Enzymatic and biochemical properties of a novel human serine dehydratase isoform

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1764, Issue 5, 2006, Pages 961-971

  Ogawa, Hirofumi ^a   Gomi, Tomoharu ^b   Nishizawa, Mikio ^c   Hayakawa, Yumiko ^b   Endo, Shunro ^b   Hayashi, Kyoko ^b   Ochiai, Hiroshi ^b   Takusagawa, Fusao ^d   Pitot, Henry C ^e   Mori, Hisashi ^a   Sakurai, Hiroaki ^b   Koizumi, Keiichi ^b   Saiki, Ikuo ^b   Oda, Hirofumi ^b   Fujishita, Takashi ^b   Miwa, Toshiro ^b   Maruyama, Muneharu ^b   Kobayashi, Masashi ^b  

^a TOYAMA MEDICAL AND PHARMACEUTICAL UNIVERSITY   (Japan)

^b UNIVERSITY OF TOYAMA   (Japan)

^c KANSAI MEDICAL UNIVERSITY   (Japan)

^d UNIVERSITY OF KANSAS   (United States)

^e UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Isoform; Recombinant protein; Serine dehydratase; Translational efficiency

Indexed keywords

COMPLEMENTARY DNA; ISOENZYME; LEUCINE; LIVER ENZYME; MESSENGER RNA; PROLINE; PYRIDOXAL 5 PHOSPHATE; RECOMBINANT ENZYME; SERINE DEHYDRATASE; THREONINE DEHYDRATASE; VALINE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME DEGRADATION; ENZYME KINETICS; ENZYME STRUCTURE; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; MICHAELIS CONSTANT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE; RNA TRANSLATION; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; ANIMALS; CELL LINE, TUMOR; CLONING, MOLECULAR; ESCHERICHIA COLI; HUMANS; ISOENZYMES; L-SERINE DEHYDRATASE; LUNG NEOPLASMS; MOLECULAR SEQUENCE DATA; RATS; RECOMBINANT PROTEINS;

ESCHERICHIA COLI;

EID: 33646504092     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2006.02.010     Document Type: Article

References (27)

