메뉴 건너뛰기




Volumn 4, Issue 5, 2006, Pages 732-738

A nonparametric test reveals selection for rapid flowering in the Arabidopsis genome

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; FLOWERING; GENETIC POLYMORPHISM; GENOME; HAPLOTYPE; VERNALIZATION; ALLELE; EVOLUTION; FLOWER; GENETIC SELECTION; GENETICS; NONPARAMETRIC TEST; PHYSIOLOGY; POPULATION DYNAMICS; TIME;

EID: 33646730881     PISSN: 15457885     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0040137     Document Type: Article
Times cited : (112)

References (34)
  • 1
    • 0037066492 scopus 로고    scopus 로고
    • Arabidopsis, the rosetta stone of flowering time?
    • Simpson GG, Dean C (2002) Arabidopsis, the rosetta stone of flowering time? Science 296: 285-289.
    • (2002) Science , vol.296 , pp. 285-289
    • Simpson, G.G.1    Dean, C.2
  • 2
    • 0001258283 scopus 로고
    • Effects of photoperiod and vernalization on the number of leaves at flowering in 32 Arabidopsis thaliana (Brassicaceae) ecotypes
    • Karlsson BH, Sills GR, Nienhuis J (1993) Effects of photoperiod and vernalization on the number of leaves at flowering in 32 Arabidopsis thaliana (Brassicaceae) ecotypes. Am J Bot 80: 646-648.
    • (1993) Am J Bot , vol.80 , pp. 646-648
    • Karlsson, B.H.1    Sills, G.R.2    Nienhuis, J.3
  • 3
    • 0031058195 scopus 로고    scopus 로고
    • Analysis of flowering time in ecotypes of Arabidopsis thaliana
    • Sanda SL, John M, Amasino RM (1997) Analysis of flowering time in ecotypes of Arabidopsis thaliana. J Hered 88: 69-72.
    • (1997) J Hered , vol.88 , pp. 69-72
    • Sanda, S.L.1    John, M.2    Amasino, R.M.3
  • 4
    • 0033301744 scopus 로고    scopus 로고
    • The effect of seed and rosette cold treatment on germination and flowering time in some Arabidopsis thaliana (Brassicaceae) ecotypes
    • Nordborg M, Bergelson J (1999) The effect of seed and rosette cold treatment on germination and flowering time in some Arabidopsis thaliana (Brassicaceae) ecotypes. Am J Bot 86: 470-475.
    • (1999) Am J Bot , vol.86 , pp. 470-475
    • Nordborg, M.1    Bergelson, J.2
  • 5
    • 0038459045 scopus 로고    scopus 로고
    • Analysis of the molecular basis of flowering time variation in Arabidopsis accessions
    • Gazzani S, Gendall AR, Lister C, Dean C (2003) Analysis of the molecular basis of flowering time variation in Arabidopsis accessions. Plant Physiol 132: 1107-1114.
    • (2003) Plant Physiol , vol.132 , pp. 1107-1114
    • Gazzani, S.1    Gendall, A.R.2    Lister, C.3    Dean, C.4
  • 6
    • 0042190562 scopus 로고    scopus 로고
    • Attenuation of FLOWERING LOCUS C activity as a mechanism for the evolution of summer-annual flowering behavior in Arabidopsis
    • USA
    • Michaels SD, He YH, Scortecci KC, Amasino RM (2003) Attenuation of FLOWERING LOCUS C activity as a mechanism for the evolution of summer-annual flowering behavior in Arabidopsis. Proc Natl Acad Sci USA 100: 10102-10107.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 10102-10107
    • Michaels, S.D.1    He, Y.H.2    Scortecci, K.C.3    Amasino, R.M.4
  • 7
    • 10844255772 scopus 로고    scopus 로고
    • Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci
    • Hagenblad J, Tang C, Molitor J, Werner J, Zhao K, et al. (2004) Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci. Genetics 168: 1627-1638.
    • (2004) Genetics , vol.168 , pp. 1627-1638
    • Hagenblad, J.1    Tang, C.2    Molitor, J.3    Werner, J.4    Zhao, K.5
  • 8
    • 1842584810 scopus 로고    scopus 로고
    • A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA
    • USA
    • Stinchcombe JR, Weinig C, Ungerer M, Olsen KM, Mays C, et al. (2004) A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA. Proc Natl Acad Sci USA 101: 4712-4717.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 4712-4717
    • Stinchcombe, J.R.1    Weinig, C.2    Ungerer, M.3    Olsen, K.M.4    Mays, C.5
  • 9
    • 26944454449 scopus 로고    scopus 로고
    • Role of FRIGIDA and FLOWERING LOCUS C in determining variation in flowering time of Arabidopsis
