메뉴 건너뛰기




Volumn 20, Issue 3-4, 2006, Pages 239-244

Escherichia coli O antigen typing using DNA microarrays

Author keywords

DNA microarray; Escherichia coli; O7; O104; O111; O157; Serotyping

Indexed keywords

BACTERIAL ANTIGEN; OLIGONUCLEOTIDE;

EID: 33646271359     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2006.01.001     Document Type: Article
Times cited : (24)

References (28)
  • 1
    • 0036652242 scopus 로고    scopus 로고
    • DNA microarray technology used for studying foodborne pathogens and microbial habitats: minireview
    • Al-Khaldi S.F., Martin S.A., Rasooly A., and Evans J.D. DNA microarray technology used for studying foodborne pathogens and microbial habitats: minireview. J AOAC Int 85 (2002) 906-910
    • (2002) J AOAC Int , vol.85 , pp. 906-910
    • Al-Khaldi, S.F.1    Martin, S.A.2    Rasooly, A.3    Evans, J.D.4
  • 2
    • 2142797517 scopus 로고    scopus 로고
    • Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays
    • Alvarez J., Porwollik S., Laconcha I., Gisakis V., Vivanco A.B., Gonzalez I., et al. Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays. Appl Environ Microbiol 69 (2003) 7531-7534
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7531-7534
    • Alvarez, J.1    Porwollik, S.2    Laconcha, I.3    Gisakis, V.4    Vivanco, A.B.5    Gonzalez, I.6
  • 3
    • 13844276549 scopus 로고    scopus 로고
    • Sequence analysis of the Escherichia coli O15 antigen gene cluster and development of a PCR assay for rapid detection of intestinal and extraintestinal pathogenic E. coli O15 strains
    • Beutin L., Tao J., Feng L., Krause G., Zimmermann S., Gleier K., et al. Sequence analysis of the Escherichia coli O15 antigen gene cluster and development of a PCR assay for rapid detection of intestinal and extraintestinal pathogenic E. coli O15 strains. J Clin Microbiol 43 (2005) 703-710
    • (2005) J Clin Microbiol , vol.43 , pp. 703-710
    • Beutin, L.1    Tao, J.2    Feng, L.3    Krause, G.4    Zimmermann, S.5    Gleier, K.6
  • 4
    • 8644289234 scopus 로고    scopus 로고
    • Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing
    • Borucki M.K., Kim S.H., Call D.R., Smole S.C., and Pagotto F. Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing. J Clin Microbiol 42 (2004) 5270-5276
    • (2004) J Clin Microbiol , vol.42 , pp. 5270-5276
    • Borucki, M.K.1    Kim, S.H.2    Call, D.R.3    Smole, S.C.4    Pagotto, F.5
  • 5
    • 0037472040 scopus 로고    scopus 로고
    • Discrimination among Listeria monocytogenes isolates using a mixed genome DNA microarray
    • Borucki M.K., Krug M.J., Muraoka W.T., and Call D.R. Discrimination among Listeria monocytogenes isolates using a mixed genome DNA microarray. Vet Microbiol 92 (2003) 351-362
    • (2003) Vet Microbiol , vol.92 , pp. 351-362
    • Borucki, M.K.1    Krug, M.J.2    Muraoka, W.T.3    Call, D.R.4
  • 6
    • 1342303735 scopus 로고    scopus 로고
    • Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray
    • Bozdech Z., Zhu J., Joachimiak M.P., Cohen F.E., Pulliam B., and DeRisi J.L. Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol 4 (2003) R9
    • (2003) Genome Biol , vol.4
    • Bozdech, Z.1    Zhu, J.2    Joachimiak, M.P.3    Cohen, F.E.4    Pulliam, B.5    DeRisi, J.L.6
  • 7
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call D.R., Borucki M.K., and Loge F.J. Detection of bacterial pathogens in environmental samples using DNA microarrays. J Microbiol Methods 53 (2003) 235-243
    • (2003) J Microbiol Methods , vol.53 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 8
    • 0029120499 scopus 로고    scopus 로고
