-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0035651274
-
The phylogeny of plant and animal pathogens in the Ascomycota
-
Berbee M.L. The phylogeny of plant and animal pathogens in the Ascomycota. Physiol. Mol. Plant Pathol. 59 (2001) 165-187
-
(2001)
Physiol. Mol. Plant Pathol.
, vol.59
, pp. 165-187
-
-
Berbee, M.L.1
-
3
-
-
0025875099
-
Archamoebae: the ancestral eukaryotes?
-
Cavalier-Smith T. Archamoebae: the ancestral eukaryotes?. Biosystems 25 (1991) 25-38
-
(1991)
Biosystems
, vol.25
, pp. 25-38
-
-
Cavalier-Smith, T.1
-
4
-
-
0030122584
-
Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa
-
Edlind T.D., Li J., Visvesvara G.S., Vodkin M.H., McLaughlin G.L., and Katiyar S.K. Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa. Mol. Phylogenet. Evol. 5 (1996) 359-367
-
(1996)
Mol. Phylogenet. Evol.
, vol.5
, pp. 359-367
-
-
Edlind, T.D.1
Li, J.2
Visvesvara, G.S.3
Vodkin, M.H.4
McLaughlin, G.L.5
Katiyar, S.K.6
-
5
-
-
0034799296
-
Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: mitochondrion-derived carbon metabolism in microsporidia
-
Fast N.M., and Keeling P.J. Alpha and beta subunits of pyruvate dehydrogenase E1 from the microsporidian Nosema locustae: mitochondrion-derived carbon metabolism in microsporidia. Mol. Biochem. Parasitol. 117 (2001) 201-209
-
(2001)
Mol. Biochem. Parasitol.
, vol.117
, pp. 201-209
-
-
Fast, N.M.1
Keeling, P.J.2
-
6
-
-
0032823290
-
Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: evidence for a microsporidia-fungi relationship and spliceosomal intron loss
-
Fast N.M., Logsdon J.M., and Doolittle W.F. Phylogenetic analysis of the TATA box binding protein (TBP) gene from Nosema locustae: evidence for a microsporidia-fungi relationship and spliceosomal intron loss. Mol. Biol. Evol. 16 (1999) 1415-1419
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1415-1419
-
-
Fast, N.M.1
Logsdon, J.M.2
Doolittle, W.F.3
-
8
-
-
23744439863
-
Evidence from small-subunit ribosomal RNA sequences for a fungal origin of microsporidia
-
Fischer W.M., and Palmer J.D. Evidence from small-subunit ribosomal RNA sequences for a fungal origin of microsporidia. Mol. Phylogenet. Evol. 36 (2005) 606-622
-
(2005)
Mol. Phylogenet. Evol.
, vol.36
, pp. 606-622
-
-
Fischer, W.M.1
Palmer, J.D.2
-
9
-
-
0028937131
-
A proposal for typical meiosis in microsporidians
-
Flegel T.W., and Pasharawipas T. A proposal for typical meiosis in microsporidians. Can. J. Microbiol. 41 (1995) 1-11
-
(1995)
Can. J. Microbiol.
, vol.41
, pp. 1-11
-
-
Flegel, T.W.1
Pasharawipas, T.2
-
10
-
-
0030844640
-
Evidence for loss of mitochondria in microsporidia from a mitochondrial-type HSP70 in Nosema locustae
-
Germot A., Philippe H., and Le Guyader H. Evidence for loss of mitochondria in microsporidia from a mitochondrial-type HSP70 in Nosema locustae. Mol. Biochem. Parasitol. 87 (1997) 159-168
-
(1997)
Mol. Biochem. Parasitol.
