Use of reporter transposons for tagging and detection of Mycobacterium sp. strain 1B in PAH-contaminated soil

Applied Microbiology and Biotechnology

Volumn 71, Issue 1, 2006, Pages 59-66

  Dandie, C E ^a,b   Bentham, R H ^a   Thomas, S M ^a,c  

^a FLINDERS UNIVERSITY   (Australia)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^c UNIVERSITY OF CANBERRA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CONTAMINATION; DEGRADATION; GROWTH KINETICS; SOIL POLLUTION; SOILS;

CONTAMINATED SOIL; GROWTH RATES; MYCOBACTERIUM; TRANSPOSONS;

BACTERIOLOGY;

POLYCYCLIC AROMATIC HYDROCARBON;

AROMATIC HYDROCARBON; BACTERIUM; INOCULATION; SOIL POLLUTION; STRAIN; TAGGING;

ARTICLE; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BACTERIUM COLONY; BACTERIUM DETECTION; BACTERIUM TRANSFORMATION; CARBON SOURCE; CONTROLLED STUDY; ENVIRONMENT; INOCULATION; MICROCOSM; MYCOBACTERIUM; NONHUMAN; REPORTER GENE; SOIL POLLUTION; TRANSPOSON;

COLONY COUNT, MICROBIAL; DNA TRANSPOSABLE ELEMENTS; GENES, REPORTER; MYCOBACTERIUM; POLYCYCLIC HYDROCARBONS, AROMATIC; SOIL MICROBIOLOGY; SOIL POLLUTANTS; TRANSFORMATION, BACTERIAL;

BACTERIA (MICROORGANISMS); MYCOBACTERIUM; MYCOBACTERIUM SP.;

EID: 33744458705     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-005-0121-8     Document Type: Article

References (22)

1. Bogan BW, Sullivan WR (2003) Physicochemical soil parameters affecting sequestration and mycobacterial biodegradation of polycyclic aromatic hydrocarbons in soil. Chemosphere 52:1717-1726
2. Bogan BW, Lahner LM, Sullivan WR, Paterek JR (2003) Degradation of straight-chain aliphatic and high-molecular-weight polycyclic aromatic hydrocarbons by a strain of Mycobacterium austroafricanum. J Appl Microbiol 94:230-239
3. Boonchan S, Britz ML, Stanley, GA (2000) Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl Environ Microbiol 66:1007-1019
4. Brezna B, Khan AA, Cerniglia CE (2003) Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp. FEMS Microbiol Lett 223:177-183
5. Cheung P-Y, Kinkle BK (2001) Mycobacterium diversity and pyrene mineralization in petroleum-contaminated soils. Appl Environ Microbiol 67(5):2222-2229
6. Dandie CE, Thomas SM, Bentham RH, McClure NC (2004) Physiological characterization of Mycobacterium sp. strain 1B isolated from a bacterial culture able to degrade high-molecular-weight polycyclic aromatic hydrocarbons. J Appl Microbiol 97(2):246-255
7. Gilbert ES, Crowley DE (1998) Repeated application of carvone-induced bacteria to enhance biodegradation of polychlorinated biphenyls in soil. Appl Microbiol Biotechnol 50:489-494
8. Heitkamp AM, Cerniglia CE (1988) Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field. Appl Environ Microbiol 54:1612-1614
9. Jacobs WR Jr, Kalpana GV, Cirillo JD, Pascopella L, Snapper SB, Udani RA, Jones W, Barletta RG, Bloom BR (1991) Genetic systems for mycobacteria. Methods Enzymol 204:537-555
10. Khan AA, Wang R-F, Cao W-W, Doerge DR, Wennerstrom D, Cerniglia CE (2001) Molecular cloning, nucleotide sequence, and expression of genes encoding a polyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl Environ Microbiol 67(8):3577-3585
11. Lee S-H, Cheung M, Irani V, Carroll D, Inamine JM, Howe WR, Maslow JN (2002) Optimisation of electroporation conditions for Mycobacterium avium. Tuberculosis 82(1):1-8
12. Leys NM, Bastiaens L, Verstraete W, Springael D (2004) Influence of the carbon/nitrogen/phosphorus ratio on polycyclic aromatic hydrocarbon degradation by Mycobacterium and Sphingomonas in soil. Appl Microbiol Biotechnol 10.1007/s00253-004-1766-4
13. Leys NM, Ryngaert A, Bastiaens L, Wattiau P, Top EM, Verstraete W, Springael D (2005) Occurrence and community composition of fast-growing Mycobacterium in soils contaminated with polycyclic aromatic hydrocarbons. FEMS Microbiol Ecol 51:375-388
14. Machowski EE, McAdam RA, Derbyshire KM, Mizrahi V (2000) Construction and application of mycobacterial reporter transposons. Gene 253:67-75
15. Miller CD, Hall K, Liang YN, Nieman K, Sorensen D, Issa B, Anderson AJ, Sims RC (2004) Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil. Microb Ecol 48:230-238
16. Newcombe DA, Crowley DE (1999) Bioremediation of atrazine-contaminated soil by repeated applications of atrazine-degrading bacteria. Appl Microbiol Biotechnol 51:877-882
17. Pelicic V, Jackson M, Reyrat J-M, Jacobs WR Jr, Gicquel B, Guilhot C (1997) Efficient allelic exchange and transposon mutagenesis in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 94:10955-10960
18. Schneider J, Grosser R, Jayasimhulu K, Xue W, Warshawsky D (1996) Degradation of pyrene, benz[a]anthracene, and benzo[a] pyrene by Mycobacterium sp. strain RJGII-135, isolated from a former coal gasification site. Appl Environ Microbiol 62:13-19
19. Schwartz E, Scow KM (2001) Repeated inoculation as a strategy for the remediation of low concentrations of phenanthrene in soil. Biodegradation 12(3):201-207
20. Snapper SB, Melton RE, Mustafa S, Kieser TB, Jacobs WR Jr (1990) Isolation and characterization of efficient transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4:1911-1919
21. Van der Rest ME, Lange C, Molenaar D (1999) A heat shock following electroporation induces highly efficient transformation of Corynebactenum glutamicum with xenogeneic plasmid DNA. Appl Microbiol Biotechnol 52:541-545
22. Wattiau P, Springael D, Agathos SN, Wuertz S (2002) Use of the pAL5000 replicon in PAH-degrading mycobacteria: application for strain labelling and promoter probing. Appl Microbiol Biotechnol 59(6):700-705