메뉴 건너뛰기




Volumn 5, Issue 1, 2006, Pages

Quality optimised analysis of general paired microarray experiments

Author keywords

DNA microarray; Empirical bayes; Experimental design; Generalised linear model; Quality control

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; BAYES THEOREM; DNA MICROARRAY; EXPERIMENTAL DESIGN; EXPERIMENTATION; GENE EXPRESSION; MATHEMATICAL COMPUTING; METHODOLOGY; MICROARRAY ANALYSIS; QUALITY CONTROL; SIMULATION; STATISTICAL MODEL; STATISTICAL PARAMETERS; STATISTICS; TECHNIQUE; ANIMAL; BIOSYNTHESIS; EVALUATION; GENE EXPRESSION PROFILING; GENETICS; HEART ASSIST DEVICE; HEART MUSCLE; HUMAN; METABOLISM; MOUSE; ROC CURVE; STANDARD;

EID: 33646369375     PISSN: 15446115     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1209     Document Type: Article
Times cited : (7)

References (20)
  • 2
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • P. Baldi and A.D. Long. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics, 17(6):509-519, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 3
    • 0003747844 scopus 로고    scopus 로고
    • CSIRO Mathematical and Information Sciences, Sydney, Australia
    • M.J. Buckley. Spots User's Guide. CSIRO Mathematical and Information Sciences, Sydney, Australia. http://www.cmis.csiro.au/iap/Spot/spotmanual.htm, 2000.
    • (2000) Spots User's Guide
    • Buckley, M.J.1
  • 4
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in HDL deficient mice
    • M.J. Callow, S. Dudoit, E.L. Gong, T.P. Speed, and E.M. Rubin. Microarray expression profiling identifies genes with altered expression in HDL deficient mice. Genome Research, 10(12):2022-2029, 2000.
    • (2000) Genome Research , vol.10 , Issue.12 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 6
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cdna microarrays
    • G.A. Churchill. Fundamentals of experimental design for cdna microarrays. Nature Genetics Supplement, 32:490-495, 2002.
    • (2002) Nature Genetics Supplement , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 7
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • R. Edgar, M. Domrachev, and A.E. Lash. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research, 30(1):207-210, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 11
    • 0037336332 scopus 로고    scopus 로고
    • QA/QC as a pressing need for microarray analysis: Meeting report from CAMDA'02
    • K. Johnson and S. Lin. QA/QC as a pressing need for microarray analysis: meeting report from CAMDA'02. BioTechniques, 34(suppl):S62-S63, 3 2003.
    • (2003) BioTechniques , vol.34 , Issue.SUPPL.
    • Johnson, K.1    Lin, S.2
  • 14
    • 0036012343 scopus 로고    scopus 로고
    • Replicated microarray data
    • I. Lönnstedt and T. Speed. Replicated microarray data. Statistica Sinica, 12 (1):31-46, 2002.
    • (2002) Statistica Sinica , vol.12 , Issue.1 , pp. 31-46
    • Lönnstedt, I.1    Speed, T.2
  • 15
    • 5344244656 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2004. URL http://www.R-project.org.
    • (2004) R: A Language and Environment for Statistical Computing
  • 16
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • G.K. Smyth. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Smyth, G.K.1
  • 20
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Y.H. Yang, S. Dudoit, P. Luu, D. Lin, V. Peng, J. Ngai, and T.P. Speed. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research, 30(4):e15, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.4
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.