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Volumn 45, Issue 17, 2006, Pages 5517-5526

Structural features in EIAV NCp11: A lentivirus nucleocapsid protein with a short linker

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; RNA; SIMULATED ANNEALING; ZINC;

EID: 33646377434     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0524924     Document Type: Article
Times cited : (18)

References (52)
  • 1
    • 0022454530 scopus 로고
    • Pathogenesis of lentivirus infections
    • Haase, A. T. (1986) Pathogenesis of lentivirus infections, Nature (London) 322, 130-136.
    • (1986) Nature (London) , vol.322 , pp. 130-136
    • Haase, A.T.1
  • 2
    • 0029585377 scopus 로고
    • First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses
    • Darlix, J. L., Lapadat-Tapolsky, M., de Rocquigny, H., and Roques, B. P. (1995) First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses, J. Mol. Biol. 254, 523-537.
    • (1995) J. Mol. Biol. , vol.254 , pp. 523-537
    • Darlix, J.L.1    Lapadat-Tapolsky, M.2    De Rocquigny, H.3    Roques, B.P.4
  • 3
    • 0031464721 scopus 로고    scopus 로고
    • Structure, biological functions and inhibition of the HIV-1 proteins Vpr and NCp7
    • Roques, B. P., Morellet, N., de Rocquigny, H., Demene, H., Schueler, W., and Jullian, N. (1997) Structure, biological functions and inhibition of the HIV-1 proteins Vpr and NCp7, Biochimie 79, 673-680.
    • (1997) Biochimie , vol.79 , pp. 673-680
    • Roques, B.P.1    Morellet, N.2    De Rocquigny, H.3    Demene, H.4    Schueler, W.5    Jullian, N.6
  • 5
    • 0026042741 scopus 로고
    • Structural characterization of a 39-residue synthetic peptide containing the two zinc binding domains from the HIV-1 p7 nucleocapsid protein by CD and NMR spectroscopy
    • Omichinski, J. G., Clore, G. M., Sakaguchi, K., Appella, E., and Gronenborn, A. M. (1991) Structural characterization of a 39-residue synthetic peptide containing the two zinc binding domains from the HIV-1 p7 nucleocapsid protein by CD and NMR spectroscopy, FEBS Lett. 292, 25-30.
    • (1991) FEBS Lett. , vol.292 , pp. 25-30
    • Omichinski, J.G.1    Clore, G.M.2    Sakaguchi, K.3    Appella, E.4    Gronenborn, A.M.5
  • 8
    • 0032558965 scopus 로고    scopus 로고
    • High-resolution solution NMR structure of the minimal active domain of the human immunodeficiency virus type-2 nucleocapsid protein
    • Kodera Y., Sato K., Tsukahara T., Komatsu H., Maeda T., and Kohno T. (1998) High-resolution solution NMR structure of the minimal active domain of the human immunodeficiency virus type-2 nucleocapsid protein, Biochemistry 37, 17704-17713.
    • (1998) Biochemistry , vol.37 , pp. 17704-17713
    • Kodera, Y.1    Sato, K.2    Tsukahara, T.3    Komatsu, H.4    Maeda, T.5    Kohno, T.6
  • 9
    • 0034700996 scopus 로고    scopus 로고
    • The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle
    • Klein, D. J., Johnson, P. E., Zollars, E. S., De Guzman, R. N., and Summers, M. F. (2000) The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle, Biochemistry 39, 1604-1612.
    • (2000) Biochemistry , vol.39 , pp. 1604-1612
    • Klein, D.J.1    Johnson, P.E.2    Zollars, E.S.3    De Guzman, R.N.4    Summers, M.F.5
  • 10
    • 0031733864 scopus 로고    scopus 로고
    • Solution structure and backbone dynamics of Mason-Pfizer monkey virus (MPMV) nucleocapsid protein
    • Gao, Y., Kaluarachchi K., and Giedroc D. P. (1998) Solution structure and backbone dynamics of Mason-Pfizer monkey virus (MPMV) nucleocapsid protein, Protein Sci. 7, 2265-2280.
    • (1998) Protein Sci. , vol.7 , pp. 2265-2280
    • Gao, Y.1    Kaluarachchi, K.2    Giedroc, D.P.3
  • 12
  • 13
    • 2242469712 scopus 로고    scopus 로고
    • Structure of the HIV-1 nucleocapsid protein bound to the SL3 Ψ-RNA recognition element
    • De Guzman, R. N., Wu, Z. R., Stalling, C. C., Pappalardo, L., Borer, P. N., Summers, M. F. (1998) Structure of the HIV-1 nucleocapsid protein bound to the SL3 Ψ-RNA recognition element, Science 279, 384-388.
