Molecular phylogenetic analyses of snakeheads (Perciformes: Channidae) using mitochondrial DNA sequences

Ichthyological Research

Volumn 53, Issue 2, 2006, Pages 148-159

  Li, Xia ^a   Musikasinthorn, Prachya ^b   Kumazawa, Yoshinori ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b KASETSART UNIVERSITY   (Thailand)

Author keywords

Channidae; Divergence time; Gene organization; Molecular phylogeny; Snakeheads

Indexed keywords

CHANNA ORIENTALIS; CHANNIDAE; NANDIDAE; OSPHRONEMIDAE; PERCIFORMES;

EID: 33744552851     PISSN: 13418998     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10228-005-0321-3     Document Type: Article

References (62)

1. P Banarescu 1995 Zoogeography of fresh waters, vol 3 AULA-Verlag Wiesbaden
2. SK Banerjee KK Misra S Banerjee SP Ray-Chaudhuri 1988 Chromosome numbers, genome sizes, cell volumes and evolution of snakehead fish (family Channidae) J Fish Biol 33 781 789
3. MJ Benton 1993 The fossil record, 2 Chapman & Hall London
4. TM Berra 2001 Freshwater fish distribution Academic Press San Diego
5. M Böhme 2004 Migration history of air-breathing fishes reveals Neogene atmospheric circulation patterns Geology 32 393 396
6. CA Bonou GG Teugels 1985 Révision systématique du genre Parachanna Teugels et Daget, 1984 (Pisces: Channidae) Rev Hydrobiol Trop 18 267 280
7. JL Boore 1999 Animal mitochondrial genomes Nucleic Acids Res 27 1767 1780
8. JC Briggs 1995 Global biogeography Elsevier Amsterdam
9. R Britz 1997 Egg surface structure and larval cement glands in nandid and badid fishes with remarks on phylogeny and biogeography Am Mus Novit 3195 1 17
10. K Chatterjee 1989 Cytotaxonomic and electrophoretic investigations on Indian air-breathing fishes P Das AG Jhingran Fish genetics in India Today & Tomorrow's Printers and Publishers New Delhi 83 99
11. WR Courtenay JD Williams 2004 Snakeheads (Pisces, Channidae): a biological synopsis and risk assessment. US Geological Survey Circular 1251 US Geological Survey Denver, CO
12. PJ Darlington Jr 1957 Zoogeography: the geographical distributions of animals Wiley New York
13. F Day 1876 The fishes of India; being a natural history of the fishes known to inhabit the seas and fresh waters of India, Burma, and Ceylon Fishes India Part 2 169 368 pls 41-78
14. NJ Dhar K Chatterjee 1984 Chromosomal evolution in Indian murrels (Channiformes: Channidae) Caryologia 37 359 371
15. IP Farias G Ortí I Sampaio H Schneider A Meyer 1999 Mitochondrial DNA phylogeny of the family Cichlidae: monophyly and fast molecular evolution of the Neotropical assemblage J Mol Evol 48 703 711
16. WA Gosline 1971 Functional morphology and classification of teleostean fishes The University Press of Hawaii Honolulu
17. Günther 1861 Catalogue of the Acanthopterygian fishes in the collection of the British Museum, vol 3 British Museum London
18. MS Hay IJ Hodgkiss 1981 Hong Kong freshwater fishes Urban Council Publication Hong Kong
19. JP Huelsenbeck FR Ronquist 2001 MRBAYES: Bayesian inference of phylogenetic trees Bioinformatics 17 754 755
20. J-J Jaeger V Courtillot P Tapponnier 1989 Paleontological view of the ages of the Deccan Traps, the Cretaceous/Tertiary boundary, and the India-Asia collision Geology 17 316 319
21. M Kottelat 2001 Fishes of Laos WHT Publications, Colombo Sri Lanka
22. S Kumar SB Hedges 1998 A molecular timescale for vertebrate evolution Nature (Lond) 392 917 920
23. Y Kumazawa M Nishida 1993 Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics J Mol Evol 37 380 398
24. Y Kumazawa M Nishida 2000 Molecular phylogeny of osteoglossoids: a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana Mol Biol Evol 17 1869 1878
25. Y Kumazawa H Ota M Nishida T Ozawa 1996 Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster Mol Biol Evol 13 1242 1254
26. Y Kumazawa M Yamaguchi M Nishida 1999 Mitochondrial molecular clocks and the origin of euteleostean biodiversity: familial radiation of perciforms may have predated the Cretaceous/Tertiary boundary M Kato The biology of biodiversity Springer Tokyo 35 52
27. Y Kumazawa Y Azuma M Nishida 2004 Tempo of mitochondrial gene evolution: can mitochondrial DNA be used to date old divergences? Endocytobiosis Cell Res 15 136 142
28. Lee PG, Ng PKL, Chan WK (1994) The use of two non-mutilative character determination methods for studying the relationship of snakehead fishes (Teleostei; Channidae) in Singapore & Peninsular Malaysia. Proceedings of the fourth Indo-Pacific fish conference. Faculty of Fisheries, Kasetsart University, Bangkok, pp 60-75
29. K Mabuchi M Miya TP Satoh MW Westneat M Nishida 2004 Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae) J Mol Evol 59 287 297
30. M Maehata 1989 Channa argus H Kawanabe N Mizuno Nippon no tansuigyo (Japanese freshwater fishes) (in Japanese) Yama-Kei Publ Tokyo 470 473
