-
1
-
-
0025234587
-
pH-induced denaturation of proteins: A single salt bridge contributions 3-5 kcal/mol to the free energy of folding of T4 lysozyme
-
Anderson, D.E., Becktel, W.J., and Dahlquist, F.W. 1990. pH-induced denaturation of proteins: A single salt bridge contributions 3-5 kcal/mol to the free energy of folding of T4 lysozyme. Biochemistry 29: 2403-2408.
-
(1990)
Biochemistry
, vol.29
, pp. 2403-2408
-
-
Anderson, D.E.1
Becktel, W.J.2
Dahlquist, F.W.3
-
3
-
-
3543012707
-
Crystallography and NMR system (CNS): A new software system for macromolecular structure determination
-
Brünger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N.S., et al. 1998. Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54: 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
4
-
-
0028773279
-
Biological implications of a 3 Å structure of dimeric antithrombin
-
Carrell, R.W., Stein, P.E., Fermi, G., and Wardell, M.R. 1994. Biological implications of a 3 Å structure of dimeric antithrombin. Structure 2: 257-270.
-
(1994)
Structure
, vol.2
, pp. 257-270
-
-
Carrell, R.W.1
Stein, P.E.2
Fermi, G.3
Wardell, M.R.4
-
5
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4 (CCP4). 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50: 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
6
-
-
0026802277
-
Structure of a hinge-bending bacteriophage T4 lysozyme mutant, Ile 3 → Pro
-
Dixon, M.M., Nicholson, H., Shewchuk, L., Baase, W.A., and Matthews, B.W. 1992. Structure of a hinge-bending bacteriophage T4 lysozyme mutant, Ile 3 → Pro. J. Mol. Biol. 227: 917-933.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 917-933
-
-
Dixon, M.M.1
Nicholson, H.2
Shewchuk, L.3
Baase, W.A.4
Matthews, B.W.5
-
7
-
-
0009581305
-
Putative intermediates between T4 and P22 lysozymes show the importance of synergistic effects in protein evolution
-
eds. M. Vijayan et al. Indian Academy of Sciences and the Universities Press, Hyderabad, India
-
DuBose, R.F., Baase, W.A., Zhang, X.-J., Xu, J., and Matthews, B.W. 1999. Putative intermediates between T4 and P22 lysozymes show the importance of synergistic effects in protein evolution. In Perspectives in structural biology, a volume in honour of G.N. Ramachandran (eds. M. Vijayan et al.), pp. 139-152. Indian Academy of Sciences and the Universities Press, Hyderabad, India.
-
(1999)
Perspectives in Structural Biology, a Volume in Honour of G.N. Ramachandran
, pp. 139-152
-
-
DuBose, R.F.1
Baase, W.A.2
Zhang, X.-J.3
Xu, J.4
Matthews, B.W.5
-
8
-
-
0027394606
-
Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences
-
Eriksson, A.E., Baase, W.A., and Matthews, B.W. 1993. Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences. J. Mol. Biol. 229: 747-769.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 747-769
-
-
Eriksson, A.E.1
Baase, W.A.2
Matthews, B.W.3
-
9
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf, R.M. 1997. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. 15: 133-138.
-
(1997)
J. Mol. Graph.
, vol.15
, pp. 133-138
-
-
Esnouf, R.M.1
-
10
-
-
0842269784
-
A conformational switch in the Piccolo C2A domain regulated by alternative splicing
-
Garcia, J., Gerber, S.H., Sugita, S., Südhof, T.C., and Rizo, J. 2004. A conformational switch in the Piccolo C2A domain regulated by alternative splicing. Nat. Struct. Biol. 11: 45-53.
-
(2004)
Nat. Struct. Biol.
, vol.11
, pp. 45-53
-
-
Garcia, J.1
Gerber, S.H.2
Sugita, S.3
Südhof, T.C.4
Rizo, J.5
-
11
-
-
0033517740
-
Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is the rate-limiting step in folding
-
Gassner, N.C., Baase, W.A., Lindstrom, J.D., Lu, J., Dahlquist, F.W., and Matthews, B.W. 1999. Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is the rate-limiting step in folding. Biochemistry 38: 14451-14460.
