Localization of the Escherichia coli RNA polymerase β′ subunit residue phosphorylated by bacteriophage T7 kinase Gp0.7

Journal of Bacteriology

Volumn 188, Issue 10, 2006, Pages 3470-3476

  Severinova, Elena ^a   Severinov, Konstantin ^a,b,c  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; PROTEIN KINASE; RNA POLYMERASE BETA SUBUNIT;

ARTICLE; BACTERIOPHAGE T7; ENZYME LOCALIZATION; ENZYME SUBUNIT; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; NONHUMAN; PLASMID; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION;

AMINO ACID SEQUENCE; BACTERIOPHAGE T7; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PHOSPHORYLATION; PROTEIN SUBUNITS; PROTEIN-SERINE-THREONINE KINASES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

ESCHERICHIA COLI;

EID: 33646545351     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.10.3470-3476.2006     Document Type: Article

References (48)

1. Allison, L. A., M. Moyle, M. Shales, and C. J. Ingles. 1985. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases. Cell 42:599-610.
2. Amemiya, K., and L. Shapiro. 1982. In vitro transcription of the early region of Caulobacter phage phi Cd1 deoxyribonucleic acid by host RNA polymerase. Biochemistry 21:4707-4713.
3. Bae, W., B. Xia, M. Inouye, and K. Severinov. 2000. Escherichia coli CspA-family RNA chaperones are transcription antiterminators. Proc. Natl. Acad. Sci. USA 97:7784-7789.
4. Bell, G. I., P. Valenzuela, and W. J. Rutter. 1977. Phosphorylation of yeast DNA-dependent RNA polymerases in vivo and in vitro. Isolation of enzymes and identification of phosphorylated subunits. J. Biol. Chem. 252:3082-3091,
5. Borukhov, S., J. Lee, and A. Goldfarb. 1991. Mapping of a contact for the RNA 3′ terminus in the largest subunit of RNA polymerase. J. Biol. Chem. 266:23932-23935.
6. Boyle, W. J., P. van der Geer, and T. Hunter. 1991. Phosphopeptide mapping and phosphoamino acid analysis by two-dimensional separation on thin-layer cellulose plates. Methods Enzymol. 201:110-149.
7. 6a. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
8. Breant, B., J. M. Buhler, A. Sentenac, and P. Fromageot. 1983. On the phosphorylation of yeast RNA polymerases A and B. Eur. J. Biochem. 130:247-251.
9. Buchstein, S., and D. C. Hinkle. 1982. Genetic analysis of two bacterial RNA polymerase mutants that inhibit the growth of bacteriophage T7. Mol. Gen. Genet. 188:211-218.
10. Chlenov, M., S. Masuda, K. S. Murakami, V. Nikiforov, S. A. Darst, and A. Mustaev. 2005. Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta′ subunit. J. Mol. Biol. 353:138-154.
11. Christie, G. E., S. B. Cale, L. A. Isaksson, D. J. Jin, M. Xu, B. Sauer, and R. Calendar. 1996. Escherichia coli rpoC397 encodes a temperature-sensitive C-terminal frameshift in the β′ subunit of RNA polymerase that blocks growth of bacteriophage P2. J. Bacteriol. 178:6991-6993.
12. DeWyngaert, M. A., and D. C. Hinkle. 1979. Bacterial mutants affecting phage T7 DNA replication produce RNA polymerase resistant to inhibition by the T7 gene 2 protein. J. Biol. Chem. 254:11247-11253.
13. Ederth, J., L. A. Isaksson, and F. Abdulkarim. 2002. Origin-specific reduction of ColE1 plasmid copy number due to mutations in a distinct region of the Escherichia coli RNA polymerase. Mol. Genet. Genomics 267:587-592.