    • (1998) Science , vol.279 , pp. 384-388
    • De Guzman, R.N.1    Wu, Z.R.2    Stalling, C.C.3    Pappalardo, L.4    Borer, P.N.5    Summers, M.F.6
  • 14
    • 0034636984 scopus 로고    scopus 로고
    • NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the ψ-RNA packaging signal. Implications for genome recognition
    • Amarasinghe, G. K., De Guzman, R. N., Turner, R. B., Chancellor, K. J., Wu, Z. R., and Summers, M. F. (2000) NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the ψ-RNA packaging signal. Implications for genome recognition, J. Mol. Biol. 307, 491-511.
    • (2000) J. Mol. Biol. , vol.307 , pp. 491-511
    • Amarasinghe, G.K.1    De Guzman, R.N.2    Turner, R.B.3    Chancellor, K.J.4    Wu, Z.R.5    Summers, M.F.6
  • 15
    • 0033885963 scopus 로고    scopus 로고
    • In the beginning: Genome recognition, RNA encapsidation and the initiation of complex retrovirus assembly
    • Jewell, N. A., and Mansky, L. M. (2000) In the beginning: genome recognition, RNA encapsidation and the initiation of complex retrovirus assembly, J. Gen. Virol. 81, 1889-1899.
    • (2000) J. Gen. Virol. , vol.81 , pp. 1889-1899
    • Jewell, N.A.1    Mansky, L.M.2
  • 16
    • 4444239056 scopus 로고    scopus 로고
    • Equine infectious anemia virus (EIAV): What has HIVs country cousin got to tell us?
    • Leroux, C., Cadore, J. L., and Montelaro, R. C. (2004) Equine infectious anemia virus (EIAV): what has HIVs country cousin got to tell us?, Vet. Res. 35, 485-512.
    • (2004) Vet. Res. , vol.35 , pp. 485-512
    • Leroux, C.1    Cadore, J.L.2    Montelaro, R.C.3
  • 17
    • 0035525967 scopus 로고    scopus 로고
    • EIAV, CAEV and other lentivirus vector systems
    • Olsen, J. C. (2001) EIAV, CAEV and other lentivirus vector systems, Somatic Cell Mol. Genet. 26, 131-145.
    • (2001) Somatic Cell Mol. Genet. , vol.26 , pp. 131-145
    • Olsen, J.C.1
  • 18
    • 4444225921 scopus 로고    scopus 로고
    • Non-primate EIAV-based lentiviral vectors as gene delivery system for motor neuron diseases
    • Azzouz, M., and Mazarakis, N. (2004) Non-primate EIAV-based lentiviral vectors as gene delivery system for motor neuron diseases, Curr. Gene Ther. 4, 277-286.
    • (2004) Curr. Gene Ther. , vol.4 , pp. 277-286
    • Azzouz, M.1    Mazarakis, N.2
  • 19
    • 11844281481 scopus 로고    scopus 로고
    • Optimization of equine infectious anemia derived vectors for hematopoietic cell lineage gene transfer
    • O'Rourke, J. P., Olsen, J. C., and Bunnell, B. A. (2005) Optimization of equine infectious anemia derived vectors for hematopoietic cell lineage gene transfer, Gene Ther. 12, 22-29.
    • (2005) Gene Ther. , vol.12 , pp. 22-29
    • O'Rourke, J.P.1    Olsen, J.C.2    Bunnell, B.A.3
  • 20
    • 0023043773 scopus 로고
    • Equine infectious anemia virus gag and pol genes: Relatedness to visna and AIDS virus
    • Stephens, R. M., Casey, J. W., and Rice, N. R. (1986) Equine infectious anemia virus gag and pol genes: relatedness to visna and AIDS virus, Science 231, 589-594.
    • (1986) Science , vol.231 , pp. 589-594
    • Stephens, R.M.1    Casey, J.W.2    Rice, N.R.3
  • 21
    • 0023654385 scopus 로고
    • Interactions of retroviral structural proteins with single-stranded nucleic acids
    • Karpel, R. L., Henderson, L. E., and Oroszlan, S. (1987) Interactions of retroviral structural proteins with single-stranded nucleic acids, J. Biol. Chem. 262, 4961-4967.
