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Volumn 256, Issue 1-4, 2006, Pages 287-295

Changes in microbial communities associated with the conditioning of filter material in recirculating aquaculture systems of the pufferfish Takifugu rubripes

Author keywords

Filter material; Microflora; Nitrifying bacteria; Nitrosomonas; Recirculating aquaculture systems

Indexed keywords

AQUACULTURE; FILTER; FISH; MICROBIAL COMMUNITY; NITRIFYING BACTERIUM;

EID: 33646772105     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2006.02.037     Document Type: Article
Times cited : (36)

References (38)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R.I., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59 (1995) 143-169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0141571401 scopus 로고    scopus 로고
    • Linking diversity and stable isotope fractionation in ammonia-oxidizing bacteria
    • Casciotti K.L., Sigman D.M., and Ward B.B. Linking diversity and stable isotope fractionation in ammonia-oxidizing bacteria. Geomicrobiol. J. 20 (2003) 335-353
    • (2003) Geomicrobiol. J. , vol.20 , pp. 335-353
    • Casciotti, K.L.1    Sigman, D.M.2    Ward, B.B.3
  • 4
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell M.T., and Kirchman D.L. Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 66 (2000) 5116-5122
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 5
    • 0038342846 scopus 로고    scopus 로고
    • Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon
    • Egli K., Bosshard F., Werlen C., Lais P., Siegrist H., Zehnder A.J., and Van der Meer J.R. Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microb. Ecol. 45 (2003) 419-432
    • (2003) Microb. Ecol. , vol.45 , pp. 419-432
    • Egli, K.1    Bosshard, F.2    Werlen, C.3    Lais, P.4    Siegrist, H.5    Zehnder, A.J.6    Van der Meer, J.R.7
  • 7
    • 84895379422 scopus 로고
    • New sensitive and direct method for automatic determination of ammonia in sea-water
    • Grasshof K., and Johannse H. New sensitive and direct method for automatic determination of ammonia in sea-water. J. Du. Conseil. 34 (1972) 516-521
    • (1972) J. Du. Conseil. , vol.34 , pp. 516-521
    • Grasshof, K.1    Johannse, H.2
  • 8
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of the population parameters
    • Good I.J. The population frequencies of species and the estimation of the population parameters. Biometrika 40 (1953) 237-264
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 9
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: bayesian inference of phylogeny
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 10
    • 0000917309 scopus 로고
    • Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size
    • Heck K.L.J., van Belle G., and Simberloff D. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56 (1975) 1489-1491
    • (1975) Ecology , vol.56 , pp. 1489-1491
    • Heck, K.L.J.1    van Belle, G.2    Simberloff, D.3
  • 12
    • 0000752502 scopus 로고
    • The nonconcept of species diversity: a critique and alternative parameters
    • Hurlbert S.H. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52 (1971) 577-586
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hurlbert, S.H.1
  • 14
    • 27644532742 scopus 로고    scopus 로고
    • Characteristics of ammonium removal by heterotrophic nitrification-aerobic denitrification by Alcaligenes faecalis No. 4
    • Joo H.S., Hirai M., and Shoda M. Characteristics of ammonium removal by heterotrophic nitrification-aerobic denitrification by Alcaligenes faecalis No. 4. J. Biosci. Bioeng. 100 (2005) 184-191
    • (2005) J. Biosci. Bioeng. , vol.100 , pp. 184-191
    • Joo, H.S.1    Hirai, M.2    Shoda, M.3
  • 15
    • 85008118413 scopus 로고
    • Biochemical studies on the bacteria in aquarium with circulating system: I. Changes of the qualities of breeding water and bacterial population of the aquarium during fish cultivation
    • Kawai A., Yoshida Y., and Kimata M. Biochemical studies on the bacteria in aquarium with circulating system: I. Changes of the qualities of breeding water and bacterial population of the aquarium during fish cultivation. Bull. Jpn. Soc. Sci. Fish. 30 (1964) 55-62
    • (1964) Bull. Jpn. Soc. Sci. Fish. , vol.30 , pp. 55-62
    • Kawai, A.1    Yoshida, Y.2    Kimata, M.3
  • 17
    • 0033914692 scopus 로고    scopus 로고
    • Mathematical modeling of autotrophic denitrification in a nitrifying biofilm of a rotating biological contactor
    • Koch G., Egli K., Van der Meer J.R., and Siegrist H. Mathematical modeling of autotrophic denitrification in a nitrifying biofilm of a rotating biological contactor. Water Sci. Technol. 41 (2000) 191-198
    • (2000) Water Sci. Technol. , vol.41 , pp. 191-198
    • Koch, G.1    Egli, K.2    Van der Meer, J.R.3    Siegrist, H.4
  • 18
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E., and Goodfellow M. (Eds), John Wiley and Sons, NY
