Genetic structure, habitat fragmentation and bottlenecks in Danish bank voles (Clethrionomys glareolus)

Mammalian Biology

Volumn 71, Issue 3, 2006, Pages 144-158

  Redeker, Sisse ^a   Andersen, Liselotte W ^a   Pertoldi, C ^a   Madsen, A B ^a   Jensen, T S ^a   Jorgensen J M ^a  

^a Department of Wildlife Ecology and Biodiversity National Environmental Research Institute ^*  (Denmark)

Author keywords

Clethrionomys glareolus; density fluctuation; habitat fragmentation; microsatellites

Indexed keywords

FOREST ECOSYSTEM; GENE FLOW; GENETIC STRUCTURE; HABITAT FRAGMENTATION; MAMMAL; SATELLITE;

DENMARK; EURASIA; EUROPE; JUTLAND; NORTHERN EUROPE; SCANDINAVIA;

CLETHRIONOMYS GLAREOLUS; MURIDAE;

EID: 33646479787     PISSN: 16165047     EISSN: 16181476     Source Type: Journal    
DOI: 10.1016/j.mambio.2005.12.003     Document Type: Article

References (60)

1. Aaris- Sørensen K. Danmarks forhistoriske dyreverden (1998), Gyldendal, Copenhagen
2. Aars J., Ims R.A., Liu H.P., Mulvey M., and Smith M.H. Bank vole in linear habitats show restricted gene flow as revealed by mitochondrial DNA (mtDNA). Mol. Ecol. 7 (1998) 1383-1389
3. Belkhir K., Castric V., and Bonhomme F. IDENTIX, a software to test for relatedness in a population using permutation methods. Mol. Ecol. Notes, 2 (2002) 611-614
4. Blouin M.S., Parsons M., Lacaille V., and Lotz S. Use of microsatellite loci to classify individuals by relatedness. Mol. Ecol. 5 (1996) 393-401
5. Borkowska A. Genetic and morphological variation among populations of the bank vole Clethrionomys glareolus from Northeastern Poland: the seasonal aspect. Z. Säugertierkd. 64 (1999) 285-297
6. Bright P.W. Habitat fragmentation-problems and predictions for British mammals. Mammal Rev. 23 (1993) 101-111
7. Burton C., Krebs C.J., and Taylor E.B. Population genetic structure of the cyclic snowshoe hare (Lepus americanus) in Southwestern Yukon. Canada. Mol. Ecol. 11 (2002) 1689-1701
8. Cavalli-Sforza L.L., and Edwards A.W.F. Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19 (1967) 233-257
9. Cornuet J.M., and Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144 (1996) 2001-2014
10. Dallas J.F., Bonhomme F., Boursot P., Britton-Davidian J., and Bauchaus V. Population genetic structure in a Robertsonian race of house mice: evidence from microsatellite polymorphism. Heredity 80 (1998) 70-77
11. Dallas J.F., Dod B., Boursot P., Prager E.M., and Bonhomme F. Population subdivision and gene flow in Danish house mice. Mol. Ecol. 4 (1995) 311-320
12. Dewsbury D., Baumgardner D.J., Sawrey D.K., and Webster D.G. The adaptive profile: comparative psychology of red-backed voles. J. Comp. Physiol. Psychol. 96 (1982) 649-660
13. Ehrich D., Jorde P.E., Krebs C.J., Kenney A.J., Stacy J.E., and Stenseth N.C. Spatial structure of lemming populations (Dicrostonyx groenlandicus) fluctuating in density. Mol. Ecol. 10 (2001) 481-495
14. Favre L., Balloux F., Goudet J., and Perrin N. Female-biased dispersal in the monogamous mammal Crocidura russula: evidence from field data and microsatellite patterns. Proc. R. Soc. London B, 264 (1997) 127-132
15. Garza J.C., and Williamson E.G. Detection of reduction in population size using data from microsatellite loci. Mol. Ecol. 10 (2001) 305-318
16. Gebczyński M., Nielsen J.T., and Simonsen V. An electrophoretic comparison between three sympatric species of rodents from Jutland, Denmark. Hereditas 104 (1986) 55-59
17. Gebczyński M., and Ratkiewicz M. Does biotope diversity promote an increase of genetic variation in the bank vole population?. Acta Theriol. 43 (1998) 163-173
18. Gerlach G., and Musolf K. Fragmentation of landscape as a cause for genetic subdivision in bank voles. Conserv. Biol. 14 (2000) 1066-1074
19. Gockel J., Harr B., Schlötterer C., Arnold W., Gerlach G., and Tautz D. Isolation and characterization of microsatellite loci from Apodemus flavicollis (rodentia, muridae) and Clethrionomys glareolus (rodentia, muridae). Mol. Ecol. 6 (1997) 597-599
20. Goudet J. FSTAT version 1.2. A computer program to calculate F-statistics. Heredity 86 (1995) 485-486
21. Goudet J., Raymond M., Demeeus T., and Rousset F. Testing differentiation in diploid populations. Genetics 144 (1996) 1933-1940
22. Hansson L., and Henttonen H. Rodent dynamics as community processes. Trends Ecol. Evol. 3 (1988) 195-200
23. Harr B., Musolf K., and Gerlach G. Characterization and isolation of DNA microsatellite primers in wood mice (Apodemus sylvaticus, Rodentia). Mol. Ecol. 9 (2000) 1661-1686
24. Hartl D., and Clark A.G. Principles of Population Genetics. 3rd ed (1997), Sinauer Associates Publishers, Inc, Sunderland, MA, USA
25. Ishibashi Y., Yoshinaga Y., Saitoh T., Abe S., Iida H., and Yoshida M.C. Polymorphic microsatellite DNA markers in the field vole Microtus montebelli. Mol. Ecol. 8 (1999) 157-168
26. Jensen T.S. Population estimations and population dynamics of two Danish forest rodent species. Vidensk. medd. Dansk Naturhist. For. 138 (1975) 65-86
