Phylogeography of Pallas's squirrel in Taiwan: Geographical isolation in an arboreal small mammal

Journal of Mammalogy

Volumn 87, Issue 2, 2006, Pages 247-254

  Oshida, Tatsuo ^a,c   Lee, Jen Kai ^a   Lin, Liang Kong ^a   Chen, Yen Jean ^b  

^a TUNGHAI UNIVERSITY   (Taiwan)

^b NATIONAL MUSEUM OF NATURAL SCIENCE   (Taiwan)

^c OBIHIRO UNIVERSITY OF AGRICULTURE AND VETERINARY MEDICINE   (Japan)

Author keywords

Callosciurus erythraeus; Geographical isolation; Mitochondrial DNA control region; Mountain range; Pallas's squirrel

Indexed keywords

MITOCHONDRIAL DNA; MOUNTAIN REGION; PHYLOGEOGRAPHY; PLEISTOCENE; POPULATION DISTRIBUTION; SMALL MAMMAL;

ASIA; EURASIA; FAR EAST; TAIWAN;

CALLOSCIURUS ERYTHRAEUS; MAMMALIA; SCIURIDAE;

EID: 33646237352     PISSN: 00222372     EISSN: None     Source Type: Journal    
DOI: 10.1644/05-MAMM-A-123R1.1     Document Type: Article

References (58)