    • Lane D. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), John Wiley and Sons, NY 115-147
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-147
    • Lane, D.1
  • 19
    • 0025982062 scopus 로고
    • Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
    • Marchuk D., Drumm M., Saulono A., and Collins F.S. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res. 19 (1991) 1154
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1154
    • Marchuk, D.1    Drumm, M.2    Saulono, A.3    Collins, F.S.4
  • 21
    • 0036951932 scopus 로고    scopus 로고
    • Disruption of narH, narJ, and moaE inhibits heterotrophic nitrification in Pseudomonas strain M19
    • Nemergut D.R., and Schmidt S.K. Disruption of narH, narJ, and moaE inhibits heterotrophic nitrification in Pseudomonas strain M19. Appl. Environ. Microbiol. 68 (2002) 6462-6465
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 6462-6465
    • Nemergut, D.R.1    Schmidt, S.K.2
  • 22
    • 0002050678 scopus 로고    scopus 로고
    • Methods for analysis of the intestinal microflora
    • Tannock G.W. (Ed), Horizontal Scientific Press, Norfolk
    • O'Sullivan D. Methods for analysis of the intestinal microflora. In: Tannock G.W. (Ed). Probiotics, A Critical Review (1999), Horizontal Scientific Press, Norfolk 23-44
    • (1999) Probiotics, A Critical Review , pp. 23-44
    • O'Sullivan, D.1
  • 23
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter K.G., and Feig Y.S. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25 (1980) 943-948
    • (1980) Limnol. Oceanogr. , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 24
    • 0021239665 scopus 로고
    • Direct counting of bacteria preserved with Lugol iodine solution
    • Pomroy A.J. Direct counting of bacteria preserved with Lugol iodine solution. Appl. Environ. Microbiol. 47 (1984) 1191-1192
    • (1984) Appl. Environ. Microbiol. , vol.47 , pp. 1191-1192
    • Pomroy, A.J.1
  • 25
    • 0141502465 scopus 로고    scopus 로고
    • 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads
    • Purkhold U., Wagner M., Timmermann G., Pommerening-Röser A., and Koops H.-P. 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads. Int. J. Syst. Evol. Microbiol. 53 (2003) 1485-1494
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1485-1494
    • Purkhold, U.1    Wagner, M.2    Timmermann, G.3    Pommerening-Röser, A.4    Koops, H.-P.5
  • 26
    • 33644559641 scopus 로고    scopus 로고
    • Molecular identification of intestinal microflora in Takifugu niphobles
    • Shiina A., Itoi S., Washio S., and Sugita H. Molecular identification of intestinal microflora in Takifugu niphobles. Comp. Biochem. Physiol., D 1 (2006) 128-132
    • (2006) Comp. Biochem. Physiol., D , vol.1 , pp. 128-132
    • Shiina, A.1    Itoi, S.2    Washio, S.3    Sugita, H.4
  • 27
    • 0031788302 scopus 로고    scopus 로고
    • Nitrogen loss in a nitrifying rotating contactor treating ammonium-rich wastewater without organic carbon
    • Siegrist H., Reithaar S., Koch G., and Lais P. Nitrogen loss in a nitrifying rotating contactor treating ammonium-rich wastewater without organic carbon. Water Sci. Technol. 38 (1998) 241-248
    • (1998) Water Sci. Technol. , vol.38 , pp. 241-248
    • Siegrist, H.1    Reithaar, S.2    Koch, G.3    Lais, P.4
  • 30
    • 10644220949 scopus 로고
    • Distribution and activity of nitrogen-cycle bacteria in water-sediment systems with different concentrations of oxygen
    • Colwell R.R., and Morita R.Y. (Eds), University Park Press, Baltimore
    • Sugahara I., Sugiyama M., and Kawai A. Distribution and activity of nitrogen-cycle bacteria in water-sediment systems with different concentrations of oxygen. In: Colwell R.R., and Morita R.Y. (Eds). Effect of the Ocean Environment on Microbial Activities (1974), University Park Press, Baltimore 327-340
    • (1974) Effect of the Ocean Environment on Microbial Activities , pp. 327-340
    • Sugahara, I.1    Sugiyama, M.2    Kawai, A.3
  • 31
    • 10644265395 scopus 로고    scopus 로고
    • Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish
    • Sugita H., Nakamura H., and Shimada T. Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish. Aquaculture 243 (2005) 403-409
    • (2005) Aquaculture , vol.243 , pp. 403-409
    • Sugita, H.1    Nakamura, H.2    Shimada, T.3
  • 32
    • 33646804205 scopus 로고    scopus 로고
    • * and Other Methods), Version 4. Sinauer, Sunderland, MA.
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C. Bacterial evolution. Microbiol. Rev. 51 (1987) 221-271
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.1
  • 38
    • 0036195362 scopus 로고    scopus 로고
    • Nitrogen cycling in the ocean: new perspectives on processes and paradigms
    • Zehr J.P., and Ward B.B. Nitrogen cycling in the ocean: new perspectives on processes and paradigms. Appl. Environ. Microbiol. 68 (2002) 1015-1024
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1015-1024
    • Zehr, J.P.1    Ward, B.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.