27. Jensen T.S. Seed production and outbreaks of non-cyclic rodent populations in deciduous forests. Oecologia 54 (1982) 184-192
28. Jensen T.S. Habitat distribution, home range and movements of rodents in mature forest and reforestation. Acta Zool. Fenn. 171 (1984) 305-307
29. Kimura M., and Weiss G.H. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49 (1964) 561-576
30. Kyle C.J., and Strobeck C. Genetic structure of North American wolverine (Gulo gulo) populations. Mol. Ecol. 10 (2001) 337-347
31. Lande R. Risk of population extinction from fixation of new deleterious mutations. Evolution 48 (1994) 1460-1469
32. Luikart G., Allendorf F.W., Cornuet J.M., and Sherwin W.B. Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Hered. 89 (1998) 238-247
33. Mantel N. The detection of disease clustering as a generalized regression approach. Cancer Res. 27 (1967) 209-220
34. Maudet C., Bassano B., Breitenmoser-Würsten C., Gauthier D., Obexer-Ruff G., Michallet J., Taberlet P., and Luikart G. Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine ibex (Capra ibex (ibex)). Mol. Ecol. 11 (2002) 421-436
35. Milligan B.G. Total DNA isolation. In: Hoelzel A.R. (Ed). Molecular Genetic Analysis of Populations (1998), Oxford University Press, New York 59-88
36. Mitchell-Jones, A. J.; Amori, G.; Bogdanowicz, W.; Kristufek, B.; Reijnders, P. J. H.; Spitzenberger, F.; Stubbe, M.; Thissen, J. B. M.; Vohralik, V.; Zima, J. (eds.) (1999): The Atlas of European Mammals. London: Academic Press.
37. Mossman C.A., and Waser P.M. Effects of habitat fragmentation on population genetic structure in the white-footed mouse (Peromyscus leucopus). Can. J. Zool. 79 (2001) 285-295
38. Motro U., and Thomson G. On heterozygosity and the effective size of populations subject to size changes. Evolution 36 (1982) 1059-1066
39. Paetkau D., Calvert W., Stirling I., and Strobeck C. Microsatellite analysis of population structure in Canadian polar bears. Mol. Ecol. 4 (1995) 347-354
40. Paetkau D., Slade R., Burden M., and Estoup A. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol. Ecol. 13 (2004) 55-65
41. Paillat G., and Butet A. Spatial dynamics of the bank vole (Clethrionomys glareolus) in a fragmented landscape. Acta Ecol. 17 (1996) 553-559
42. Piry S., Luikart G., and Cornuet J.M. BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90 (1999) 502-503
43. Piry S., Alapetite A., Cornuet J.M., Paetkau D., Baudouin L., and Estoup A. GeneClass2: a software for genetic assignment and first generation migrants detection. J. Hered. 95 (2004) 536-539
44. Pritchard J., Stephens M., and Donnelly P. Inference of population structure using multilocus genotype data. Genetics 155 (2000) 945-959
45. Queller D.C., and Goodnight K.F. Estimating relatedness using genetic markers. Evolution 43 (1989) 258-275
46. Rannala B., and Mountain J.L. Detecting immigration by using multilocus genotypes. Proc. Natl. Acad. Sci. USA 94 (1997) 9197-9221
47. Raymond M., and Rousset F. An exact test for population differentiation. Evolution 49 (1995) 1280-1283
48. Reese C.L., Waters J.M., Pagels J.F., and Brown B.L. Genetic structuring of relict populations of Gapper's red-backed vole (Clethrionomys gapperi). J. Mammalogy 82 (2001) 289-301
49. Rice W.R. Analysing tables of statistical tests. Evolution 43 (1989) 223-225
50. Rousset F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145 (1997) 1219-1228
51. Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139 (1995) 457-462
52. Steen H., Ims R.A., and Sonerud G.A. Spatial and temporal patterns of small-rodent population dynamics at a regional scale. Ecology 77 (1996) 2365-2372
53. Stenseth N.C. Population cycles in voles and lemmings: density dependence and phase dependence in a stochastic world. Oikos 87 (1999) 427-461
54. Stenseth N.C., and Ims R.A. The Biology of Lemmings (1993), Academic Press, London
55. Van Apeldoorn R.C., Oostenbrink W.T., Van Winden A., and Van der Zee F.F. Effects of habitat fragmentation on the bank vole, Clethrionomys glareolus, in an agricultural landscape. Oikos 65 (1992) 265-274
56. Van de Zande L., Van Appeldoon R.C., Blijdenstein A.F., De Jong D., Van Delden W., and Bijlsma R. Microsatellite analysis of population structure and genetic differentiation within and between populations of the root vole, Microtus oeconomus in the Netherlands. Mol. Ecol. 9 (2000) 1651-1656
57. Wahlund S. Composition of populations from the perspective of the theory of heredity. Hereditas 11 (1928) 65-105
58. Weir B.S., and Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 38 (1984) 1358-1370
59. Yanes M., Velasco J.M., and Suarez F. Permeability of roads and railways to vertebrates-the importance of culverts. Biol. Conserv. 71 (1995) 217-222
60. Zejda J., and Pelikan J. Movements and home ranges of some rodents in lowland forests. Folia Zool. 18 (1969) 143-162