Phenotypic structure of Pseudomonas populations is altered under elevated pCO2 in the rhizosphere of perennial grasses

Soil Biology and Biochemistry

Volumn 38, Issue 6, 2006, Pages 1193-1201

  Tarnawski, S ^a   Hamelin, J ^a,b   Jossi, M ^a   Aragno, M ^a   Fromin, N ^a,c  

^a UNIVERSITY OF NEUCHÂTEL   (Switzerland)

^b LABORATOIRE DE BIOTECHNOLOGIE DE L ENVIRONNEMENT   (France)

^c CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

Author keywords

Auxin; Hydrogen cyanide; Nitrate reduction; PGPR; Plant growth promoting rhizobacteria; Rhizosphere competence; Root colonisation; Siderophores

Indexed keywords

CARBON DIOXIDE; ECOSYSTEMS; HYDROGEN INORGANIC COMPOUNDS; NITRATES; PLANTS (BOTANY); SOILS;

AUXIN; HYDROGEN CYANIDE; NITRATE REDUCTION; PGPR; PLANT GROWTH PROMOTING RHIZOBACTERIA; RHIZOSPHERE COMPETENCE; ROOT COLONISATION; SIDEROPHORES;

BACTERIA;

GRASS; NITRATE; RHIZOSPHERE; ROOT; SOIL MICROORGANISM;

BACTERIA (MICROORGANISMS); LOLIUM PERENNE; MOLINIA CAERULEA; POACEAE; PSEUDOMONAS; RHIZOBIALES;

EID: 33646270611     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2005.10.003     Document Type: Article

References (58)

