Two decades experience of typing Acinetobacter strains: Evolving methods and clinical applications

Antibiotiques

Volumn 8, Issue 2, 2006, Pages 108-116

  Dijkshoorn, L ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Acinetobacter baumannii; Typing methods

Indexed keywords

ANTIBIOTIC AGENT;

ACINETOBACTER BAUMANNII; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE TYPING; BIOTYPE; CROSS INFECTION; DATA BASE; GEOGRAPHY; HOSPITAL INFECTION; MULTIDRUG RESISTANCE; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHENOTYPE; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RIBOTYPING; SCREENING; SEROTYPE;

EID: 33646684986     PISSN: 12945501     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1294-5501(06)70806-8     Document Type: Article

References (58)

1. HENRIKSEN SD. Moraxella, Acinetobacter, and the Mimeae. Bacteriol Rev 1973 ; 37 : 522-61.
2. BAUMANN P, DOUDOROFF M, STANIER RY. A study of the Moraxella group II. Oxidative-negative species (genus Acinetobacter). J Bacteriol 1968 ; 95 : 1520-41.
3. BOUVET PJM, GRIMONT PAD. Taxonomy of the genus Acinetobacter with the recognition of Acinetobacter baumannii sp. nov., Acinetobacter haemolyticus sp. nov., Acinetobacter johnsonii sp. nov., and Acinetobacter junii sp. nov. and emended descriptions of Acinetobacter calcoaceticus and Acinetobacter lwoffii. Int J Syst Bacteriol 1986 ; 36 : 228-40.
4. NEMEC A, DIJKSHOORN L, CLEENWERCK I et al. Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens. Int J Syst Evol Microbiol 2003 ; 53 : 1563-7.
5. BOUVET PJ, GRIMONT PA. Identification and biotyping of clinical isolates of Acinetobacter. Ann Inst Pasteur Microbiol 1987 ; 138 : 569-78.
6. GERNER-SMIDT P, TJERNBERG I, URSING J. Reliability of phenotypic tests for identification of Acinetobacter species. J Clin Microbiol 1991 ; 29 : 277-82.
7. BERNARDS AT, VAN DER TJ, VAN BOVEN CP et al. Evaluation of the ability of a commercial system to identify Acinetobacter genomic species. Eur J Clin Microbiol Infect Dis 1996 ; 15 : 303-8.
8. EHRENSTEIN B, BERNARDS AT, DIJKSHOORN L et al. Acinetobacter species identification by using tRNA spacer fingerprinting. J Clin Microbiol 1996 ; 34 : 2414-20.
9. VANEECHOUTTE M, DIJKSHOORN L, TJERNBERG I et al. Identification of Acinetobacter genomic species by amplified ribosomal DNA restriction analysis. J Clin Microbiol 1995 ; 33 : 11-5.
10. DIJKSHOORN L, VAN HARSSELAAR B, TJERNBERG I et al. Evaluation of amplified ribosomal DNA restriction analysis for identification of Acinetobacter genomic species. Syst Appl Microbiol 1998 ; 21 : 33-9.
11. JANSSEN P, COOPMAN R, HUYS G et al. Evaluation of the DNA fingerprinting method AFLP as an new tool in bacterial taxonomy. Microbiology 1996 ; 142 : 1881-93.
12. NEMEC A, DIJKSHOORN L, JEZEK P. Recognition of two novel phenons of the genus Acinetobacter among non-glucose-acidifying isolates from human specimens. J Clin Microbiol 2000 ; 38 : 3937-41.
13. NEMEC A, DE BAERE T, TJERNBERG I et al. Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens. Int J Syst Evol Microbiol 2001 ; 51 : 1891-9.
14. BERGOGNE-BEREZIN E, TOWNER KJ. Acinetobacter spp. as nosocomial pathogens: microbiological, clinical, and epidemiological features. Clin Microbiol Rev 1996 ; 9 : 148-65.
15. SEIFERT H, STRATE A, SCHULZE A et al. Vascular catheter-related bloodstream infection due to Acinetobacter johnsonii (formerly Acinetobacter calcoaceticus var. lwoffi): report of 13 cases. Clin Infect Dis 1993 ; 17 : 632-6.
16. BERNARDS AT, DE BEAUFORT AJ, DIJKSHOORN L et al. Outbreak of septicaemia in neonates caused by Acinetobacter junii investigated by amplified ribosomal DNA restriction analysis (ARDRA) and four typing methods. J Hosp Infect 1997 ; 35 : 129-40.
17. VAN DESSEL H, DIJKSHOORN L, VAN DER REIJDEN T et al. Identification of a new geographically widespread multiresistant Acinetobacter baumannii clone from European hospitals. Res Microbiol 2004 ; 155 : 105-12.
