LoPPS: A long PCR product sequencing method for rapid characterisation of long amplicons

Biochemical and Biophysical Research Communications

Volumn 344, Issue 4, 2006, Pages 1080-1085

  Emonet, Sébastien ^a   Grard, Gilda ^a   Brisbarre, Nadège ^a   Moureau, Gregory ^a   Temmam, Sarah ^a   Charrel, Rémi ^a   Lamballerie, Xavier de ^a  

^a Aix Marseille University IRD 190 Inserm 1207   (France)

Author keywords

LoPPS; PCR; RNA viruses; Sequencing

Indexed keywords

PLASMID DNA;

AMPLICON; ARTICLE; AUTOMATION; BACTERIAL GROWTH; CONTROLLED STUDY; GENE SEQUENCE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA VIRUS;

DNA; POLYMERASE CHAIN REACTION; RNA VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA;

BACTERIA (MICROORGANISMS); RNA VIRUSES;

EID: 33646185794     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.04.015     Document Type: Article

References (9)

1. Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlavage A.R., Bult C.J., Tomb J.F., Dougherty B.A., Merrick J.M., et al. Whole-genome random sequencing and assembly of Heamophilus influenzae Rd. Science 269 (1995) 496-512
2. Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., Smith H.O., Yandell M., Evans C.A., Holt R.A., Gocayne J.D., Amanatides P., Ballew R.M., Huson D.H., Wortman J.R., Zhang Q., Kodira C.D., Zheng X.H., Chen L., Skupski M., Subramanian G., Thomas P.D., Zhang J., Gabor Miklos G.L., Nelson C., Broder S., Clark A.G., Nadeau J., McKusick V.A., Zinder N., Levine A.J., Roberts R.J., Simon M., Slayman C., Hunkapiller M., Bolanos R., Delcher A., Dew I., Fasulo D., Flanigan M., Florea L., Halpern A., Hannenhalli S., Kravitz S., Levy S., Mobarry C., Reinert K., Remington K., Abu-Threideh J., Beasley E., Biddick K., Bonazzi V., Brandon R., Cargill M., Chandramouliswaran I., Charlab R., Chaturvedi K., Deng Z., Di Francesco V., Dunn P., Eilbeck K., Evangelista C., Gabrielian A.E., Gan W., Ge W., Gong F., Gu Z., Guan P., Heiman T.J., Higgins M.E., Ji R.R., Ke Z., Ketchum K.A., Lai Z., Lei Y., Li Z., Li J., Liang Y., Lin X., Lu F., Merkulov G.V., Milshina N., Moore H.M., Naik A.K., Narayan V.A., Neelam B., Nusskern D., Rusch D.B., Salzberg S., Shao W., Shue B., Sun J., Wang Z., Wang A., Wang X., Wang J., Wei M., Wides R., Xiao C., Yan C., et al. The sequence of the human genome. Science 291 (2001) 1304-1351
3. Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rush D., Eisen J.A., Wu D., Paulsen I., Nelson K.E., Nelson W., Fouts D.E., Levy S., Knap A.H., Lomas M.W., Nealson K., White O., Peterson J., Hoffman J., Parsons R., Baden-Tillson H., Pfannkoch C., Rogers Y.H., and Smith H.O. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 (2004) 66-74
4. Goff S.A., Ricke D., Lan T.H., Presting G., Wang R., Dunn M., Glazebrook J., Sessions A., Oeller P., Varma H., Hadley D., Hutchison D., Martin C., Katagiri F., Lange B.M., Moughamer T., Xia Y., Budworth P., Zhong J., Miguel T., Paszkowski U., Zhang S., Colbert M., Sun W.L., Chen L., Cooper B., Park S., Wood T.C., Mao L., Quail P., Wing R., Dean R., Yu Y., Zharkikh A., Shen R., Sahasrabudhe S., Thomas A., Cannings R., Gutin A., Pruss D., Reid J., Tavtigian S., Mitchell J., Eldredge G., Scholl T., Miller R.M., Bhatnagar S., Adey N., Rubano T., Tusneem N., Robinson R., Feldhaus J., Macalma T., Oliphant A., and Briggs S. A draft sequence of the rice genome (Oryza sativa L. ssp. Japonica). Science 296 (2002) 92-100
5. Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., et al. The genome sequence of Drosophila melanogaster. Science 287 (2000) 2185-2195
6. Jones T., Federspiel N.A., Chibana H., Dungan J., Kalman S., Magee B.B., Newport G., Thorstenson Y.R., Agabian N., Magee P.T., Davis R.W., and Scherer .S. The diploid genome sequence of Candida albicans. Proc. Natl. Acad. Sci. USA 101 (2004) 7329-7334
7. Weber J.L., and Myers E.W. Human whole-genome shotgun sequencing. Genome Res. 7 (1997) 401-409
8. Clarke L., and Carbon J. A colony bank containing synthetic Col E1 hybrid plasmids representative of the entire E. coli genome. Cell 9 (1976) 91-99
9. Reed S.E., Tsai C.H., Willie K.J., Redinbaugh M.G., and Hogenhout S.A. Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus Maize mosaic virus. J. Virol. Methods 129 (2005) 91-96