1. Angle J.S., McGrath S.P., and Chaney R.L. New culture medium containing ionic concentrations of nutrients similar to concentrations found in the soil solution. Applied and Environmental Microbiology 57 (1991) 3674-3676
2. Arshad M., and Frankenberg W.T. Microbial production of plant hormones. Plant and Soil 133 (1991) 1-8
3. Bakker A.W., and Schippers B. Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas spp. mediated plant growth-stimulation. Soil Biology and Biochemistry 19 (1987) 451-457
4. Blumer C., and Haas D. Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis. Archives of Microbiology 173 (2000) 170-177
5. Bric J.M., Bostock R.M., and Silverstone S.E. Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Applied and Environmental Microbiology 57 (1991) 535-538
6. Castric P.A. Glycine metabolism by Pseudomonas aeruginosa: hydrogen cyanide biosynthesis. Journal of Bacteriology 130 (1977) 826-831
7. Castric P.A. Hydrogen cyanide production by Pseudomonas aeruginosa at reduced oxygen levels. Canadian Journal of Microbiology 29 (1983) 1344-1349
8. Castric K.F., and Castric P.A. Method for rapid detection of cyanogenic bacteria. Applied and Environmental Microbiology 45 (1983) 701-702
9. Clays-Josserand A., Ghiglione J.F., Philippot L., Lemanceau P., and Lensi R. Effect of soil type and plant species on the fluorescent pseudomonads nitrate dissimilating community. Plant and Soil 209 (1999) 275-282
10. 2 enrichment increased over six in a high N input system on fertile soil. Global Change Biology 6 (2000) 805-816
11. 2 levels. Plant and Soil 187 (1996) 265-276
12. Elad Y., and Baker R. The role of competition for iron and carbon in suppression of chlamydospore germination of Fusarium oxysporum by Pseudomonas spp. Phytopathology 75 (1985) 1053-1059
13. Forlani G., Pastorelli R., Branzoni M., and Favilli F. Root colonization efficiency, plant growth promoting activity and potentially related properties in plant associated bacteria. Journal of Genetics and Breeding 49 (1995) 343-352
14. 2 (Swiss FACE). Soil Biology & Biochemistry 37, 1962-1965.
15. 2, ozone, and global climate change. Agriculture, Ecosystems and Environment 97 (2003) 1-20
16. Gamble T.N., Betlach M.R., and Tiedje J.M. Numerically dominant denitrifying bacteria from world soils. Applied and Environmental Microbiology 33 (1977) 916-939
17. Ghiglione J.F., Gourbière F., Potier P., Philippot L., and Lensi R. Role of respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize. Applied and Environmental Microbiology 66 (2000) 4012-4016
18. Glick B.R. The enhancement of plant growth by free-living bacteria. Canadian Journal of Microbiology 41 (1995) 109-117
19. Glickmann E., and Dessaux Y. A critical examination of the specificity of the Salkowski reagent for indolic compounds produced by phytopathogenic bacteria. Applied and Environmental Microbiology 61 (1995) 793-796
20. Gobat J.M., Aragno M., and Matthey W. The living soil. Fundamentals of Soil Science and Soil Biology (2004), Science Publishers, Inc., USA 475 pp
21. 2 on the metabolic diversity of microbial communities in N-limited grass swards. Plant and Soil 203 (1998) 289-300
22. Griffiths B.S., Ritz K., Ebblewhite N., Paterson E., and Killham K. Ryegrass rhizosphere microbial community structure under elevated carbon dioxide concentrations, with observation on wheat rhizosphere. Soil Biology and Biochemistry 30 (1998) 315-321
23. Halda-Alija L. Identification of indol-3-acetic acid producing freshwater wetland rhizosphere bacteria associated with Juncus effusus L. Canadian Journal of Microbiology 49 (2003) 781-787
24. Hamelin J., Fromin N., Teyssier-Cuvelle S., Tarnawski S., and Aragno M. nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass. Environmental Microbiology 4 (2002) 477-481
25. 2 enrichment and management. Global Change Biology 3 (1997) 149-160
26. 2 enrichment. Soil Biology and Biochemistry 30 (1998) 1033-1043
27. Højberg O., Schnider U., Winteler H.V., Sørensen J., and Haas D. Oxygen-sensing reporter strains of Pseudomonas fluorescens for monitoring the distribution of low-oxygen habitats in soil. Applied and Environmental Microbiology 65 (1999) 4085-4093
28. 2 enrichment. Trends in Ecology and Evolution 11 (1999) 433-437
29. 2 in the field. Plant, Cell and Environment 23 (2000) 597-607
30. 2 and temperature in a terrestrial model ecosystem. Plant and Soil 202 (1998) 251-262
31. Khalid A., Arshad M., and Zahir Z.A. Screening plant growth-promoting rhizobacteria for improving growth and yield of wheat. Journal of Applied Microbiology 96 (2004) 473-480
32. Kloepper J.W., Leong J., Teintze M., and Schorth M.N. Enhanced plant growth by siderophores produced by plant growth promoting rhizobacteria. Nature 286 (1980) 885-886
33. Kremer R.J., and Souissi T. Cyanide production by rhizobacteria and potential for suppression of weed seedling growth. Current Microbiology 43 (2001) 182-186
34. Kuzyakov Y. Tracer studies of carbon translocation by plants from the atmosphere into the soil (a review). Eurasian Soil Science 34 (2001) 28-42
35. Lebuhn M., Heulin T., and Hartman A. Production of auxin and other indolic and phenolic compounds by Paenibacillus polymyxa strains isolated from different proximity to plant roots. FEMS Microbiology Ecology 22 (1997) 325-334
36. Lemanceau P., Bakker P.A.H.M., De Kogel W.J., Alabouvette C., and Schippers B. Antagonistic effect of nonpathogenic Fusarium oxysporum Fo47 and Pseudobactin 358 upon pathogenic Fusarium oxysporum f. sp. dianthi. Applied and Environmental Microbiology 59 (1993) 74-82
37. Lemanceau P., Corberand T., Gardan L., Latour X., Laguerre G., Boeufgras J.-M., and Alabouvette C. Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads. Applied and Environmental Microbiology 61 (1995) 1004-1012
38. Linne von Berg K.H., and Bothe H. The distribution of denitrifying bacteria in soils monitored by DNA-probing. FEMS Microbiology Ecology 86 (1992) 331-340
39. Locatelli L., Tarnawski S., Hamelin J., Rossi P., Aragno M., and Fromin N. Specific PCR amplification for the genus Pseudomonas targeting the 3′ half of 16S rDNA and the whole 16S-23S rDNA spacer. Systematic and Applied Microbiology 25 (2002) 220-227
40. Lugtenberg B.J.J., and Dekkers L.C. What makes Pseudomonas bacteria rhizosphere competent?. Environmental Microbiology 1 (1999) 9-13
41. Lynch J.M., and Whipps J.M. Substrate flow in the rhizosphere. Plant and Soil 129 (1990) 1-10
42. 2 content on soil and rhizosphere bacterial communities beneath Lolium perenne and Trifolium repens under field conditions. Microbial Ecology 38 (1999) 39-49
43. Montealegre C.M., van Kessel C., Russelle M.P., and Sadowsky M.J. Changes in microbial activity and composition in a pasture ecosystem exposed to elevated atmospheric carbon dioxide. Plant and Soil 243 (2002) 187-207
44. O'Sullivan D.J., and O'Gara F. Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiological Reviews 56 (1992) 662-676
45. Paterson E. Importance of rhizodeposition in the coupling of plant and microbial productivity. European Journal of Soil science 54 (2003) 741-750
46. Patten C.L., and Glick B.R. Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Applied and Environmental Microbiology 68 (2002) 3795-3801
47. Persello-Cartieaux F., Nussaume L., and Robaglia C. Tales from the underground: molecular plant-rhizobacteria interactions. Plant Cell and Environment 26 (2003) 189-199
48. Rainey P.B. Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environmental Microbiology 1 (1999) 243-257
49. R Development Core Team, 2004. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-00-3, URL http://www.R-project.org.
50. Roussel-Delif, L., Tarnawski, S., Hamelin, J., Philippot, L., Aragno, M., Fromin, N., 2005. Frequency and diversity of nitrate reductase genes among nitrate-dissimilating Pseudomonas in the rhizosphere of perennial grasses grown in field conditions. Microbial Ecology 49, 63-72.
51. Schwyn B., and Neilands J.B. Universal chemical assay for the detection and determination siderophores. Analytical Biochemistry Journal 160 (1987) 47-56
52. Sørensen J., Jensen L.E., and Nybrøe O. Soil and rhizosphere as habitats for Pseudomonas inoculants: new knowledge on distribution, activity and physiological state derived from micro-scale and single-cell studies. Plant and Soil 232 (2001) 97-108
53. Stres B., Mahne I., Avgustin G., and Tiedje J.M. Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Applied and Environmental Microbiology 70 (2004) 301-309
54. 2 enrichment but not in a controlled environment. New Phytologist 154 (2002) 65-75
55. Tarnawski S., Hamelin J., Locatelli L., Aragno M., and Fromin N. Examination of Gould's modified S1 (mS1) selective medium and Angle's non-selective medium for collecting diversity of Pseudomonas spp. in soil and root environments. FEMS Microbiology Ecology 45 (2003) 97-104
56. Vázquez de Aldana B.R., and Berendse F. Nitrogen-use efficiency in six perennial grasses from contrasting habitats. Functional Ecology 11 (1997) 619-626
57. Voisard C., Keel C., Haas D., and Défago G. Cyanide production by Pseudomonas fluorescens helps suppress black root rot of tobacco under gnotobiotic conditions. The EMBO Journal 8 (1989) 351-358
58. 2 enrichment. Chinese Science Bulletin 45 (2000) 97-101