Using a standard framework for the phenotypic analysis of Medicago truncatula: An effective method for characterizing the plant material used for functional genomics approaches

Plant, Cell and Environment

Volumn 29, Issue 6, 2006, Pages 1087-1098

  Moreau, Delphine ^a   Salon, Christophe ^a   Munier Jolain, Nathalie ^a  

^a CEMAGREF   (France)

Author keywords

Developmental stage; Ecophysiology; Modelling; Phenotypic characterization; Phenotypic variability; Terminology; Thermal time; Vegetative development

Indexed keywords

DEVELOPMENTAL STAGE; ENVIRONMENTAL CONDITIONS; GENE; GENOMICS; LEGUME; NITROGEN FIXATION; TEMPERATURE EFFECT;

ALLELE; ARTICLE; BARREL MEDIC; CLASSIFICATION; GENETICS; GENOMICS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; METHODOLOGY; MUTATION; NOMENCLATURE; PHENOTYPE; PLANT LEAF; TEMPERATURE;

ALLELES; CLASSIFICATION; GENOMICS; MEDICAGO TRUNCATULA; MUTATION; PHENOTYPE; PLANT LEAVES; TEMPERATURE; TERMINOLOGY; TERMINOLOGY AS TOPIC;

MEDICAGO TRUNCATULA;

EID: 33646543031     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2005.01483.x     Document Type: Article

References (49)