-
(1999)
Biochemistry
, vol.38
, pp. 14451-14460
-
-
Gassner, N.C.1
Baase, W.A.2
Lindstrom, J.D.3
Lu, J.4
Dahlquist, F.W.5
Matthews, B.W.6
-
12
-
-
0021095334
-
Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor
-
Goldenberg, D.P. and Creighton, T.E. 1983. Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor. J. Mol. Biol. 165: 407-413.
-
(1983)
J. Mol. Biol.
, vol.165
, pp. 407-413
-
-
Goldenberg, D.P.1
Creighton, T.E.2
-
13
-
-
4644264473
-
Alanine-scanning mutagenesis of the β-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on β-sheet formation
-
He, M.M., Wood, Z.A., Baase, W.A., Xiao, H., and Matthews, B.W. 2004. Alanine-scanning mutagenesis of the β-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on β-sheet formation. Protein Sci. 13: 2716-2724.
-
(2004)
Protein Sci.
, vol.13
, pp. 2716-2724
-
-
He, M.M.1
Wood, Z.A.2
Baase, W.A.3
Xiao, H.4
Matthews, B.W.5
-
14
-
-
0027497604
-
How amino-acid insertions are allowed in an α-helix of T4 lysozyme
-
Heinz, D.W., Baase, W.A., Dahlquist, F.W., and Matthews, B.W. 1993. How amino-acid insertions are allowed in an α-helix of T4 lysozyme. Nature 361: 561-564.
-
(1993)
Nature
, vol.361
, pp. 561-564
-
-
Heinz, D.W.1
Baase, W.A.2
Dahlquist, F.W.3
Matthews, B.W.4
-
15
-
-
0033923044
-
Systematic circular permutation of an entire protein reveals essential folding elements
-
Iwakura, M., Nakamura, T., Yamane, C., and Maki, K. 2000. Systematic circular permutation of an entire protein reveals essential folding elements. Nat. Struct. Biol. 7: 580-585.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 580-585
-
-
Iwakura, M.1
Nakamura, T.2
Yamane, C.3
Maki, K.4
-
16
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47: 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
17
-
-
85046526624
-
Evaluation of single X-ray diffraction data from a position sensitive detector
-
Kabsch, W. 1988. Evaluation of single X-ray diffraction data from a position sensitive detector. J. Appl. Crystallogr. 21: 916-924.
-
(1988)
J. Appl. Crystallogr.
, vol.21
, pp. 916-924
-
-
Kabsch, W.1
-
18
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
_. 1993. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J. Appl. Crystallogr. 26: 795-800.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
-
19
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
20
-
-
0034719388
-
Design of single-layer β-sheets without a hydrophobic core
-
Koide, S., Huang, X., Link, K., Koide, A., Bu, Z., and Engelman, D.M. 2000. Design of single-layer β-sheets without a hydrophobic core. Nature 403: 456-460.
-
(2000)
Nature
, vol.403
, pp. 456-460
-
-
Koide, S.1
Huang, X.2
Link, K.3
Koide, A.4
Bu, Z.5
Engelman, D.M.6
-
21
-
-
0037370461
-
Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences
-
Kondrashov, F.A. and Koonin, E.V. 2003. Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences. Trends Genet. 19: 115-119.
-
(2003)
Trends Genet.
, vol.19
, pp. 115-119
-
-
Kondrashov, F.A.1
Koonin, E.V.2
-
22
-
-
0031576337
-
Glutamine, alanine and glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates
-
Ladurner, A.G. and Fersht, A.R. 1997. Glutamine, alanine and glycine repeats inserted into the loop of a protein have minimal effects on stability and folding rates. J. Mol. Biol. 273: 330-337.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 330-337
-
-
Ladurner, A.G.1
Fersht, A.R.2
-
23
-
-
0003076963
-
Recent changes to the MOSFLM package for processing film and image plate data
-
Daresbury Laboratory, Warrington, UK
-
Leslie, A.G.W. 1992. Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 and ESF-EACMB newsletter on protein crystallography, No. 26. Daresbury Laboratory, Warrington, UK.