, vol.87
, pp. 159-168
-
-
Germot, A.1
Philippe, H.2
Le Guyader, H.3
-
11
-
-
0242578620
-
A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
0037016751
-
Characterization of the mRNA capping apparatus of the microsporidian parasite Encephalitozoon cuniculi
-
Hausmann S., Vivares C.P., and Shuman S. Characterization of the mRNA capping apparatus of the microsporidian parasite Encephalitozoon cuniculi. J. Biol. Chem. 277 (2002) 96-103
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 96-103
-
-
Hausmann, S.1
Vivares, C.P.2
Shuman, S.3
-
13
-
-
13144251194
-
A mitochondrial Hsp70 orthologue in Varimorpha necatrix: molecular evidence that microsporidia once contained mitochondria
-
Hirt R.P., Healey B., Vossbrinck C.R., Canning E.U., and Embley T.M. A mitochondrial Hsp70 orthologue in Varimorpha necatrix: molecular evidence that microsporidia once contained mitochondria. Curr. Biol. 7 (1997) 995-998
-
(1997)
Curr. Biol.
, vol.7
, pp. 995-998
-
-
Hirt, R.P.1
Healey, B.2
Vossbrinck, C.R.3
Canning, E.U.4
Embley, T.M.5
-
14
-
-
0033582323
-
Microsporidia are related to fungi: evidence from the largest subunit of RNA polymerase II and other proteins
-
Hirt R.P., Logsdon J.M., Healy B., Dorey M.W., Doolittle W.F., and Embley T.M. Microsporidia are related to fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 580-585
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 580-585
-
-
Hirt, R.P.1
Logsdon, J.M.2
Healy, B.3
Dorey, M.W.4
Doolittle, W.F.5
Embley, T.M.6
-
15
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Huelsenbeck J.P., and Ronquist F. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2001) 1572-1574
-
(2001)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
16
-
-
3042601821
-
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1 alpha phylogenies
-
Inagaki Y., Susko E., Fast N.M., and Roger A.J. Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1 alpha phylogenies. Mol. Biol. Evol. 21 (2004) 1340-1349
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1340-1349
-
-
Inagaki, Y.1
Susko, E.2
Fast, N.M.3
Roger, A.J.4
-
17
-
-
0034120954
-
Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics
-
James T.A., Porter D., Leander C.A., Vilgalys R., and Longcore J.E. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78 (2000) 336-350
-
(2000)
Can. J. Bot.
, vol.78
, pp. 336-350
-
-
James, T.A.1
Porter, D.2
Leander, C.A.3
Vilgalys, R.4
Longcore, J.E.5
-
18
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones D.T., Taylor W.R., and Thornton J.M. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8 (1992) 275-282
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
19
-
-
0029876871
-
Protein phylogeny of translation elongation factor EF-1alpha suggests microsporidians are extremely ancient eukarotes
-
Kamaishi T., et al. Protein phylogeny of translation elongation factor EF-1alpha suggests microsporidians are extremely ancient eukarotes. J. Mol. Evol. 42 (1996) 257-263
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 257-263
-
-
Kamaishi, T.1
-
20
-
-
0030474879
-
Complete nucleotide sequences of the genes encoding translation elongation factors 1 alpha and 2 from a microsporidian parasite, Glugea plecoglossi: implications for the deepest branching of eukaryotes
-
Kamaishi T., et al. Complete nucleotide sequences of the genes encoding translation elongation factors 1 alpha and 2 from a microsporidian parasite, Glugea plecoglossi: implications for the deepest branching of eukaryotes. J. Biochem. (Tokyo) 120 (1996) 1095-1103
-
(1996)
J. Biochem. (Tokyo)
, vol.120
, pp. 1095-1103
-
-
Kamaishi, T.1
-
21
-
-
0037384263
-
Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia
-
Keeling P.J. Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia. Fungal Genet. Biol. 38 (2003) 298-309
-
(2003)
Fungal Genet. Biol.
