-
1
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
S.F. Altschul, T.L. Maden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman. Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res., 25(17):3389-3402, 1997.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Maden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
19544374490
-
Genome rearrangement distances and gene order phylogeny in γ-proteobacteria
-
E. Belda, A. Moya, and F.J. Silva. Genome rearrangement distances and gene order phylogeny in γ-proteobacteria. Mol. Biol. Evol., 22(6):1456-1467, 2005.
-
(2005)
Mol. Biol. Evol.
, vol.22
, Issue.6
, pp. 1456-1467
-
-
Belda, E.1
Moya, A.2
Silva, F.J.3
-
3
-
-
33646150089
-
Conserved structures in evolution scenarios
-
Comparative Genomics, RECOMB 2004 International Workshop. Springer
-
S. Bérard, A. Bergeron, and C. Chauve. Conserved structures in evolution scenarios. In Comparative Genomics, RECOMB 2004 International Workshop, volume 3388 of Lecture Notes in Bioinformatics, pages 1-15. Springer, 2004.
-
(2004)
Lecture Notes in Bioinformatics
, vol.3388
, pp. 1-15
-
-
Bérard, S.1
Bergeron, A.2
Chauve, C.3
-
4
-
-
35248882900
-
On the similarity of sets of permutations and its applications to genome comparison
-
9th International Computing and Combinatorics Conference (COCOON '03). Springer
-
A. Bergeron and J. Stoye. On the similarity of sets of permutations and its applications to genome comparison. In 9th International Computing and Combinatorics Conference (COCOON '03), volume 2697 of Lecture Notes in Computer Science, pages 68-79. Springer, 2003.
-
(2003)
Lecture Notes in Computer Science
, vol.2697
, pp. 68-79
-
-
Bergeron, A.1
Stoye, J.2
-
5
-
-
0032770572
-
Gene order breakpoint evidence in animal mitochondrial phylogeny
-
M. Blanchette, T. Kunisawa, and D. Sankoff. Gene order breakpoint evidence in animal mitochondrial phylogeny. J. Mol. Evol., 49(2):193-203, 1999.
-
(1999)
J. Mol. Evol.
, vol.49
, Issue.2
, pp. 193-203
-
-
Blanchette, M.1
Kunisawa, T.2
Sankoff, D.3
-
6
-
-
26844550399
-
The breakpoints distance for signed sequences
-
1st International Conference on Algorithms and Computational Methods for Biochemical and Evolutionary Networks, CompBioNets 2004. KCL Publications
-
G. Blin, C. Chauve, and G. Fertin. The breakpoints distance for signed sequences. In 1st International Conference on Algorithms and Computational Methods for Biochemical and Evolutionary Networks, CompBioNets 2004, volume 3 of Texts in Algorithms, pages 3-16. KCL Publications, 2004.
-
(2004)
Texts in Algorithms
, vol.3
, pp. 3-16
-
-
Blin, G.1
Chauve, C.2
Fertin, G.3
-
7
-
-
26844563692
-
Conserved interval distance computation between non-trivial genomes
-
11th International Computing and Combinatorics Conference (COCOON '05). To appear
-
G. Blin and R. Rizzi. Conserved interval distance computation between non-trivial genomes. In 11th International Computing and Combinatorics Conference (COCOON '05), 2005. To appear in Lecture Notes in Computer Science.
-
(2005)
Lecture Notes in Computer Science
-
-
Blin, G.1
Rizzi, R.2
-
8
-
-
1842768393
-
Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse and rat genomes
-
G. Bourque, P.A. Pevzner, and G. Tesler. Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse and rat genomes. Genome Res., 14(4):507-516, 2004.
-
(2004)
Genome Res.
, vol.14
, Issue.4
, pp. 507-516
-
-
Bourque, G.1
Pevzner, P.A.2
Tesler, G.3
-
9
-
-
12744263078
-
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
-
G. Bourque, E.M. Zdobnov, P. Bork, P.A. Pevzner, and G. Tesler. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Res., 15(1):98-110, 2005.
-
(2005)
Genome Res.
