Information divergence measures-for detection of borders between coding and noncoding DNA regions using recursive entropic segmentation

IEEE Workshop on Statistical Signal Processing Proceedings

Volumn 2003-January, Issue , 2003, Pages 577-580

  Nicorici, D ^a   Astola, J ^a  

^a TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

Author keywords

Area measurement; Bioinformatics; DNA; Entropy; Genomics; Image coding; Image segmentation; Microorganisms; Sequences; Signal processing

Indexed keywords

BIOINFORMATICS; CODES (SYMBOLS); DNA; DNA SEQUENCES; ENTROPY; IMAGE CODING; IMAGE PROCESSING; IMAGE SEGMENTATION; MICROORGANISMS;

AREA MEASUREMENT; DIVERGENCE MEASURES; GENOMICS; HOMOGENEOUS DOMAIN; INFORMATION DIVERGENCE; JENSEN-SHANNON DIVERGENCE; NON-CODING REGION; SEQUENCES;

SIGNAL PROCESSING;

EID: 33744505270     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SSP.2003.1289538     Document Type: Conference Paper

References (5)

1. D. Nicorici, J. Astola, I. Tabus, "Computational identification of exons in DNA with a Hidden Markov Model," Workshop on Genomic Signal Processing and Statistics (GENSIPS), Raleigh, NC, USA, Oct. 2002.
2. W. Li, P. Bernaola-Galvan, F. Hagbighi, I. Grosse, "Applications of recursive segmentation to the analysis of DNA sequences," Computers and Chemistry, Elsevier, Vol. 26, pp. 491-510, 2002.
3. W. Li, "New stopping criteria for segmenting DNA sequences," Physical Review E, Vol. 86(25), pp. 5815-5818, June 2001.
4. P. Bernaola-Galvan, I. Grosse, P. Carpena, J.L. Oliver, R. Roman-Roldan, H.E. Stanley, "Finding borders between coding and noncoding DNA regions by an entropic segmentation method," Physical Review E, vol. 85(6), pp. 1342-1345, 2000.
5. Y. He, A.B. Hamza, H. Krim, "A generalized divergence measure for robust image registration," IEEE Transactions on Signal Processing, vol. 51, no.5, pp. 1211-1220, May 2003.