    • Center for Disease Control and Prevention. Outbreak of acute gastroenteritis attributed to Escherichia coli serotype O104:H21-Helena, Montana, 1994. JAMA, 1995; 274: 529-30.
  • 10
    • 17544377194 scopus 로고    scopus 로고
    • The impact of genomics on drug discovery
    • Debouck C., and Metcalf B. The impact of genomics on drug discovery. Annu Rev Pharmacol Toxicol 40 (2000) 193-207
    • (2000) Annu Rev Pharmacol Toxicol , vol.40 , pp. 193-207
    • Debouck, C.1    Metcalf, B.2
  • 11
    • 23744499302 scopus 로고    scopus 로고
    • Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups
    • DebRoy C., Fratamico P.M., Roberts E., Davis M.A., Briggs C.E., and Liu Y. Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups. Appl Environ Microbiol 71 (2005) 4919-4924
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4919-4924
    • DebRoy, C.1    Fratamico, P.M.2    Roberts, E.3    Davis, M.A.4    Briggs, C.E.5    Liu, Y.6
  • 12
    • 0038156119 scopus 로고    scopus 로고
    • Sequence of the Escherichia coli O121 O-antigen gene cluster and detection of enterohemorrhagic E. coli O121 by PCR amplification of the wzx and wzy genes
    • Fratamico P.M., Briggs C.E., Needle D., Chen C.Y., and DebRoy C. Sequence of the Escherichia coli O121 O-antigen gene cluster and detection of enterohemorrhagic E. coli O121 by PCR amplification of the wzx and wzy genes. J Clin Microbiol 41 (2003) 3379-3383
    • (2003) J Clin Microbiol , vol.41 , pp. 3379-3383
    • Fratamico, P.M.1    Briggs, C.E.2    Needle, D.3    Chen, C.Y.4    DebRoy, C.5
  • 13
    • 2142744331 scopus 로고    scopus 로고
    • Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays
    • Gharizadeh B., Kaller M., Nyren P., Andersson A., Uhlen M., Lundeberg J., et al. Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res 31 (2003) e146
    • (2003) Nucleic Acids Res , vol.31
    • Gharizadeh, B.1    Kaller, M.2    Nyren, P.3    Andersson, A.4    Uhlen, M.5    Lundeberg, J.6
  • 14
    • 0034825987 scopus 로고    scopus 로고
    • The use of genomics technology to investigate gene expression changes in cultured human liver cells
    • Harries H.M., Fletcher S.T., Duggan C.M., and Baker V.A. The use of genomics technology to investigate gene expression changes in cultured human liver cells. Toxicol In Vitro 15 (2001) 399-405
    • (2001) Toxicol In Vitro , vol.15 , pp. 399-405
    • Harries, H.M.1    Fletcher, S.T.2    Duggan, C.M.3    Baker, V.A.4
  • 15
    • 7444221126 scopus 로고    scopus 로고
    • Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs
    • Hashsham S.A., Wick L.M., Rouillard J.M., Gulari E., and Tiedje. Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. Biosens Bioelectron 20 4 (2004) 668-683
    • (2004) Biosens Bioelectron , vol.20 , Issue.4 , pp. 668-683
    • Hashsham, S.A.1    Wick, L.M.2    Rouillard, J.M.3    Gulari, E.4    Tiedje5
  • 16
    • 0042522548 scopus 로고    scopus 로고
    • Detection and identification of Escherichia coli. Shigella, and Salmonella by microarrays using the gyrB gene
    • Kakinuma K., Fukushima M., and Kawaguchi R. Detection and identification of Escherichia coli. Shigella, and Salmonella by microarrays using the gyrB gene. Biotechnol Bioeng 83 (2003) 721-728
    • (2003) Biotechnol Bioeng , vol.83 , pp. 721-728
    • Kakinuma, K.1    Fukushima, M.2    Kawaguchi, R.3
  • 17
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
    • Kane M.D., Jatkoe T.A., Stumpf C.R., Lu J., Thomas J.D., and Madore S.J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res 28 (2000) 4552-4557
    • (2000) Nucleic Acids Res , vol.28 , pp. 4552-4557
    • Kane, M.D.1    Jatkoe, T.A.2    Stumpf, C.R.3    Lu, J.4    Thomas, J.D.5    Madore, S.J.6
  • 18