14. Ellerbroek, S. M., K. Wennerberg, and K. Burridge. 2003. Serine phosphorylation negatively regulates RhoA in vivo. J. Biol. Chem. 278:19023-19031.
15. Fath, S., P. Milkereit, G. Peyroche, M. Riva, C. Carles, and H. Tschochner. 2001. Differential roles of phosphorylation in the formation of transcriptional active RNA polymerase I. Proc. Natl. Acad. Sci. USA 98:14334-14339.
16. Gadaleta, P., and J. Zorzopulos. 1997. Kluyvera bacteriophage Kvp1: a new member of the Podoviridae family phylogenetically related to the coliphage T7. Virus Res. 51:43-52.
17. Gomez, B., and L. Nualart. 1977. Requirement of the bacteriophage T7 0.7 gene for phage growth in the presence of the Col 1b factor. J. Gen. Virol. 35:99-106.
18. Hager, D. A., D. J. Jin, and R. R. Burgess. 1990. Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase. Biochemistry 29:7890-7894.
19. Hesselbach, B. A., and D. Nakada. 1977. "Host shutoff" function of bacteriophage T7: involvement of T7 gene 2 and gene 0.7 in the inactivation of Escherichia coli RNA polymerase. J. Virol. 24:736-745.
20. Hirsch-Kauffmann, M., P. Herrlich, H. Ponta, and M. Schweiger. 1975. Helper function of T7 protein kinase in virus propagation. Nature 255:508-510.
21. Hodgson, D., L. Shapiro, and K. Amemiya. 1985. Phosphorylation of the β′ subunit of RNA polymerase and other host proteins upon φCD1 infection of Caulobacter crescentus. J. Virol. 55:238-241.
22. Landick, R., J. Stewart, and D. N. Lee. 1990. Amino acid changes in conserved regions of the beta-subunit of Escherichia coli RNA polymerase alter transcription pausing and termination. Genes Dev. 4:1623-1636.
23. Lau, L. F., J. W. Roberts, and R. Wu. 1983. RNA polymerase pausing and transcript release at the lambda tR1 terminator in vitro. J. Biol. Chem. 258:9391-9397.
24. Marchand, I., A. W. Nicholson, and M. Dreyfus. 2001. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase. Mol. Microbiol. 42:767-776.
25. Mayer, J. E., and M. Schweiger. 1983. RNase III is positively regulated by T7 protein kinase. J. Biol. Chem. 258:5340-5343.
26. Mertens, H., and R. Hausmann. 1982. Coliphage BA14: a new relative of phage T7. J. Gen. Virol. 62:331-341.
27. Mooney, P. Q., R. North, and I. J. Molineux. 1980. The role of bacteriophage T7 gene 2 protein in DNA replication. Nucleic Acids Res. 8:3043-3053.
28. Mustaev, A., E. Zaychikov, M. Grachev, M. Kozlov, K. Severinov, V. Epshtein, N. Korzheva, O. Bereshchenko, V. Markovtsov, V. Lukhtanov, I. Tsarev, T. Maximova, M. Kashlev, I. Bass, V. Nikiforov, and A. Goldfarb. 2003. Studies of methods of cross-linking of RNA polymerase active center. Methods Enzymol. 371:191-206.
29. Nechaev, S., and K. Severinov. 1999. Inhibition of E. coli RNA polymerase by bacteriophage T7 gene 2 protein. J. Mol. Biol. 289:815-826.
30. Nechaev, S., and K. Severinov. 2003. Bacteriophage-induced modifications of host RNA polymerase. Annu. Rev. Microbiol. 57:301-322.
31. Nedea, E. C., D. Markov, T. Naryshkina, and K. Severinov. 1999. Localization of Escherichia coli rpoC mutations that affect RNA polymerase assembly and activity at high temperature. J. Bacteriol. 181:2663-2665.
32. Pai, S. H., H. J. Rahmsdorf, H. Ponta, M. Hirsch-Kauffmann, P. Herrlich, and M. Schweiger. 1975. Protein kinase of bacteriophage T7. 2. Properties, enzyme synthesis in vitro and regulation of enzyme synthesis and activity in vivo. Eur. J. Biochem. 55:305-314.
