메뉴 건너뛰기




Volumn 135, Issue 1, 2006, Pages 76-82

Comparison between denaturing gradient gel electrophoresis and phylogenetic analysis for characterization of A/H3N2 influenza samples detected during the 1999-2004 epidemics in Brazil

Author keywords

DGGE; Haemagglutinin; Influenza A virus; Mutation detection

Indexed keywords

FORMAMIDE; POLYACRYLAMIDE GEL; UREA;

EID: 33646555456     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.02.003     Document Type: Article
Times cited : (6)

References (16)
  • 2
    • 0033539297 scopus 로고    scopus 로고
    • Influenza
    • Cox N.J., and Subbarao K. Influenza. Lancet 354 (1999) 1277-1282
    • (1999) Lancet , vol.354 , pp. 1277-1282
    • Cox, N.J.1    Subbarao, K.2
  • 3
    • 0028994297 scopus 로고
    • Genetic and antigenic variation in the haemagglutinin of recently circulating human influenza A (H3N2) viruses in the United Kingdom
    • Ellis J.S., Chakraverty P., and Clewley J.P. Genetic and antigenic variation in the haemagglutinin of recently circulating human influenza A (H3N2) viruses in the United Kingdom. Arch. Virol. 11 (1995) 1889-1904
    • (1995) Arch. Virol. , vol.11 , pp. 1889-1904
    • Ellis, J.S.1    Chakraverty, P.2    Clewley, J.P.3
  • 4
    • 0001430252 scopus 로고
    • DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory
    • Fisher S.G., and Lerman L.S. DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc. Natl. Acad. Sci. U.S.A. 80 (1983) 1579-1583
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 1579-1583
    • Fisher, S.G.1    Lerman, L.S.2
  • 5
    • 0034935639 scopus 로고    scopus 로고
    • Molecular evolution of influenza A/H3N2 viruses in the province of Quebec (Canada) during the 1997-2000 period
    • Hardy I., Li Y., Coulthart B., Goyette N., and Boivin G. Molecular evolution of influenza A/H3N2 viruses in the province of Quebec (Canada) during the 1997-2000 period. Vir. Res. 77 (2001) 89-96
    • (2001) Vir. Res. , vol.77 , pp. 89-96
    • Hardy, I.1    Li, Y.2    Coulthart, B.3    Goyette, N.4    Boivin, G.5
  • 6
    • 0035175473 scopus 로고    scopus 로고
    • Diversity of hepatitis C virus quasispecies evaluated by denaturing gradient gel electrophoresis
    • Harris K.A., and Teo C.G. Diversity of hepatitis C virus quasispecies evaluated by denaturing gradient gel electrophoresis. Clin. Diag. Lab. Immunol. 8 (2001) 62-73
    • (2001) Clin. Diag. Lab. Immunol. , vol.8 , pp. 62-73
    • Harris, K.A.1    Teo, C.G.2
  • 7
    • 0037135669 scopus 로고    scopus 로고
    • Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control
    • Hilleman M.R. Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control. Vaccine 20 (2002) 3068-3087
    • (2002) Vaccine , vol.20 , pp. 3068-3087
    • Hilleman, M.R.1
  • 8
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 12 (2001) 1244-1245
    • (2001) Bioinformatics , vol.12 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 9
    • 0036176475 scopus 로고    scopus 로고
    • Standardization of denaturing gradient gel electrophoresis for mutant screening of influenza A (H3N2) virus samples
    • Motta F.C., Rosado A.S., and Couceiro J.N.S.S. Standardization of denaturing gradient gel electrophoresis for mutant screening of influenza A (H3N2) virus samples. J. Virol. Meth. 105 (2002) 105-115
    • (2002) J. Virol. Meth. , vol.105 , pp. 105-115
    • Motta, F.C.1    Rosado, A.S.2    Couceiro, J.N.S.S.3
  • 10
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Anton. van Leeuw. 73 (1998) 127-141
    • (1998) Anton. van Leeuw. , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 11
    • 0034753058 scopus 로고    scopus 로고
    • Molecular and phylogenetic analysis of haemagglutinin and neuraminidase sequences from recent human influenza type A (H3N2) viral isolates in southern Greece
    • Plakokefalos E.T., Markoulatos P., Spyrou N., Bei T.A., and Vamvakopulos N.C. Molecular and phylogenetic analysis of haemagglutinin and neuraminidase sequences from recent human influenza type A (H3N2) viral isolates in southern Greece. Arch. Virol. 146 (2001) 1899-1918
    • (2001) Arch. Virol. , vol.146 , pp. 1899-1918
    • Plakokefalos, E.T.1    Markoulatos, P.2    Spyrou, N.3    Bei, T.A.4    Vamvakopulos, N.C.5
  • 12
    • 0000023099 scopus 로고
    • Attachment of a 40-base-pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results improved detection of single-base changes
    • Sheffield V.C., Cox D.R., Lerman L., and Myers R.M. Attachment of a 40-base-pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results improved detection of single-base changes. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 232-236
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Cox, D.R.2    Lerman, L.3    Myers, R.M.4
  • 13
    • 0019500784 scopus 로고
    • Antigenic drift in the hemagglutinin of the Hong Kong influenza subtype: correlations of amino acid changes with the alterations in viral antigenicity
    • Sleigh M.J., Both G.W., Underwood A., and Bender V.J. Antigenic drift in the hemagglutinin of the Hong Kong influenza subtype: correlations of amino acid changes with the alterations in viral antigenicity. J. Virol. 37 (1981) 845-853
    • (1981) J. Virol. , vol.37 , pp. 845-853
    • Sleigh, M.J.1    Both, G.W.2    Underwood, A.3    Bender, V.J.4
  • 14
    • 0031684905 scopus 로고    scopus 로고
    • Multiplex PCR for typing and subtyping influenza and respiratory syncitial viruses
    • Stockton J., Ellis J.S., Saville M., Clewley J.P., and Zambom M.C. Multiplex PCR for typing and subtyping influenza and respiratory syncitial viruses. J. Clin. Microbiol. 36 (1998) 2990-2995
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 2990-2995
    • Stockton, J.1    Ellis, J.S.2    Saville, M.3    Clewley, J.P.4    Zambom, M.C.5
  • 15
    • 0037095589 scopus 로고    scopus 로고
    • The importance of animal influenza for human disease
    • Webster R.G. The importance of animal influenza for human disease. Vaccine 20 (2002) S16-S20
    • (2002) Vaccine , vol.20
    • Webster, R.G.1
  • 16
    • 0032404138 scopus 로고    scopus 로고
    • Improvement of fragment and primer selection for mutant detection by denaturing gradient gel electrophoresis
    • Wu Y., Hayes V.M., Osinga J., Mulder I.M., Looman M.W.G., Buys C.H.C.M., and Hofstra R.M.W. Improvement of fragment and primer selection for mutant detection by denaturing gradient gel electrophoresis. Nucl. Acid Res. 26 (1998) 5432-5440
    • (1998) Nucl. Acid Res. , vol.26 , pp. 5432-5440
    • Wu, Y.1    Hayes, V.M.2    Osinga, J.3    Mulder, I.M.4    Looman, M.W.G.5    Buys, C.H.C.M.6    Hofstra, R.M.W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.