1. Ogawa H. Structure and function relationships of serine dehydratases from various sources. Trends Comp. Biochem. Physiol. 6 (2000) 1-19
2. Gallagher D.T., Gilliland G.L., Xiao G., Zondlo J., Kisher K.E., Chinchilla D., and Eisenstein E. Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase. Structure 15 (1998) 465-475
3. Nakagawa H., and Kimura H. The properties of crystalline serine dehydratase of rat liver. J. Biochem. 66 (1969) 669-683
4. Inoue H., Kasper C., and Pitot H.C. Studies on the induction and repression of enzymes in rat liver: VI. Some properties and the metabolic regulation of two isozymic forms of serine dehydratase. J. Biol. Chem. 246 (1971) 2626-2632
5. Ogawa H., Gomi T., Takusagawa F., Masuda T., Goto T., Kan T., and Huh N.-H. Evidence for a dimeric structure of rat liver serine dehydratase. Int. J. Biochem. Cell Biol. 34 (2002) 533-543
6. Masuda T., Ogawa H., Matushima T., Kawamata S., Sasahara M., Kuroda K., Suzuki Y., Takata Y., Yamazaki M., Takusagawa F., and Pitot H.C. Localization and hormonal control of serine dehydratase during metabolic acidosis differ markedly from those of phosphoenolpyruvate carboxykinase in rat kidney. Int. J. Biochem. Cell Biochem. 35 (2003) 1234-1247
7. Yamada T., Komoto J., Takata Y., Ogawa H., Pitot H.C., and Takusagawa F. Crystal structure of serine dehydratase from rat liver. Biochemistry 42 (2003) 12854-12865
8. Sun L., Bartlam M., Liu Y., Pang H., and Rao Z. Crystal structure of the pyrodxal-5′-phosphate-dependent serine dehydratase from human liver. Protein Sci. 14 (2005) 791-798
9. Kashii T., Gomi T., Oya T., Ishii Y., Oda H., Maruyama M., Koabayashi M., Masuda T., Yamazaki M., Nagata T., Tsukada K., Nakajima A., Tatsu K., Mori H., Takusagawa F., and Ogawa H.H.C. Some biochemical and histochemical properties of human liver serine dehydratase, Pitot. Int. J. Biochem. Cell Biol. 37 (2005) 574-589
10. Kikuchi G. The glycine cleavage system. Comparison, reaction mechanism, and physiological significance. Mol. Cell. Biochem. 1 (1973) 179-203
11. Xue H.H., Fujie M., Sakgauchi T., Oda T., Ogawa H., Kneer N.M., Lardy H.A., and Ichiyama A. Flux of the l-serine metabolism in rat liver. The predominant contribution of serine dehydratase. J. Biol. Chem. 274 (1999) 16020-16027
12. Kitagawa T., and Pitot H.C. Immunohistochemical demonstration of serine dehydratase in rat liver. Am. J. Pathol. 78 (1975) 309-318
13. Ogawa H., and Kawamata S. Periportal expression of the serine dehydratase gene in rat liver. Histochem. J. 27 (1995) 380-387
14. Lopez-Flores I., Barroso J.B., Valderrama R., Esteba F.J., Martinez-Lara E., Luque F., Peinado M.A., Ogawa H., Lupianez J.A., and Peragon J. Serine dehydratase expression decreases in rat livers injured by chronic thioacetamide ingestion. Mol. Cell. Biochem. 268 (2005) 33-43
15. Xue H.H., Sakaguchi T., Fujie M., Ogawa H., and Ichiyama A. Flux of l-serine metabolism in rabbit, human, and dog livers: substantial contributions of both mitochondrial and peroxisomal serine pyruvate/alanine:glyoxylate aminotransferase. J. Biol. Chem. 274 (1999) 16028-16033
16. Chomczynski P., and Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162 (1987) 156-159
17. Ogawa H., Gomi T., Takata Y., Date T., and Fujioka M. Recombinant expression of rat glycine N-methyltransferase and evidence for contribution of N-terminal acetylation to co-operative binding of S-adenosylmethionine. Biochem. J. 327 (1997) 407-412
18. Ogawa H., Takusagawa F., Wakaki K., Kishi H., Eskandarian M.R., Kobayashi M., Date T., Huh N.-H., and Pitot H.C. Rat liver serine dehydratase: bacterial expression and two folding domains as revealed by limited proteolysis. J. Biol. Chem. 274 (1999) 12855-12860
19. Lowry O.H., Rosebrugh N.J., Farr A.L., and Randall R.J. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193 (1951) 265-275
20. Laemli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
21. Snell K. Enzymes of serine metabolism in normal, developing and neoplastic rat tissues. Adv. Enzyme Regul. 22 (1984) 325-400
22. Henaut A., and Danchin A. In: Neidhardt F., CurtissIII R., Ingraham J., Lin E., Low B., Magasanik B., Bezniloff W., Riley M., Schaechter M., and Umbarger H. (Eds). Escherichia coli and Salmonella typhimurium cellular and molecular biology vol. 2 (1996), American Society for Microbiology, Washington, DC 2047-2066
23. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
24. Edgar A.J. Mice have a transcribed l-threonine aldolase/GLY1 gene, but the human GLY1 gene is a non-processed pseudogene. BMC Genomics 6 (2005) 32
25. Ogawa H., Fujioka M., Date T., Mueckler M., Su Y., and Pitot H.C. Nutritional regulation and tissue-specific expression of the serine dehydratase gene in rat. J. Biol. Chem. 265 (1990) 14407-14413
26. Mato J.M., Corrales F.J., Lu S.C., and Avila M.A. S-Adenosylmethionine. A control switch that regulates liver function. FASEB J. 16 (2002) 15-26
27. Yang H., Sadda M.R., Yu V., Zeng Y., Lee T.D., Ou X., Chen L., and Lu S.C. Induction of human methionine adenosyltransferase 2A expression by tumor necrosis factor alpha. Role of NF-kappaB and AP-1. J. Biol. Chem. 278 (2003) 50887-50896