Exploring the lower part of discrete polymer model energy landscapes

Europhysics Letters

Volumn 74, Issue 4, 2006, Pages 726-732

  Wolfinger, Michael T ^a   Will, Sebastian ^b   Hofacker, Ivo L ^a   Backofen, Rolf ^b   Stadler, Peter F ^c,d  

^a UNIVERSITY OF VIENNA   (Austria)

^b UNIVERSITY OF FREIBURG   (Germany)

^c UNIVERSITY OF LEIPZIG   (Germany)

^d SANTA FE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33646878794     PISSN: 02955075     EISSN: 12864854     Source Type: Journal    
DOI: 10.1209/epl/i2005-10577-0     Document Type: Article

References (24)

1. KLOTZ T. and KOBE S., J. Phys. A, 27 (1994) L95.
2. GARSTECKI P., HOANG T. X. and CIEPLAK M., Phys. Rev. E, 60 (1999) 3219.
3. DOYE J. P., MILLER M. A. and WELSH D. J., J. Chem. Phys., 111 (1999) 8417.
4. FLAMM C., FONTANA W., HOFACKER I. and SCHUSTER P., RNA, 6 (2000) 325.
5. CHAN H. S. and DILL K. A., J. Chem. Phys., 100 (1994) 9238.
6. FLAMM C., HOFACKER I. L., STADLER P. F. and WOLFINGER M. T., Z. Phys. Chem., 216 (2002) 155.
7. REIDYS C. M. and STADLER P. F., SIAM Rev., 44 (2002) 3.
8. ZUKER M. and STIEGLER P., Nucl. Acids Res., 9 (1981) 133.
9. BERGER B. and LEIGHTON T., J. Comput. Biol., 5 (1998) 27.
10. BACKOFEN R. and WILL S., J. Constr., 11 (2006) 5.
11. WUCHTY S., FONTANA W., HOFACKER I. L. and SCHUSTER P., Biopolymers, 49 (1998) 145.
12. UNGER R. and MOULT J., J. Mol. Biol., 231 (1993) 75.
13. WEI G., MOUSSEAU N. and DERREUMAUX P., J. Chem. Phys., 117 (2002) 11379.
14. BACKOFEN R., WILL S. and BORNBERG-BAUER E., Bioinformatics, 15 (1999) 234.
15. VERTECHI A. M. and VIRASORO M. A., J. Phys. (Paris), 50 (1989) 2325.
16. RAMMAL R., TOULOUSE G. and VIRASORO M. A., Rev. Mod. Phys., 58 (1986) 765.
17. WOLFINGER M. T., SVRCEK-SEILER W. A., FLAMM C., HOFACKER I. L. and STADLER P. F., J. Phys. A, 37 (2004) 4731.
18. MADRAS N. and SOKAL A. D., J. Stat. Phys., 50 (1988) 109.
19. MADRAS N. and SOKAL A. D., J. Stat. Phys., 47 (1987) 573.
20. CHAN H. S., Nature Struct. Biol., 6 (1999) 994.
21. WANG J. and WANG W., Nature Struct. Bio., 6 (1999) 1033.
22. FAN K. and WANG W., J. Mol. Biol., 328 (2003) 921.
23. GOVINDARAJAN S. and GOLDSTEIN R. A., Proc. Natl. Acad. Sci. U.S.A., 93 (1996) 3341.
24. WROE R., BORNBERG-BAUER E. and CHAN H. S., Biophys J., 88 (2005) 118.