31. DY Mai 1978 Identification of freshwater fishes of northern Viet Nam (in Vietnamese) Scientific & Technology Publisher Hanoi
32. I Metcalfe 1999 Gondwana dispersion and Asian accretion: an overview I Metcalfe Gondwana dispersion and Asian accretion Balkema AA, Rotterdam Netherlands 9 28
33. M Miya H Takeshima H Endo NB Ishiguro JG Inoue T Mukai TP Satoh M Yamaguchi A Kawaguchi K Mabuchi SM Shirai M Nishida 2003 Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences Mol Phylogenet Evol 26 121 138
34. P Musikasinthorn 1998 Channa panaw, a new channid fish from the Irrawaddy and Sittang River basins, Myanmar Ichthyol Res 45 355 362
35. P Musikasinthorn 2000 Channa aurantimaculata, a new channid fish from Assam (Brahmaputra River basin), India, with designation of a neotype for C. amphibeus (McClelland, 1845) Ichthyol Res 47 27 37
36. Musikasinthorn P (2003) Channoidei (snakeheads). In: Hutchins M, Thoney A, Loiselle PV, Schlager N (eds) Grzimek's animal life encyclopedia, 2nd edn, vols 4, 5. Fishes I-II. Gale Group, Farmington Hills, MI, pp 437-447
37. P Musikasinthorn Y Taki 2001 Channa siamensis (Günther, 1861), a junior synonym of Channa lucius (Cuvier in Cuvier and Valenciennes, 1831) Ichthyol Res 48 319 324
38. GS Myers 1951 Fresh-water fishes and East Indian zoogeography Stanford Ichthyol Bull 4 11 21
39. GS Myers L Shapovalov 1931 On the identity of Ophicephalus and Channa, two genera of labyrinth fishes Peking Nat Hist Bull 6 33 37
40. JS Nelson 1994 Fishes of the world 3rd edn. Wiley New York
41. PKL Ng KKP Lim 1990 Snakeheads (Pisces: Channidae): natural history, biology and economic importance CL Ming PKL Ng Essays in zoology: papers commemorating the 40th anniversary of the Department of Zoology National University of Singapore Singapore 127 152
42. PKL Ng KKP Lim 1991 The identity of Ophicephalus cyanospilos Bleeker from Sumatra, and a new record of Channa bankanensis (Bleeker) from Peninsular Malaysia (Pisces: Channidae) Raffles Bull Zool 39 119 130
43. R Pethiyagoda 1991 Freshwater fishes of Sri Lanka Wildlife Heritage Trust of Sri Lanka Colombo
44. The Plates Project (1998) Atlas of paleogeographic reconstructions. Plates progress report no. 215. Technical report no. 181. University of Texas Institute for Geophysics, Austin
45. D Posada KA Crandall 1998 Modeltest: testing the model of DNA substitution Bioinformatics 14 817 818
46. LJ Roe 1991 Phylogenetic and ecological significance of Channidae (Osteichthys, Teleostei) from the early Eocene Kuldana Formation of Kohat, Pakistan Univ Mich Contrib Mus Paleontol 28 93 100
47. F Rögl 1998 Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene) Ann Naturhist Mus Wien 99A 279 311
48. AS Romer TS Parsons 1977 The vertebrate body 5th edn. Saunders Philadelphia
49. DE Rosen C Patterson 1990 On Müller's and Cuvier's concepts sof pharyngognath and labyrinth fishes and the classification of percomorph fishes, with an atlas of percomorph dorsal gill arches Am Mus Novit 2983 1 57
50. L Rüber R Britz SO Kullander R Zardoya 2004 Evolutionary and biogeographic patterns of the Badidae (Teleostei: Perciformes) inferred from mitochondrial and nuclear DNA sequence data Mol Phylogenet Evol 32 1010 1022
51. A Senna 1924 Sull'organe respiratoria soprobranchiale degli Afiocefalidi e sus semplificazione in Parophiocephalus subg. N Monit Zool Ital 35 149 160
52. AG Smith DG Smith BM Funnell 1994 Atlas of Mesozoic and Cenozoic coastlines Cambridge University Press New York
53. JS Sparks WL Smith 2005 Freshwater fishes, dispersal ability, and nonevidence: "Gondwana life rafts" to the rescue Syst Biol 54 158 165
54. MLJ Stiassny 1991 Phylogenetic intrarelationships of the family Cichlidae: an overview MHA Keenleyside Cichlid fishes: behaviour, ecology and evolution Chapman & Hall London 1 35
55. JT Streelman R Zardoya A Meyer SA Karl 1998 Multilocus phylogeny of cichlid fishes (Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear loci Mol Biol Evol 15 798 808
56. DL Swofford 2003 PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4 Sinauer Associates Sunderland, MA
57. GG Teugels 1992 Channidae C Leveque D Paugy GG Teugels The fresh and brackish water fishes of west Africa, vol 2 ORSTOM et MRAC Paris 655 658
58. GG Teugels J Daget 1984 Parachanna nom. nov. for the African snake-heads and rehabilitation of Parachanna insignis (Sauvage 1984) (Pisces Channidae) Cybium 8 1 7
59. JL Thorne H Kishino IS Painter 1998 Estimating the rate of evolution of the rate of molecular evolution Mol Biol Evol 15 1647 1657
60. DR Wolstenholme 1992 Animal mitochondrial DNA: structure and evolution Int Rev Cytol 141 173 216
61. Z Yang 1997 PAML: a program package for phylogenetic analyses by maximum likelihood CABIOS 13 555 556
62. C-G Zhang P Musikasinthorn K Watanabe 2002 Channa nox, a new channid fish lacking a pelvic fin from Guangxi, China Ichthyol Res 49 140 146