria from Freshwater, Microb. Ecol., 1986, vol. 12, pp. 331-341.
22. Staley, J.T., Fuerst, J.A., Giovannoni, S., and Schlesner, H., The Order Planctomycetales and the Genera Planctomyces, Pirellula, Gemmata and Isosphaera, The Prokaryotes: A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, Balows, A., Trüper, H., Dworkin, M., Harder, W., and Schleifer, K.-H., Eds., New York: Springer-Verlag, 1992, pp. 3710-3731.
23. Dedysh, S.N., Panikov, N.S., and Tiedje, J.M., Acidophilic Methanotrophic Communities from Sphagnum Peat Bogs, Appl. Environ. Microbiol., 1998, vol. 64, no. 3, pp. 922-929.
24. Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J., 16S Ribosomal DNA Amplification for Phylogenetic Study, J. Bacteriol., 1991, vol. 173, pp. 697-703.
25. Franzmann, P.D., and Skerman, V.D., Gemmata obscuriglobus, a New Genus and Species of the Budding Bacteria, Antonie van Leeuwenhoek, 1984, vol. 50, pp. 261-268.
26. Hirsch, P., and Müller, M., Planctomyces limnophilus sp. nov., a Stalked and Budding Bacterium from Freshwater, Syst. Appl. Microbiol., 1985, vol. 6, pp. 276-280.