-
1
-
-
2442637669
-
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
-
Castillo-Davis,C.I. et al. (2004) The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint. Genome Res., 14, 802-811.
-
(2004)
Genome Res.
, vol.14
, pp. 802-811
-
-
Castillo-Davis, C.I.1
-
2
-
-
10744225908
-
Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans
-
Cutter,A.D. et al. (2003) Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans. Genome Res., 13, 2651-2657.
-
(2003)
Genome Res.
, vol.13
, pp. 2651-2657
-
-
Cutter, A.D.1
-
3
-
-
19344363466
-
Preferential duplication of conserved proteins in eukaryotic genomes
-
Davis,J.C. and Petrov,D.A. (2004) Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol, 2, E55.
-
(2004)
PLoS Biol
, vol.2
-
-
Davis, J.C.1
Petrov, D.A.2
-
4
-
-
0031743421
-
Profile hidden Markov models
-
Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
5
-
-
0003991665
-
An Introduction to the Bootstrap
-
Chapman and Hall, Cambridge
-
Efron,B. and Tibshirani,R. (1993) An Introduction to the Bootstrap. Chapman and Hall, Cambridge.
-
(1993)
-
-
Efron, B.1
Tibshirani, R.2
-
6
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein,J. (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol., 17, 368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
8
-
-
16344381521
-
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks
-
Hahn,M.W. and Kern,A.D. (2005) Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. Mol. Biol. Evol., 22, 803-805.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 803-805
-
-
Hahn, M.W.1
Kern, A.D.2
-
9
-
-
0036846746
-
The origin and evolution of model organisms
-
Hedges,S.B. (2002) The origin and evolution of model organisms. Nat. Rev. Genet., 3, 838-849.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 838-849
-
-
Hedges, S.B.1
-
10
-
-
0035963414
-
Protein dispensability and rate of evolution
-
Hirsh,A.E. and Fraser,H.B. (2001) Protein dispensability and rate of evolution. Nature, 411, 1046-1049.
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
11
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard,T. et al. (2002) The Ensembl genome database project. Nucleic Acids Res., 30, 38-41.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
-
12
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath,R.S. et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature, 421, 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
-
13
-
-
16444381885
-
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
-
Koonin,E.V. et al. (2004) A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol., 5, R7.
-
(2004)
Genome Biol.
, vol.5
-
-
Koonin, E.V.1
-
14
-
-
0345864022
-
SMART 4.0: Towards genomic data integration
-
Letunic,I. et al. (2004) SMART 4.0: Towards genomic data integration. Nucleic Acids Res., 32, D142-D144.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Letunic, I.1
-
15
-
-
0347568598
-
The relationship of protein conservation and sequence length
-
Lipman,D.J. et al. (2002) The relationship of protein conservation and sequence length. BMC Evol. Biol., 2, 20.
-
(2002)
BMC Evol. Biol.
, vol.2
, pp. 20
-
-
Lipman, D.J.1
-
16
-
-
9144264169
-
A map of the interactome network of the metazoan C.elegans
-
Li,S. et al. (2004) A map of the interactome network of the metazoan C.elegans. Science, 303, 540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
-
17
-
-
0036677029
-
Predicting protein cellular localization using a domain projection method
-
Mott,R. et al. (2002) Predicting protein cellular localization using a domain projection method. Genome Res., 12, 1168-1174.
-
(2002)
Genome Res.
, vol.12
, pp. 1168-1174
-
-
Mott, R.1
-
18
-
-
0036134748
-
Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method
-
Müller,T. et al. (2002) Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method. Mol. Biol. Evol., 19, 8-13.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 8-13
-
-
Müller, T.1
-
19
-
-
0034922289
-
Modeling amino acid replacement
-
Müller,T. and Vingron,M. (2000) Modeling amino acid replacement. J. Comput. Biol., 7, 761-776.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 761-776
-
-
Müller, T.1
Vingron, M.2
-
20
-
-
0344480548
-
Inferring sub-cellular localization through automated lexical analysis
-
Nair,R. and Rost,B. (2002) Inferring sub-cellular localization through automated lexical analysis. Bioinformatics, 18, S78-S86.
-
(2002)
Bioinformatics
, vol.18
-
-
Nair, R.1
Rost, B.2
-
21
-
-
0030614959
-
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
Nielsen,H. et al. (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng., 10, 1-6.
-
(1997)
Protein Eng.
, vol.10
, pp. 1-6
-
-
Nielsen, H.1
-
22
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm,M. et al. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
-
23
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Glasgow,J. et al. (eds.) AAAI Press
-
Sonnhammer,E.L.L., von Heijne,G. and Krogh,A. (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. In Glasgow,J. et al. (eds.), Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology. AAAI Press, pp. 175-182.
-
(1998)
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology
, pp. 175-182
-
-
Sonnhammer, E.L.L.1
von Heijne, G.2
Krogh, A.3
-
24
-
-
0031458591
-
DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment
-
Stoye,J. et al. (1997) DCA: An efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment. Comput. Appl. Biosci., 13, 625-626.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 625-626
-
-
Stoye, J.1
-
25
-
-
0031857684
-
Rose: Generating sequence families
-
Stoye,J. et al. (1998) Rose: Generating sequence families. Bioinformatics, 14, 157-163.
-
(1998)
Bioinformatics
, vol.14
, pp. 157-163
-
-
Stoye, J.1
-
26
-
-
0033593549
-
Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi
-
Wang,D.Y., Kumar,S., Hedges,S.B. et al. (1999) Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi. Proc. Biol. sci., 266, 163-171.
-
(1999)
Proc. Biol. Sci.
, vol.266
, pp. 163-171
-
-
Wang, D.Y.1
Kumar, S.2
Hedges, S.B.3
-
27
-
-
0347766006
-
Elevated rates of protein secretion, evolution, and disease among tissue-specific genes
-
Winter,E.E. et al. (2004) Elevated rates of protein secretion, evolution, and disease among tissue-specific genes. Genome Res., 14, 54-61.
-
(2004)
Genome Res.
, vol.14
, pp. 54-61
-
-
Winter, E.E.1
-
28
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton,J.C. and Federhen,S. (1993) Statistics of local complexity in amino acid sequences and sequence databases. Comput. Biochem., 17, 149-163.
-
(1993)
Comput. Biochem.
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
29
-
-
0029970097
-
Maximum-likelihood models for combined analyses of multiple sequence data
-
Yang,Z. (1996) Maximum-likelihood models for combined analyses of multiple sequence data. J. Mol. Evol., 42, 587-596.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 587-596
-
-
Yang, Z.1
-
30
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang,Z. (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci., 13, 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
|