    • Shindo C, Aranzana MJ, Lister C, Baxter C, Nicholls C, et al. (2005) Role of FRIGIDA and FLOWERING LOCUS C in determining variation in flowering time of Arabidopsis. Plant Physiol 138: 1163-1173.
    • (2005) Plant Physiol , vol.138 , pp. 1163-1173
    • Shindo, C.1    Aranzana, M.J.2    Lister, C.3    Baxter, C.4    Nicholls, C.5
  • 10
    • 23344452977 scopus 로고    scopus 로고
    • FRIGIDA-independent variation in flowering time of natural A. thaliana accessions
    • Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, et al. (2005) FRIGIDA-independent variation in flowering time of natural A. thaliana accessions. Genetics 170: 1197-1207.
    • (2005) Genetics , vol.170 , pp. 1197-1207
    • Werner, J.D.1    Borevitz, J.O.2    Uhlenhaut, N.H.3    Ecker, J.R.4    Chory, J.5
  • 11
    • 0034644643 scopus 로고    scopus 로고
    • Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time
    • Johanson U, West J, Lister C, Michaels S, Amasino R, et al. (2000) Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. Science 290: 344-347.
    • (2000) Science , vol.290 , pp. 344-347
    • Johanson, U.1    West, J.2    Lister, C.3    Michaels, S.4    Amasino, R.5
  • 12
    • 0036263045 scopus 로고    scopus 로고
    • Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana
    • Hagenblad J, Nordborg M (2002) Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana. Genetics 161: 289-298.
    • (2002) Genetics , vol.161 , pp. 289-298
    • Hagenblad, J.1    Nordborg, M.2
  • 13
    • 0028879826 scopus 로고
    • A population genetic test of selection at the molecular-level
    • Taylor MFJ, Shen Y, Kreitman ME (1995) A population genetic test of selection at the molecular-level. Science 270: 1497-1499.
    • (1995) Science , vol.270 , pp. 1497-1499
    • Taylor, M.F.J.1    Shen, Y.2    Kreitman, M.E.3
  • 14
    • 22744434580 scopus 로고    scopus 로고
    • The pattern of polymorphism in Arabidopsis thaliana
    • DOI: 10. 1371/journal.pbio.0030196
    • Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, et al. (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biol 3: e196. DOI: 10. 1371/journal.pbio.0030196
    • (2005) PLoS Biol , vol.3
    • Nordborg, M.1    Hu, T.T.2    Ishino, Y.3    Jhaveri, J.4    Toomajian, C.5
  • 15
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: What history has to tell us
    • Nordborg M, Tavaré S (2002) Linkage disequilibrium: What history has to tell us. Trends Genet 18: 83-90.
    • (2002) Trends Genet , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavaré, S.2
  • 16
    • 0141789996 scopus 로고    scopus 로고
    • The extent of linkage disequilibrium and haplotype sharing around a polymorphic site
    • Innan H, Nordborg M (2003) The extent of linkage disequilibrium and haplotype sharing around a polymorphic site. Genetics165: 437-444.
    • (2003) Genetics , vol.165 , pp. 437-444
    • Innan, H.1    Nordborg, M.2
  • 17
    • 0016241994 scopus 로고
    • The age of an allele in a finite population
    • Maruyama T (1974) The age of an allele in a finite population. Genet Res 23: 137-143.
    • (1974) Genet Res , vol.23 , pp. 137-143
    • Maruyama, T.1
  • 18
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith J, Haigh J (1974) The hitch-hiking effect of a favourable gene. Genet Res 23: 23-35.
    • (1974) Genet Res , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 20
    • 0028215929 scopus 로고
    • Evidence for positive selection in the superoxide-dismutase (SOD) region of Drosophila melanogaster
    • Hudson RR, Bailey K, Skarecky D, Kwiatowski J, Ayala FJ (1994) Evidence for positive selection in the superoxide-dismutase (SOD) region of Drosophila melanogaster. Genetics 136: 1329-1340.
    • (1994) Genetics , vol.136 , pp. 1329-1340
    • Hudson, R.R.1    Bailey, K.2    Skarecky, D.3    Kwiatowski, J.4    Ayala, F.J.5
  • 21
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim Y, Stephan W (2002) Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 22
    • 0034976976 scopus 로고    scopus 로고
    • The use of intraallelic variability for testing neutrality and estimating population growth rate
    • Slatkin M, Bertorelle G (2001) The use of intraallelic variability for testing neutrality and estimating population growth rate. Genetics 158: 865-874.