    • (1987) J. Biol. Chem. , vol.262 , pp. 4961-4967
    • Karpel, R.L.1    Henderson, L.E.2    Oroszlan, S.3
  • 22
    • 0027258736 scopus 로고
    • Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle
    • Lapadat-Tapolsky, M., De Rocquigny, H., Van-Gent, D., Roques, B., Plasterk, R., and Darlix, J. C. (1993) Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle, Nucleic Acids Res. 21, 831-839.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 831-839
    • Lapadat-Tapolsky, M.1    De Rocquigny, H.2    Van-Gent, D.3    Roques, B.4    Plasterk, R.5    Darlix, J.C.6
  • 23
    • 0029992480 scopus 로고    scopus 로고
    • Isolation of an 11-kDa protein associated with the topoisomerase I activity from equine infectious anemia virus
    • Matsrafi, L., Aflalo, E., Blair, D. G., and Priel, E. (1996) Isolation of an 11-kDa protein associated with the topoisomerase I activity from equine infectious anemia virus, Biochem. Biophys. Res. Commun. 220, 1028-1035.
    • (1996) Biochem. Biophys. Res. Commun. , vol.220 , pp. 1028-1035
    • Matsrafi, L.1    Aflalo, E.2    Blair, D.G.3    Priel, E.4
  • 24
    • 0024110320 scopus 로고
    • Point mutants of Moloney murine leukemia virus that fail to package viral RNA: Evidence for specific RNA recognition by a "zinc finger-like" protein sequence
    • Gorelick, R. J., Henderson, L. E., Hamser, J. P., and Rein, A. (1988) Point mutants of Moloney murine leukemia virus that fail to package viral RNA: evidence for specific RNA recognition by a "zinc finger-like" protein sequence, Proc. Natl. Acad. Sci. U.S.A. 85, 8420-8424.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 8420-8424
    • Gorelick, R.J.1    Henderson, L.E.2    Hamser, J.P.3    Rein, A.4
  • 25
    • 0022978019 scopus 로고
    • Rous sarcoma virus nucleic acid-binding protein p12 is necessary for viral 70S RNA dimer formation and packaging
    • Meric, C., and Spahr, R. F. (1986) Rous sarcoma virus nucleic acid-binding protein p12 is necessary for viral 70S RNA dimer formation and packaging, J. Virol. 60, 450-459.
    • (1986) J. Virol. , vol.60 , pp. 450-459
    • Meric, C.1    Spahr, R.F.2
  • 26
    • 0024026527 scopus 로고
    • Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA
    • Prats, A. C., Sarih, L., Gabus, C., Litvak, S., Keith, G., and Darlix, J. L. (1988) Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA, EMBO J. 7, 1777-1783.
    • (1988) EMBO J. , vol.7 , pp. 1777-1783
    • Prats, A.C.1    Sarih, L.2    Gabus, C.3    Litvak, S.4    Keith, G.5    Darlix, J.L.6
  • 27
    • 0032515322 scopus 로고    scopus 로고
    • Metal ion binding to a zinc finger peptide containing the Cys-X2-Cys-X4-His-X4-Cys domain of a nucleic acid binding protein encoded by the Drosophila Fw-element
    • Bavoso, A., Ostuni, A., Battistuzzi, G., Menabue, L., Saladini, M., and Sola, M. (1998) Metal ion binding to a zinc finger peptide containing the Cys-X2-Cys-X4-His-X4-Cys domain of a nucleic acid binding protein encoded by the Drosophila Fw-element, Biochem. Biophys. Res. Commun. 242, 385-389.
    • (1998) Biochem. Biophys. Res. Commun. , vol.242 , pp. 385-389
    • Bavoso, A.1    Ostuni, A.2    Battistuzzi, G.3    Menabue, L.4    Saladini, M.5    Sola, M.6
  • 28
    • 0000957925 scopus 로고
    • On the metal ion specificity of zinc finger proteins
    • Berg, J. M., and Merkle D. L. (1989) On the metal ion specificity of zinc finger proteins, J. Am. Chem. Soc. 111, 3759-3761.
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 3759-3761
    • Berg, J.M.1    Merkle, D.L.2
  • 30
    • 0344448273 scopus 로고
    • Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy
    • Braunschweiler, L., and Ernst, R. R. (1983) Coherence transfer by isotropic mixing: application to proton correlation spectroscopy, J. Magn. Reson. 53, 521-528.