18. DIJKSHOORN L, AUCKEN H, GERNER-SMIDT P et al. Comparison of outbreak and nonoutbreak Acinetobacter baumannii strains by genotypic and phenotypic methods. J Clin Microbiol 1996 ; 34 : 1519-25.
19. NEMEC A, DIJKSHOORN L, VAN DER REIJDEN TJ. Long-term predominance of two pan-European clones among multi-resistant Acinetobacter baumannii strains in the Czech Republic. J Med Microbiol 2004 ; 53 : 147-53.
20. TURTON JF, KAUFMANN ME, WARNER M et al. A prevalent, multiresistant clone of Acinetobacter baumannii in Southeast England. J Hosp Infect 2004 ; 58 : 170-9.
21. OLIVE DM, BEAN P. Principles and applications of methods for DNA-based typing of microbial organisms. J Clin Microbiol 1999 ; 37 : 1661-9.
22. JOLY-GUILLOU ML, BERGOGNE-BEREZIN E, VIEU JF. A study of the relationships between antibiotic resistance phenotypes, phage-typing and biotyping of 117 clinical isolates of Acinetobacter spp. J Hosp Infect 1990 ; 16 : 49-58.
23. BOUVET PJ, JEANJEAN S, VIEU JF et al. Species, biotype, and bacteriophage type determinations compared with cell envelope protein profiles for typing Acinetobacter strains. J Clin Microbiol, 1990 ; 28 : 170-6.
24. GIAMMANCO A, VIEU JF, BOUVET PJ et al. A comparative assay of epidemiological markers for Acinetobacter strains isolated in a hospital. Zentralbl Bakteriol 1989 ; 272 : 231-41.
25. TRAUB WH. Examination of polyclonal rabbit immune sera against serovars of Acinetobacter baumannii and genospecies 3 for cross-reactions with reference strains of other named/unnamed genospecies of Acinetobacter. Zentralbl Bakteriol 2000 ; 289 : 787-95.
26. GONCALVES CR, VAZ TM, ARAUJO E et al. Biotyping, serotyping and ribotyping as epidemiological tools in the evaluation of Acinetobacter baumannii dissemination in hospital units, Sorocaba, Sao Paulo, Brazil. Rev Inst Med Trop Sao Paulo 2000 ; 42 : 277-82.
27. PANTOPHLET R, NEMEC A, BRADE L et al. O-antigen diversity among Acinetobacter baumannii strains from the Czech Republic and Northwestern Europe, as determined by lipopolysaccharide-specific monoclonal antibodies. J Clin Microbiol 2001 ; 39 : 2576-80.
28. GERNER-SMIDT P, TJERNBERG I. Acinetobacter in Denmark: II. Molecular studies of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex. APMIS, 1993 ; 101 : 826-32.
29. TOWNER KJ, CHOPADE BA. Biotyping of Acinetobacter calcoaceticus using the API 2ONE system. J Hosp Infect 1987 ; 10 : 145-51.
30. VAN DESSEL H, KAMP-H TE, FLUIT AC et al. Outbreak of a susceptible strain of Acinetobacter species 13 (sensu Tjernberg and Ursing) in an adult neurosurgical intensive care unit. J Hosp Infect 2002 ; 51 : 89-95.
31. NEMEC A, DOLZANI L, BRISSE S et al. Diversity of aminoglycoside- resistance genes and their association with class 1 integrons among strains of pan-European Acinetobacter baumannii clones. J Med Microbiol 2004 ; 53 : 1233-40.
32. WEERNINK A, SEVERIN WP, TJERNBERG I et al. Pillows, an unexpected source of Acinetobacter. J Hosp Infect 1995 ; 29 : 189-99.
33. DIJKSHOORN L, VAN VIANEN W, DEGENER JE et al. Typing of Acinetobacter calcoaceticus strains isolated from hospital patients by cell envelope protein profiles. Epidemiol Infect 1987 ; 99 : 659-67.
34. DIJKSHOORN L, TJERNBERG I, POT B et al. Numerical analysis of cell envelope protein profiles of Acinetobacter strains classified by DNA-DNA hybridization. Syst Appl Microbiol, 1990 ; 13 : 338-4.
35. GERNER-SMIDT P. Frequency of plasmids in strains of Acinetobacter calcoaceticus. J Hosp Infect 1989 ; 14 : 23-8.
36. SEIFERT H, SCHULZE A, BAGINSKI R et al. Plasmid DNA fingerprinting of Acinetobacter species other than Acinetobacter baumannii. J Clin Microbiol 1994 ; 32 : 82-6.
37. SEIFERT H, SCHULZE A, BAGINSKI R et al. Comparison of four different methods for epidemiologic typing of Acinetobacter baumannii. J Clin Microbiol 1994 ; 32 : 1816-9.
38. NEMEC A, JANDA L, MELTER O et al. Genotypic and phenotypic similarity of multiresistant Acinetobacter baumannii isolates in the Czech Republic. J Med Microbiol 1999 ; 48 : 287-96.
39. GERNER-SMIDT P. Ribotyping of the Acinetobacter calcoaceticus- Acinetobacter baumannii complex. J Clin Microbiol 1992 ; 30 : 2680-5.