    • 0032829234 scopus 로고    scopus 로고
    • Genetic organization of the O7-specific lipopolysaccharide biosynthesis cluster of Escherichia coli VW187 (O7:K1)
    • Marolda C.L., Feldman M.F., and Valvano M.A. Genetic organization of the O7-specific lipopolysaccharide biosynthesis cluster of Escherichia coli VW187 (O7:K1). Microbiology 145 (1999) 2485-2495
    • (1999) Microbiology , vol.145 , pp. 2485-2495
    • Marolda, C.L.1    Feldman, M.F.2    Valvano, M.A.3
  • 19
    • 0031984684 scopus 로고    scopus 로고
    • Diarrheagenic Escherichia coli
    • Nataro J.P., and Kaper J.B. Diarrheagenic Escherichia coli. Clin Microbiol Rev 11 (1998) 142-201
    • (1998) Clin Microbiol Rev , vol.11 , pp. 142-201
    • Nataro, J.P.1    Kaper, J.B.2
  • 20
    • 0017689980 scopus 로고
    • Serology, chemistry and genetics of O and K antigens of Escherichia coli
    • Ørskov I., Ørskov F., Jann B., and Jann K. Serology, chemistry and genetics of O and K antigens of Escherichia coli. Bacteriol Rev 41 (1977) 667-710
    • (1977) Bacteriol Rev , vol.41 , pp. 667-710
    • Ørskov, I.1    Ørskov, F.2    Jann, B.3    Jann, K.4
  • 21
    • 0021369640 scopus 로고
    • Degree of antibody-independent activation of the classical complement pathway by K1 Escherichia coli differs with O antigen type and correlates with virulence of meningitis in newborns
    • Pluschke G., and Achtman M. Degree of antibody-independent activation of the classical complement pathway by K1 Escherichia coli differs with O antigen type and correlates with virulence of meningitis in newborns. Infect Immun 43 (1984) 684-692
    • (1984) Infect Immun , vol.43 , pp. 684-692
    • Pluschke, G.1    Achtman, M.2
  • 23
    • 0028801764 scopus 로고
    • Escherichia coli O157:H7: clinical, diagnostic, and epidemiological aspects of human infection
    • Tarr P.I. Escherichia coli O157:H7: clinical, diagnostic, and epidemiological aspects of human infection. Clin Infect Dis 20 (1995) 1-8
    • (1995) Clin Infect Dis , vol.20 , pp. 1-8
    • Tarr, P.I.1
  • 24
    • 14844345010 scopus 로고    scopus 로고
    • DNA microarrays in clinical cancer research
    • Wadlow R., and Ramaswamy S. DNA microarrays in clinical cancer research. Curr Mol Med 5 (2005) 111-120
    • (2005) Curr Mol Med , vol.5 , pp. 111-120
    • Wadlow, R.1    Ramaswamy, S.2
  • 25
    • 0035972864 scopus 로고    scopus 로고
    • Sequence of the E. coli O104 antigen gene cluster and identification of O104 specific genes
    • Wang L., Briggs C.E., Rothemund D., Fratamico P., Luchansky J.B., and Reeves P.R. Sequence of the E. coli O104 antigen gene cluster and identification of O104 specific genes. Gene 270 (2001) 231-236
    • (2001) Gene , vol.270 , pp. 231-236
    • Wang, L.1    Briggs, C.E.2    Rothemund, D.3    Fratamico, P.4    Luchansky, J.B.5    Reeves, P.R.6
  • 26
    • 0031697074 scopus 로고    scopus 로고
    • Sequencing of Escherichia coli O111 O-antigen gene cluster and identification of O111-specific genes
    • Wang L., Curd H., Qu W., and Reeves P.R. Sequencing of Escherichia coli O111 O-antigen gene cluster and identification of O111-specific genes. J Clin Microbiol 36 (1998) 3182-3187
    • (1998) J Clin Microbiol , vol.36 , pp. 3182-3187
    • Wang, L.1    Curd, H.2    Qu, W.3    Reeves, P.R.4
  • 27
    • 0031824601 scopus 로고    scopus 로고
    • Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes
    • Wang L., and Reeves P.R. Organization of Escherichia coli O157 O antigen gene cluster and identification of its specific genes. Infect Immun 66 (1998) 3545-3551
    • (1998) Infect Immun , vol.66 , pp. 3545-3551
    • Wang, L.1    Reeves, P.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.