    • (2001) Genetics , vol.158 , pp. 865-874
    • Slatkin, M.1    Bertorelle, G.2
  • 23
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti PC, Reich DE, Higgins JM, Levine HZ, Richter DJ, et al. (2002) Detecting recent positive selection in the human genome from haplotype structure. Nature 419: 832-837.
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1    Reich, D.E.2    Higgins, J.M.3    Levine, H.Z.4    Richter, D.J.5
  • 24
    • 0141455095 scopus 로고    scopus 로고
    • A method for detecting recent selection in the human genome from allele age estimates
    • Toomajian C, Ajioka RS, Jorde LB, Kushner JP, Kreitman M (2003) A method for detecting recent selection in the human genome from allele age estimates. Genetics 165: 287-297.
    • (2003) Genetics , vol.165 , pp. 287-297
    • Toomajian, C.1    Ajioka, R.S.2    Jorde, L.B.3    Kushner, J.P.4    Kreitman, M.5
  • 25
    • 18344382775 scopus 로고    scopus 로고
    • Epistasis and balanced polymorphism influencing complex trait variation
    • Kroymann J, Mitchell-Olds T (2005) Epistasis and balanced polymorphism influencing complex trait variation. Nature 435: 95-98.
    • (2005) Nature , vol.435 , pp. 95-98
    • Kroymann, J.1    Mitchell-Olds, T.2
  • 26
    • 55449105229 scopus 로고    scopus 로고
    • Positive selection of a pre-expansion CAG repeat of the human SCA2 gene
    • DOI: 10.1371/journal.pgen.0010041
    • Yu F, Sabeti PC, Hardenbol P, Fu Q, Fry B, et al. (2005) Positive selection of a pre-expansion CAG repeat of the human SCA2 gene. PLoS Genet 1: e41. DOI: 10.1371/journal.pgen.0010041
    • (2005) PLoS Genet , vol.1
    • Yu, F.1    Sabeti, P.C.2    Hardenbol, P.3    Fu, Q.4    Fry, B.5
  • 28
    • 27844526221 scopus 로고    scopus 로고
    • The case for selection at CCR5-D32
    • DOI: 10.1371/journal.pbio. 0030378
    • Sabeti PC, Walsh E, Schaffner SF, Varilly P, Fry B, et al. (2005) The case for selection at CCR5-D32. PLoS Biol 3: e378. DOI: 10.1371/journal.pbio. 0030378
    • (2005) PLoS Biol , vol.3
    • Sabeti, P.C.1    Walsh, E.2    Schaffner, S.F.3    Varilly, P.4    Fry, B.5
  • 29
    • 17344372255 scopus 로고    scopus 로고
    • Dating the origin of the CCR5-D32 AIDS-resistance allele by the coalescence of haplotypes
    • Stephens JC, Reich DE, Goldstein DB, Shin HD, Smith MW, et al. (1998) Dating the origin of the CCR5-D32 AIDS-resistance allele by the coalescence of haplotypes. Am J Hum Genet 62: 1507-1515.
    • (1998) Am J Hum Genet , vol.62 , pp. 1507-1515
    • Stephens, J.C.1    Reich, D.E.2    Goldstein, D.B.3    Shin, H.D.4    Smith, M.W.5
  • 30
    • 0035047175 scopus 로고    scopus 로고
    • Speciation, hybrid zones and phylogeography - Or seeing genes in space and time
    • Hewitt GM (2001) Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Mol Ecol 10: 537-549.
    • (2001) Mol Ecol , vol.10 , pp. 537-549
    • Hewitt, G.M.1
  • 31
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res 12: 1805-1814.
    • (2002) Genome Res , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 32
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 33
    • 0034603206 scopus 로고    scopus 로고
    • Integrated cytogenetic map of Chromosome arm 4S in A. thaliana: Structural organization of heterochromatic knob and centromere region
    • Fransz PF, Armstrong S, de Jong JH, Parnell LD, van Drunen C, et al. (2000) Integrated cytogenetic map of Chromosome arm 4S in A. thaliana: Structural organization of heterochromatic knob and centromere region. Cell 100: 367-376.
    • (2000) Cell , vol.100 , pp. 367-376
    • Fransz, P.F.1    Armstrong, S.2    De Jong, J.H.3    Parnell, L.D.4    Van Drunen, C.5
  • 34
    • 84966190558 scopus 로고
    • Population genetic structure and outcrossing rate of Arabidopsis thaliana (L.) Heynh
    • Abbott RJ, Gomes MF (1989) Population genetic structure and outcrossing rate of Arabidopsis thaliana (L.) Heynh. Heredity 62: 411-418.
    • (1989) Heredity , vol.62 , pp. 411-418
    • Abbott, R.J.1    Gomes, M.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.