40. SEIFERT H, GERNER-SMIDT P. Comparison of ribotyping and pulsed-field gel electrophoresis for molecular typing of Acinetobacter isolates. J Clin Microbiol 1995 ; 33 : 1402-7.
41. BRISSE S, MILATOVIC D, FLUIT AC et al. Molecular surveillance of European quinolone-resistant clinical isolates of Pseudomonas aeruginosa and Acinetobacter spp. using automated ribotyping. J Clin Microbiol 2000 ; 38 : 3636-45.
42. VANEECHOUTTE M, ELAICHOUNI A, MAQUELIN K et al. Comparison of arbitrarily primed polymerase chain reaction and cell envelope protein electrophoresis for analysis of Acinetobacter baumannii and A. junii outbreaks. Res Microbiol 1995 ; 146 : 457-65.
43. GRUNDMANN HJ, TOWNER KJ, DIJKSHOORN L et al. Multicenter study using standardized protocols and reagents for evaluation of reproducibility of PCR-based fingerprinting of Acinetobacter spp. J Clin Microbiol 1997 ; 35 : 3071-7.
44. VILA J, MARCOS MA, JIMENEZ DE ANTA MT. A comparative study of different PCR-based DNA fingerprinting techniques for typing of the Acinetobacter calcoaceticus-A. baumannii complex. J Med Microbiol 1996 ; 44 : 482-9.
45. HUYS G, CNOCKAERT M, NEMEC A et al. Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multiresistant Acinetobacter baumannii clone III strains. J Med Microbiol 2005 ; 54 : 851-6.
46. ALLARDET-SERVENT A, BOUZIGES N, CARLES-NURIT MJ et al. Use of low-frequency-cleavage restriction endonucleases for DNA analysis in epidemiological investigations of nosocomial bacterial infections. J Clin Microbiol 1989 ; 27 : 2057-61.
47. GOUBY A, CARLES-NURIT MJ, BOUZIGES N et al. Use of pulsed-field gel electrophoresis for investigation of hospital outbreaks of Acinetobacter baumannii. J Clin Microbiol 1992 ; 30 : 1588-91.
48. LIU PY, WU WL. Use of different PCR-based DNA fingerprinting techniques and pulsed-field gel electrophoresis to investigate the epidemiology of Acinetobacter calcoaceticus-Acinetobacter baumannii complex. Diagn Microbiol Infect Dis, 1997 ; 29 : 19-28.
49. SEIFERT H, DOLZANI L, BRESSAN R et al. Standardization and interlaboratory reproducibility assessment of pulsed-field gel electrophoresis-generated fingerprints of Acinetobacter baumannii. J Clin Microbiol 2005 ; 43 : 4328-35.
50. JANSSEN P, DIJKSHOORN L. High resolution DNA fingerprinting of Acinetobacter outbreak strains. FEMS Microbiol Lett 1996 ; 142 : 191-4.
51. JANSSEN P, MAQUELIN K, COOPMAN R et al. Discrimination of Acinetobacter genomic species by AFLP fingerprinting. Int J Syst Bacteriol 1997 ; 47 : 1179-87.
52. KOELEMAN JG, STOOF J, BIESMANS DJ et al. Comparison of amplified ribosomal DNA restriction analysis, random amplified polymorphic DNA analysis, and amplified fragment length polymorphism fingerprinting for identification of Acinetobacter genomic species and typing of Acinetobacter baumannii. J Clin Microbiol 1998 ; 36 : 2522-9.
53. WROBLEWSKA MM, DIJKSHOORN L, MARCHEL H et al. Outbreak of nosocomial meningitis caused by Acinetobacter baumannii in neurosurgical patients. J Hosp Infect 2004 ; 57 : 300-7.
54. BARTUAL SG, SEIFERT H, HIPPLER C et al. Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. J Clin Microbiol 2005 ; 43 : 4382-90.
55. HUYS G, CNOCKAERT M, NEMEC A et al. Sequence-Based Typing of adeB as a potential tool to identify intraspecific groups among clinical strains of multidrug-resistant Acinetobacter baumannii. J Clin Microbiol 2005 ; 43 : 5327-31.
56. FREEMAN R, SISSON PR, NOBLE WC et al. An apparent outbreak of infection with Acinetobacter calcoaceticus reconsidered after investigation by pyrolysis mass spectrometry. Zentralbl Bakteriol 1997 ; 285 : 234-44.
57. MAQUELIN K, DIJKSHOORN L, VAN DER REIJDEN TJ et al. Rapid epidemiological analysis of Acinetobacter strains by Raman spectroscopy. J Microbiol Methods 2006 ; 64 : 126-31.
58. TURTON JF, KAUFMANN ME, GLOVER J et al. Detection and typing of integrons in epidemic strains of Acinetobacter baumannii found in the United Kingdom. J Clin Microbiol 2005 ; 43 : 3074-82.