    • (1983) J. Magn. Reson. , vol.53 , pp. 521-528
    • Braunschweiler, L.1    Ernst, R.R.2
  • 31
    • 33845378943 scopus 로고
    • 1H NMR spectra via two-dimensional homonuclear Hartman-Hahn spectroscopy
    • 1H NMR spectra via two-dimensional homonuclear Hartman-Hahn spectroscopy, J. Am. Chem. Soc. 107, 2820-2821.
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 2820-2821
    • Davis, D.G.1    Bax, A.2
  • 32
    • 0343359244 scopus 로고
    • Investigation of exchange processes by two-dimensional NMR spectroscopy
    • Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) Investigation of exchange processes by two-dimensional NMR spectroscopy, J. Chem. Phys. 71, 4546-4553.
    • (1979) J. Chem. Phys. , vol.71 , pp. 4546-4553
    • Jeener, J.1    Meier, B.H.2    Bachmann, P.3    Ernst, R.R.4
  • 33
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions, J. Biomol. NMR 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 34
    • 2642628181 scopus 로고
    • A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants
    • States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982) A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants, J. Magn. Reson. 48, 286-292.
    • (1982) J. Magn. Reson. , vol.48 , pp. 286-292
    • States, D.J.1    Haberkorn, R.A.2    Ruben, D.J.3
  • 38
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: a program for display and analysis of macromolecular structures, J. Mol. Graph. 14, 51-55.
    • (1996) J. Mol. Graph. , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 40
    • 0025142952 scopus 로고
    • The nucleocapsid protein isolated from HIV-1 particles binds zinc and forms retroviral-type zinc fingers
    • South, T. L., Blake, P. R., Sowder, R. C., Arthur, L. O., Henderson, L. E., and Summers, M. F. (1990) The nucleocapsid protein isolated from HIV-1 particles binds zinc and forms retroviral-type zinc fingers, Biochemistry 29, 7786-7789.
    • (1990) Biochemistry , vol.29 , pp. 7786-7789
    • South, T.L.1    Blake, P.R.2    Sowder, R.C.3    Arthur, L.O.4    Henderson, L.E.5    Summers, M.F.6
  • 42
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Güntert, P., Mumenthaler, M., and Wüthrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA, J. Mol. Biol. 273, 283-298.
    • (1997) J. Mol. Biol. , vol.273 , pp. 283-298
    • Güntert, P.1    Mumenthaler, M.2    Wüthrich, K.3
  • 43
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 44
    • 0030039296 scopus 로고    scopus 로고
    • "PROMOTIF - A program to identify and analyze structural motifs in proteins
    • Hutchinson, E. G., and Thornton, J. M. (1996) "PROMOTIF - A program to identify and analyze structural motifs in proteins, Protein Sci. 5, 212-220.
    • (1996) Protein Sci. , vol.5 , pp. 212-220
    • Hutchinson, E.G.1    Thornton, J.M.2
  • 45
    • 2642580665 scopus 로고    scopus 로고
    • Target specificity of human immunodeficiency virus type 1 NCp7 requires an intact conformation of its CCHC N-terminal zinc finger
    • Ramboarina, S., Druillennec, S., Morellet, N., Bouaziz, S., and Roques, B. P. (2004) Target specificity of human immunodeficiency virus type 1 NCp7 requires an intact conformation of its CCHC N-terminal zinc finger, J. Virol. 78, 6682-6687.
    • (2004) J. Virol. , vol.78 , pp. 6682-6687
    • Ramboarina, S.1    Druillennec, S.2    Morellet, N.3    Bouaziz, S.4    Roques, B.P.5
  • 49
    • 0027197020 scopus 로고
    • The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent
    • Gorelick, R. J., Chabot, D. J., Rein, A., Henderson, L. E., and Arthur, L. O. (1993) The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent, J. Virol. 67, 4027-4036.
    • (1993) J. Virol. , vol.67 , pp. 4027-4036
    • Gorelick, R.J.1    Chabot, D.J.2    Rein, A.3    Henderson, L.E.4    Arthur, L.O.5
  • 52
    • 0033730547 scopus 로고    scopus 로고
    • HIV-1 NCp7 as a target for the design of novel antiviral agents
    • Druillennec, S., and Roques, B. P. (2000) HIV-1 NCp7 as a target for the design of novel antiviral agents, Drugs News & Perspect. 13, 337-349.
    • (2000) Drugs News & Perspect. , vol.13 , pp. 337-349
    • Druillennec, S.1    Roques, B.P.2


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