, vol.15
, Issue.1
, pp. 98-110
-
-
Bourque, G.1
Zdobnov, E.M.2
Bork, P.3
Pevzner, P.A.4
Tesler, G.5
-
10
-
-
84863067228
-
Computing the assignment of orthologous genes via genome rearrangement
-
Imperial College Press
-
X. Chen, J. Zheng, Z. Fu, P. nan, Y. Zhong, S. Lonardi, and T. Jiang. Computing the assignment of orthologous genes via genome rearrangement. In 3rd Asia-Pacific Bioinformatics Conference 2005, pages 363-378. Imperial College Press, 2005.
-
(2005)
3rd Asia-pacific Bioinformatics Conference 2005
, pp. 363-378
-
-
Chen, X.1
Zheng, J.2
Fu, Z.3
Nan, P.4
Zhong, Y.5
Lonardi, S.6
Jiang, T.7
-
11
-
-
35048877602
-
Reversing gene erosion: Reconstructing ancestral bacterial genomes from gene-content and order data
-
Algorithms in Bioinformatics, 4th International Workshop, WABI 2004. Springer
-
J.V. Earnest-DeYoung, E. Lerat, and B.M.E. Moret. Reversing gene erosion: Reconstructing ancestral bacterial genomes from gene-content and order data. In Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, volume 3240 of Lecture Notes in Bioinformatics, pages 1-13. Springer, 2004.
-
(2004)
Lecture Notes in Bioinformatics
, vol.3240
, pp. 1-13
-
-
Earnest-DeYoung, J.V.1
Lerat, E.2
Moret, B.M.E.3
-
12
-
-
26844472474
-
-
O. Gascuel, editor. Oxford University Press
-
O. Gascuel, editor. Mathematics of Evolution and Phylogeny. Oxford University Press, 2005.
-
(2005)
Mathematics of Evolution and Phylogeny
-
-
-
13
-
-
14544293086
-
Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (γ-proteobacteria)
-
J.T. Herbeck, P.H. Degnan, and J.J. Wernegreen. Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (γ-proteobacteria). Mol. Biol. Evol., 22(3):520-532, 2004.
-
(2004)
Mol. Biol. Evol.
, vol.22
, Issue.3
, pp. 520-532
-
-
Herbeck, J.T.1
Degnan, P.H.2
Wernegreen, J.J.3
-
14
-
-
0344794389
-
Detection and validation of single gene inversions
-
J-F. Lefebvre, N. El-Mabrouk, E. Tillier, and D. Sankoff. Detection and validation of single gene inversions. Bioinformatics, 19(Suppl. 1):i190-i196, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.1 SUPPL.
-
-
Lefebvre, J.-F.1
El-Mabrouk, N.2
Tillier, E.3
Sankoff, D.4
-
15
-
-
1342271382
-
From gene tree to organismal phylogeny in prokaryotes: The case of γ-proteobacteria
-
E. Lerat, V. Daubin, and N.A. Moran. From gene tree to organismal phylogeny in prokaryotes: the case of γ-proteobacteria. PLoS Biology, 1(1):101-109, 2003.
-
(2003)
PLoS Biology
, vol.1
, Issue.1
, pp. 101-109
-
-
Lerat, E.1
Daubin, V.2
Moran, N.A.3
-
16
-
-
0033391532
-
Genome rearrangement with gene families
-
D. Sankoff. Genome rearrangement with gene families. Bioinformatics, 15(11):909-917, 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.11
, pp. 909-917
-
-
Sankoff, D.1
-
17
-
-
0036772910
-
Short inversions and conserved gene clusters
-
D. Sankoff. Short inversions and conserved gene clusters. Bioinformatics, 18(10):1305-1308, 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.10
, pp. 1305-1308
-
-
Sankoff, D.1
-
18
-
-
26444545100
-
The distribution of inversion lengths in prokaryotes
-
Comparative Genomics, RECOMB 2004 International Workshop, RCG 2004. Springer
-
D. Sankoff, J-F. Lefebvre, E. Tillier, A. Maler, and N. El-Mabrouk. The distribution of inversion lengths in prokaryotes. In Comparative Genomics, RECOMB 2004 International Workshop, RCG 2004, volume 3388 of Lecture Notes in Bioinformatics, pages 97-108. Springer, 2005.
-
(2005)
Lecture Notes in Bioinformatics
, vol.3388
, pp. 97-108
-
-
Sankoff, D.1
Lefebvre, J.-F.2
Tillier, E.3
Maler, A.4
El-Mabrouk, N.5
|