, vol.38
, pp. 298-309
-
-
Keeling, P.J.1
-
22
-
-
0029908930
-
Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
-
Keeling P.J., and Doolittle W.F. Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol. Biol. Evol. 13 (1996) 1297-1305
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1297-1305
-
-
Keeling, P.J.1
Doolittle, W.F.2
-
23
-
-
0036406924
-
Microsporidia: biology and evolution of highly reduced intracellular parasites
-
Keeling P.J., and Fast N.M. Microsporidia: biology and evolution of highly reduced intracellular parasites. Annu. Rev. Microbiol. 56 (2002) 93-116
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 93-116
-
-
Keeling, P.J.1
Fast, N.M.2
-
24
-
-
0033977617
-
Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi
-
Keeling P.J., Luker M.A., and Palmer J.D. Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi. Mol. Biol. Evol. 17 (2000) 23-31
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 23-31
-
-
Keeling, P.J.1
Luker, M.A.2
Palmer, J.D.3
-
25
-
-
32044471897
-
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
-
Lutzoni F., et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am. J. Bot. 91 (2004) 1446-1480
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
-
26
-
-
0010956475
-
Interactive analysis of phylogeny and character evolution using the computer program MacClade
-
Maddison W.P., and Maddison D.R. Interactive analysis of phylogeny and character evolution using the computer program MacClade. Folia Primatol. 53 (1989) 190-202
-
(1989)
Folia Primatol.
, vol.53
, pp. 190-202
-
-
Maddison, W.P.1
Maddison, D.R.2
-
27
-
-
0031867294
-
Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin
-
Peyretaillade E., Broussolle V., Peyret P., Metenier G., Gouy M., and Vivares C.P. Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin. Mol. Biol. Evol. 15 (1998) 683-689
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 683-689
-
-
Peyretaillade, E.1
Broussolle, V.2
Peyret, P.3
Metenier, G.4
Gouy, M.5
Vivares, C.P.6
-
28
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
29
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51 (2002) 492-508
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
30
-
-
0036139287
-
CONSEL for assessing the confidence of phylogenetic tree selection
-
Shimodaira H., and Hasegawa M. CONSEL for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001) 1246-1247
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
31
-
-
0036996268
-
Are microsporidia really related to fungi?: a reappraisal based on additional gene sequences from basal fungi
-
Tanabe Y., Watanabe M.M., and Sugiyama J. Are microsporidia really related to fungi?: a reappraisal based on additional gene sequences from basal fungi. Mycol. Res. 106 (2002) 1380-1391
-
(2002)
Mycol. Res.
, vol.106
, pp. 1380-1391
-
-
Tanabe, Y.1
Watanabe, M.M.2
Sugiyama, J.3
-
32
-
-
11944260600
-
Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes
-
Thomarat F., Vivares C.P., and Gouy M. Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes. J. Mol. Evol. 59 (2004) 780-791
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 780-791
-
-
Thomarat, F.1
Vivares, C.P.2
Gouy, M.3
-
33
-
-
0027968068
-
CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0034603818
-
Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi
-
Van de Peer Y., Ben Ali A., and Meyer A. Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi. Gene 246 (2000) 1-8
-
(2000)
Gene
, vol.246
, pp. 1-8
-
-
Van de Peer, Y.1
Ben Ali, A.2
Meyer, A.3
-
35
-
-
3242801484
-
IQPNNI: moving fast through tree space and stopping in time
-
Vin le S., and Von Haeseler A. IQPNNI: moving fast through tree space and stopping in time. Mol. Biol. Evol. 21 (2004) 1565-1571
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1565-1571
-
-
Vin le, S.1
Von Haeseler, A.2
-
36
-
-
0023150599
-
Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes
-
Vossbrinck C.R., Maddox J.V., Friedman S., Debrunner-Vossbrinck B.A., and Woese C.R. Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes. Nature 326 (1987) 411-414
-
(1987)
Nature
, vol.326
, pp. 411-414
-
-
Vossbrinck, C.R.1
Maddox, J.V.2
Friedman, S.3
Debrunner-Vossbrinck, B.A.4
Woese, C.R.5
-
37
-
-
0037158721
-
A mitochondrial remnant in the microsporidian Trachipleistophora hominis
-
Williams B.A.P., Hirt R.P., Lucocq J.M., and Embley T.M. A mitochondrial remnant in the microsporidian Trachipleistophora hominis. Nature 418 (2002) 865-869
-
(2002)
Nature
, vol.418
, pp. 865-869
-
-
Williams, B.A.P.1
Hirt, R.P.2
Lucocq, J.M.3
Embley, T.M.4
|