1. Aitken Y 1955 Flower initiation in pasture legumes. III. Flower initiation in Medicago tribuloides Desr. & other annual medics Australian Journal of Agricultural Research 6 258 264
2. Allemeersch J Durinck S Vanderhaeghen R et al. 2005 ) Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis Plant Physiology 137 588 601
3. Benlloch R Navarro C Beltrán JP Cañas LA 2003 Floral development of the model legume Medicago truncatula: ontogeny studies as a tool to better characterise homeotic mutations Sexual Plant Reproduction 15 231 241
4. Blondon F Marie D Brown S Kondorosi A 1994 Genome size and base composition in Medicago sativa and M. truncatula species Genome 37 264 270
5. Bonhomme R 2000 Bases and limits to using 'degree-day' units European Journal of Agronomy 13 1 10
6. Bouché N Bouchez D 2001 Arabidopsis gene knockout: phenotypes wanted Current Opinion in Plant Biology 4 111 117
7. Bouchez D Höfte H 1998 Functional genomics in plants Plant Physiology 118 725 732
8. Boyes CD Zayed AM Ascenzi R McCaskill AJ Hoffman NE Davis KR Görlach J 2001 Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants Plant Cell 13 1499 1510
9. Buchanan-Wollaston V Page T et al. 2005 Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis Plant Journal 42 567 585
10. Clapham WM Fedders JM 2003 Modeling vegetative development of berseem clover (Trifolium alexandrinum L.) as a function of growing degree days using linear regression and neural networks Canadian Journal of Plant Science 84 511 517
11. Clarkson NM Russell JS 1975 Flowering response to vernalization and photoperiod in annual medics (Medicago spp.) Australian Journal of Agricultural Research 26 831 838
12. Clarkson NM Russell JS 1976 Effect of water stress on the phasic development of annual Medicago species Australian Journal of Agricultural Research 27 227 234
13. Clarkson NM Russell JS 1979 Effect of temperature on the development of two annual medics Australian Journal of Agricultural Research 30 909 916
14. Cook DR 1999 Medicago truncatula- a model in the making! Current Opinion in Plant Biology 2 301 304
15. Dieterle M Thomann A Renou JP Parmentier Y Cognat V Lemonnier G Muller R Shen WH Kretsch T Genschik P 2005 Molecular and functional characterization of Arabidopsis Cullin 3A Plant Journal 41 386 399
16. van Dijken AJH Schluepmann H Smeekens SCM 2004 Arabidopsis trehalose-6-phosphate synthase 1 is essential for normal vegetative growth and transition to flowering Plant Physiology 135 969 977
17. Dosio GAA Rey H Lecoeur J Izquierdo NG Aguirrezábal LAN Tardieu F Turc O 2003 A whole-plant analysis of the dynamics of expansion of individual leaves of two sunflower hybrids Journal of Experimental Botany 54 2541 2552
18. Fehr WR Caviness CE Burmood DT Pennington JS 1971 Stage of development descriptions for soybeans, Glycine max (L.) Merrill Crop Science 11 929 931
19. Frugoli J Harris J 2001 Medicago truncatula on the move! Plant Cell 13 458 462
20. Granier C Tardieu F 1999 Water deficit and spatial pattern of leaf development. Variability in responses can be simulated using a simple model of leaf development Plant Physiology 119 609 619
21. Granier C Massonnet C Turc O Muller B Chenu K Tardieu F 2002 Individual leaf development in Arabidopsis thaliana: a stable thermal time-based programme Annals of Botany 89 595 604
22. Hammond JP Bennett MJ Bowen HC Broadley MR Eastwood DC May ST Rahn C Swarup R Woolaway KE White PJ 2003 Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants Plant Physiology 132 578 596
23. Hochman Z 1987 Quantifying vernalization and temperature promotion effects on time of flowering of three cultivars of Medicago truncatula Gaertn Australian Journal of Agricultural Research 38 279 286
24. Honys D Twell D 2003 Comparative analysis of the Arabidopsis pollen transcriptome Plant Physiology 132 640 652
25. Johnson C Boden E Arias J 2003 Salicylic acid and NPR1 induce the recruitment of trans-Activating TGA factors to a defense gene promoter in Arabidopsis Plant Cell 15 1846 1858
26. Keller M Karutz C Schmid JE Stamp P Winzeler M Keller B Messmer MM 1999 Quantitative trait loci for lodging resistance in a segregating wheat x spelt population Theoretical and Applied Genetics 98 1171 1182
27. Kiniry JR Rosenthal WD Jackson BS Hoogenboom G 1991 Predicting leaf development of crop plants In Predicting Crop Phenology (ed. Hodges T pp. 29 42 CRC Press Boca Raton, FL, USA
28. Knott CM 1987 A key for stages of development of the pea (Pisum sativum) Annals of Applied Biology 111 233 244
29. Knott CM 1990 A key for stages of development of the faba bean (Vicia faba) Annals of Applied Biology 116 391 404
30. Lancashire PD Bleiholder H van der Boom T Langeluddeke P Stauss R Weber E Witzenberger A 1991 A uniform decimal code for growth stages of crops and weeds Annals of Applied Biology 119 561 601
31. Lebon E Pellegrino A Tardieu F Lecoeur J 2004 Shoot development in grapevine (Vitis vinifera) is affected by the modular branching pattern of the stem and intra- and inter-shoot trophic competition Annals of Botany 93 263 274
32. Munier-Jolain NM Ney B Duthion C 1996 Analysis of branching in spring-sown white lupins (Lupinus albus L.): the significance of the number of axillary buds Annals of Botany 77 123 131
33. Nazoa P Vidmar JJ Tranbarger TJ Mouline K Damiani I Tillard P Zhuo D Glass ADM Touraine B 2003 Regulation of the nitrate transporter gene AtNRT2.1 in Arabidopsis thaliana: responses to nitrate, amino acids and developmental stage Plant Molecular Biology 52 689 703
34. Ndong C Danyluk J Huner NPA Sarhan F 2001 Survey of gene expression in winter rye during changes in growth temperature, irradiance or excitation pressure Plant Molecular Biology 45 691 703
35. Pic E Teyssendier de la Serve B Tardieu F Turc O 2002 Leaf senescence induced by mild water deficit follows the same sequence of macroscopic, biochemical, and molecular events as monocarpic senescence in pea Plant Physiology 128 236 246
36. Poethig RS 2003 Phase change and the regulation of developmental timing in plants Science 301 334 336
37. Quilot B Génard M Kervella J Lescourret F 2004 Analysis of genotypic variation in fruit flesh total sugar content via an ecophysiological model applied to peach Theoretical and Applied Genetics 109 440 449
38. Reymond M Muller B Leonardi A Charcosset A Tardieu F 2003 Combining quantitative trait loci analysis and an ecophysiological model to analyse the genetic variability of the responses of maize leaf growth to temperature and water deficit Plant Physiology 131 664 675
39. SAS Institute 1987 SAS/STAT, Guide for Personal Computer Version 6 ed. SAS Institute Cary, NC, USA
40. Schnabel E Journet EP Carvalho-Niebel F Duc G Frugoli J 2005 The Medicago truncatula SUNN gene encodes a CLV1-like leucine-rich repeat receptor kinase that regulates nodule number and root length Plant Molecular Biology 58 809 822
41. Scott IM Clarke SM Wood JE Mur LAJ 2004 Salicylate accumulation inhibits growth at chilling temperature in Arabidopsis Plant Physiology 135 1040 1049
42. Smith SM Fulton DC Chia T Thorneycroft D Chapple A Dunstan H Hylton C Zeeman SC Smith AM 2004 Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves Plant Physiology 136 2687 2699
43. Tardieu F 2003 Virtual plants: modelling as a tool for the genomics of tolerance to water deficit Trends in Plant Science 8 9 14
44. Truong HH Duthion C 1993 Time of flowering of pea (Pisum sativum L.) as function of leaf appearance rate and node of first flower Annals of Botany 72 133 142
45. Turc O Lecoeur J 1997 Leaf primordium initiation and expanded leaf production are co-ordinated through similar response to air temperature in pea (Pisum sativum L.) Annals of Botany 80 265 273
46. Ullah H Chen JG Temple B Boyes DC Alonso JM Davis KR Ecker JR Jones AM 2003 The β-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes Plant Cell 15 393 409
47. VandenBosch KA Stacey G 2003 Summaries of legume genomics projects from around the globe. Community resources for crops and models Plant Physiology 131 840 865
48. Zhu H Choi HK Cook DR Shoemaker RC 2005 Bridging model and crop legumes through comparative genomics Plant Physiology 137 1189 1196
49. Zimmermann P Hirsch-Hoffmann M Hennig L Gruissem W 2004 GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox Plant Physiology 136 2621 2632