33. Pajunen, M. I., S. J. Kiljunen, M. E.-L. Söderholm, and M. Skurnik. 2001. Complete genomic sequence of the lytic bacteriophage φYeO3-12 of Yersinia enterocolitica serotype O:3. J. Bacteriol. 183:1928-1937.
34. Pfennig-Yeh, M. L., H. Ponta, M. Hirsch-Kauffmann, H. J. Rahmsdorf, P. Herrlich, and M. Schweiger. 1978. Early T7 gene expression: rates of RNA synthesis and degradation, protein kinase dependent termination of transcription, and efficiency of translation. Mol. Gen. Genet. 166:127-140.
35. Ponta, H., H. J. Rahmsdorf, S. H. Pai, M. Hirsch-Kauffmann, P. Herrlich, and M. Schweiger. 1974. Control of gene expression in bacteriophage T7: transcriptional controls. Mol. Gen. Genet. 134:281-297.
36. Ponta, H., H. J. Rahmsdorf, S. H. Pai, P. Herrlich, and M. Schweiger. 1974. Control of gene expression in bacteriophage T7. Isolation of a new control protein and mechanism of action. Mol. Gen. Genet. 134:29-38.
37. Rahmsdorf, H. J., S. H. Pai, H. Ponta, P. Herrlich, R. Roskoski, Jr., M. Schweiger, and F. W. Studier. 1974. Protein kinase induction in Escherichia coli by bacteriophage T7. Proc. Natl. Acad. Sci. USA 71:586-589.
38. Robertson, E. S., and A. W. Nicholson. 1990. Protein kinase of bacteriophage T7 induces the phosphorylation of only a small number of proteins in the infected cell. Virology 175:525-534.
39. Robertson, E. S., L. A. Aggison, and A. W. Nicholson. 1994. Phosphorylation of elongation factor G and ribosomal protein S6 in bacteriophage T7-infected Escherichia coli. Mol. Microbiol. 11:1045-1057.
40. Rothman-Denes, L. B., S. Muthukrishan, R. Haselkorn, and F. W. Studier. 1973. A T7 gene function required for shutoff of host and early T7 transcription, p. 227-239. In C. F. Fox and W. S. Robinson (ed.), Virus research. Academic Press, New York, N.Y.
41. Studier, F. W. 1973. Genetic analysis of non-essential bacteriophage T7 genes. J. Mol. Biol. 79:227-236.
42. Studier, F. W., and N. R. Movva. 1976. SAMase gene of bacteriophage T3 is responsible for overcoming host restriction. J. Virol. 19:136-145.
43. Thompson, N. E., D. A. Hager, and R. R. Burgess. 1992. Isolation and characterization of a polyol-responsive monoclonal antibody useful for gentle purification of Escherichia coli RNA polymerase. Biochemistry 31:7003-7008.
44. Weilbaecher, R., C. Hebron, G. Feng, and R. Landick. 1994. Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation. Genes Dev. 8:2913-2927.
45. West, D., C. Lagenaur, and N. Agabian. 1976. Isolation and characterization of Caulobacter crescentus bacteriophage φCd1. J. Virol. 17:568-575.
46. Yamada, Y., J. Silnutzer, and D. Nakada. 1978. Mutant of Escherichia coli which blocks T7 bacteriophage assembly: accumulation of short T7 DNA. J. Mol. Biol. 121:95-111.
47. Zakharova, N., I. A. Bass, E. Arsenieva, V. Nikiforov, and K. Severinov. 1998. Mutations in and monoclonal antibody binding to evolutionary hypervariable region of E. coli RNA polymerase b′ subunit inhibit transcript cleavage and transcript elongation. J. Biol. Chem. 273:19371-19374.
48. Zillig, W., H. Fujiki, W. Blum, D. Janekovic, M. Schweiger, H. J. Rahmsdorf, H. Ponta, and M. Hirsch-Kauffmann. 1975. In vivo and in vitro phosphorylation of DNA-dependent RNA polymerase of Escherichia coli by bacteriophage-T7-induced protein kinase. Proc. Natl. Acad. Sci. USA 7:2506-2510.