1. ANDERSON, S., ET AL. 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
2. ANIMAL CARE AND USE COMMITTEE. 1998. Guidelines for the capture, handling, and care of mammals as approved by the American Society of Mammalogists. Journal of Mammalogy 79:1416-1431.
3. BARRATT, E. M., J. GURNELL, G. MALARKY, R. DEAVILLE, AND M. W. BRUFORD. 1999. Genetic structure of fragmented populations of red squirrel (Sciurus vulgaris) in the UK. Molecular Ecology 8:S55-S63.
4. BROWN, G. G., G. GADALETA, G. PEPE, C. SACCONE, AND E. SBISA. 1986. Structural conservation and variation in the D loop-containing region of vertebrate mitochondrial DNA. Journal of Molecular Biology 192:503-511.
5. BRUNHOFF, C., K. E. GALBREATH, V. B. FEDOROV, J. A. COOK, AND M. JAAROLA. 2003. Holarctic phylogeography of the root vole (Microtus oeconomus): implication for late Quaternary biogeography of high latitudes. Molecular Ecology 12:957-968.
6. CHANG, H.-W., AND K.-C. LIU. 1997. Biogeography and molecular phylogeny of the Swinhoe's tree lizard. Pp. 75-94 in Proceedings of the Symposium on the Conservation and Management of Wildlife (Y. S. Lin, ed.). Council of Agriculture, Taipei, Taiwan (in Chinese).
7. CLEMENT, M., J. DERINGTON, AND D. POSADA. 2001. TCS: estimating gene genealogies Version 1.13. Brigham Young University, Provo, Utah.
8. CORBET, G. B., AND J. E. HILL. 1992. The mammals of the Indomalayan region: a systematic review. Oxford University Press, Oxford, United Kingdom.
9. COX, C. B., AND P. D. MOORE. 2000. Biogeography: an ecological and evolutionary approach. 6th ed. Blackwell Science Ltd., Oxford, United Kingdom.
10. EXCOFFIER, L., P. SMOUSE, AND J. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
11. FEDOROV, V. B., K. FREDGA, AND G. H. JARRELL. 1999. Mitochondrial DNA variation and the evolutionary history of chromosome races of collared lemmings (Dicrostonyx) in the Eurasian Arctic. Journal of Evolutionary Biology 12:134-145.
12. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
13. HAFFER, J. 1969. Speciation in Amazonian forest birds. Science 165:131-137.
14. HASEGAWA, M., H. KISHINO, AND T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22:160-174.
15. HAYNES, S., M. JAAROLA, AND J. B. SEARLE. 2003. Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney Archipelago. Molecular Ecology 12: 951-956.
16. HO, C-K., G.-Q. QI, AND C.-H. CHANG. 1997. A preliminary study of late Pleistocene carnivore fossils from the Penghu Channel, Taiwan. Annual of Taiwan Museum 40:195-224.
17. HOELZEL, A. R., J. V. LOPEZ, G. A. DOVER, AND S. J. O'BRIEN. 1994. Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores. Journal of Molecular Evolution 39:191-199.
18. HORIKAWA, Y. 1932. Illustrated encyclopedia of mammals of Taiwan. Shuei-chan Press, Taipei, Taiwan (in Japanese).
19. HSU, F.-H., F.-J. LIN, AND Y.-S. LIN. 2000. Phylogeographic variation in mitochondrial DNA of Formosan white-bellied rat Niviventer culturatus. Zoological Studies 39:38-46.
20. HU, C.-H., AND H.-J. TAO. 1993. Monograph of fossil fauna in Penghu Peninsula. Culture Center of Penghu Hsien, Penghu, Taiwan (in Chinese).
21. HUANG, J. 1984. Change of sea-level since the late Pleistocene in China. Pp. 309-319 in The evolution of the East Asian environment (R. O. Whyte, ed.). Center of Asian Studies, University of Hong Kong, Hong Kong.
22. HUANG, S. S. F., S.-Y. HWANG, AND T. P. LIN. 2002. Spacial pattern of chloroplast DNA variation of Cyclobalanopsis glauca in Taiwan and East Asia. Molecular Ecology 11:2349-2358.
23. HUANG, S.-Y., AND T.-C. HUANG. 1977a. Paleoecological study of Taiwan: 5. Toushe Basin. Taiwania 22:1-44.
24. HUANG, S.-Y., AND T.-C. HUANG. 1977b. Paleoecological study of Taiwan: 7. Pollen analysis of Yueh Tan. Bulletin of Experimental Forests, National Taiwan University 20:185-196.
25. JONES, G. S., L. B. LIM, AND J. H. CROSS. 1971. Review, a key to the mammals of Taiwan. Chinese Journal of Microbiology 4:267-268.
26. JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in Mammalian protein metabolism (H. N. Munro, ed.). Academic Press, New York.
27. LIEW, P.-M., C.-M. KUO, S.-Y. HUANG, AND M.-H. TSENG. 1998. Vegetation change and terrestrial carbon storage in eastern Asia during last glacial maximum as indicated by a new pollen record from central Taiwan. Global and Planetary Change 16-17:85-94.
28. LIN, T.-P. 2001. Allozyme variations in Michelia formosana (Kanehira) Masamune (Magnoliaceae), and the inference of a glacial refugium in Taiwan. Theoretical and Applied Genetics 102:450-457.
29. LIU, D., AND M. DING. 1984. The characteristics and evolution of the paleoenvironment of China since the late Tertiary. Pp. 11-40 in The evolution of the East Asian environment (R. O. Whyte, ed.). Center of Asian Studies, University of Hong Kong, Hong Kong.
30. MALDONADO, J. E., C. VILA, AND R. K. WAYNE. 2001. Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus). Molecular Ecology 10:127-147.
31. MATOCQ, M. D. 2002. Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes. Molecular Ecology 11:229-242.
32. MATSUHASHI, T., R. MASUDA, T. MANO, AND M. C. YOSHIDA. 1999. Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) population. Molecular Biology and Evolution 16:676-684.
33. MICHAUX, J. R., E. MAGNANOU, E. PARADIS, C. NIEBERDING, AND R. LIBOIS. 2003. Mitochondrial phylogeography of the woodmouse (Apodemus sylvaticus) in the western Palearctic region. Molecular Ecology 12:685-697.
34. MOORE, J. C., AND G. H. H. TATE. 1965. A study of the diurnal squirrels, Sciurinae, of the Indian and Indo Chinese subregions. Fieldiana: Zoology 48:1-351.
35. NAGATA, J., R. MASUDA, K. KAJI, M. KANEKO, AND M. C. YOSHIDA. 1998. Genetic variation and population structure of the Japanese sika deer (Cervus nippon) in Hokkaido island, based on mitochondrial D-loop sequences. Molecular Ecology 7:871-877.
36. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
37. NOWAK, R. M. 1991. Walker's mammals of the world. 5th ed. Vol. 1. Johns Hopkins University Press. Baltimore, Maryland.
38. OSHIDA, T., K. IKEDA, K. YAMADA, AND R. MASUDA. 2001. Phylogeography of the Japanese giant flying squirrel, Petaurista leucogenys, based on mitochondrial DNA control region sequences. Zoological Science 18:107-114.
39. OSHIDA, T., M. C. SHAFIQUE, S. BARKATI, AND R. MASUDA. 2004. A preliminary study of genetic diversity of small populations of two flying squirrels from Pakistan (Hylopetes fimbriatus and Petaurista petaurista albiventer), based on mitochondrial DNA control region sequences. Mammal Study 29:21-26.
40. POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
41. POSADA, D., K. A. CRANDALL, AND A. R. TEMPLETON. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotype. Molecular Ecology 9:487-488.
42. 2 and the problem of the small samples. Molecular Biology and Evolution 6:539-545.
43. ROZAS, J., AND R. ROZAS. 1999. DNASP, version 3.51: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
44. SACCONE, C., G. PESOLE, AND E. SBISA. 1991. The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. Journal of Molecular Evolution 33:83-91.
45. SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
46. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATIS. 1989. Molecular cloning: a laboratory Manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
47. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 2000. ARLEQUIN ver 2.000: a software for population genetics data analysis. University of Geneva, Geneva, Switzerland.
48. SOUTHERN, S. O., P. J. SOUTHERN, AND A. E. DIZON. 1988. Molecular characterization of a cloned dolphin mitochondrial genome. Journal of Molecular Evolution 28:32-42.
49. SWOFFORD, D. L. 2001. PAUP* phylogenetic analysis using parsimony (*and other methods). Version 4.0 beta. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
50. TAJIMA, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
51. TANG, D.-C., AND P. S. ALEXANDER. 1979. The reproductive cycle of the red-bellied tree squirrel (Callosciurus erythraeus) in Taiwan. Biological Bulletin 51:1-7.
52. TEMPLETON, A. R. 1998. Nested clade analysis of phylogeographic data-testing hypotheses about gene flow and population history. Molecular Ecology 7:381-397.
53. TEMPLETON, A. R. 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology 13:789-809.
54. TEMPLETON, A. R., K. A. CRANDALL, AND C. F. SING. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction site endonuclease mapping and DNA sequence data. (III) Cladogram estimation. Genetics 132:619-633.
55. TEMPLETON, A. R., E. ROUTMAN, AND C. A. PHILLIPS. 1995. Separating population structure from population history: a caldistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782.
56. TODA, M., M. NISHIDA, M. MATSUI, K.-Y. LUE, AND H. OTA. 1998. Genetic variation in the Indian rice frog, Rana limnocharis (Amphibia: Anura) in Taiwan, as revealed by allozyme data. Herpetologica 54:73-82.
57. TSUKADA, M. 1967. Vegetation in subtropical Formosa during the Pleistocene glaciations and the Holocene. Palaeogeography, Palaeoclirnatology, Palaeoecology 3:49-64.
58. YEH, W.-S. 1997. Phylogeographic structure of Rhacophorus moltrechti. M.S. thesis, National Taiwan University, Taipei, Taiwan (in Chinese).