-
(1992)
Joint CCP4 and ESF-EACMB Newsletter on Protein Crystallography
, Issue.26
-
-
Leslie, A.G.W.1
-
24
-
-
0026742164
-
Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR
-
Lu, J. and Dahlquist, F.W. 1992. Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR. Biochemistry 31: 4749-4756.
-
(1992)
Biochemistry
, vol.31
, pp. 4749-4756
-
-
Lu, J.1
Dahlquist, F.W.2
-
25
-
-
0024564552
-
Control of enzyme activity by an engineered disulfide bond
-
Matsumara, M. and Matthews, B.W. 1989. Control of enzyme activity by an engineered disulfide bond. Science 243: 792-794.
-
(1989)
Science
, vol.243
, pp. 792-794
-
-
Matsumara, M.1
Matthews, B.W.2
-
26
-
-
0028057108
-
Raster3D version 2.0. A program for photorealistic molecular graphics
-
Merritt, E.A. and Murphy, M.E.P. 1994. Raster3D version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 50: 869-873.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 869-873
-
-
Merritt, E.A.1
Murphy, M.E.P.2
-
27
-
-
0030931579
-
Conformational analysis of LYS(11-36), a peptide derived from the β-sheet region of T4 lysozyme, in TFE and SDS
-
Najbar, L.V., Craik, D.J., Wade, J.D., Salvatore, D., and McLeish, M.J. 1997. Conformational analysis of LYS(11-36), a peptide derived from the β-sheet region of T4 lysozyme, in TFE and SDS. Biochemistry 36: 11525-11533.
-
(1997)
Biochemistry
, vol.36
, pp. 11525-11533
-
-
Najbar, L.V.1
Craik, D.J.2
Wade, J.D.3
Salvatore, D.4
McLeish, M.J.5
-
28
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza, J. 1994. AMoRe: An automated package for molecular replacement. Acta Crystallogr. A 50: 157-163.
-
(1994)
Acta Crystallogr. A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
29
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276: 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
30
-
-
0025761294
-
Second-site revertants of an inactive T4 lysozyme mutant restore activity structuring the active site cleft
-
Poteete, A.R., Dao-Pin, S., Nicholson, H., and Matthews, B.W. 1991. Second-site revertants of an inactive T4 lysozyme mutant restore activity structuring the active site cleft. Biochemistry 30: 1425-1432.
-
(1991)
Biochemistry
, vol.30
, pp. 1425-1432
-
-
Poteete, A.R.1
Dao-Pin, S.2
Nicholson, H.3
Matthews, B.W.4
-
31
-
-
0036298520
-
Crystal structures of a T4-lysozyme-duplication extension mutant demonstrates that the highly conserved β-sheet region in T4 has low intrinsic folding propensity
-
Sagermann, M. and Matthews, B.W. 2002. Crystal structures of a T4-lysozyme-duplication extension mutant demonstrates that the highly conserved β-sheet region in T4 has low intrinsic folding propensity. J. Mol. Biol. 316: 931-940.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 931-940
-
-
Sagermann, M.1
Matthews, B.W.2
-
32
-
-
0033028682
-
Structural characterization of an engineered tandem repeat contrasts the importance of context and sequence in protein folding
-
Sagermann, M., Baase, W.A., and Matthews, B.W. 1999. Structural characterization of an engineered tandem repeat contrasts the importance of context and sequence in protein folding. Proc. Natl. Acad. Sci. 96: 6078-6083.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 6078-6083
-
-
Sagermann, M.1
Baase, W.A.2
Matthews, B.W.3
-
33
-
-
0041923833
-
Long-distance conformational changes in a protein engineered by modulated sequence duplication
-
Sagermann, M., Gay, L., and Matthews, B.W. 2003. Long-distance conformational changes in a protein engineered by modulated sequence duplication. Proc. Natl. Acad. Sci. 100: 9191-9195.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 9191-9195
-
-
Sagermann, M.1
Gay, L.2
Matthews, B.W.3
-
34
-
-
0842347938
-
Relocation or duplication of the Helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding
-
Sagermann, M., Baase, W.A., Mooers, B.H.M., Gay, L., and Matthews, B.W. 2004. Relocation or duplication of the Helix A sequence of T4 lysozyme causes only modest changes in structure but can increase or decrease the rate of folding. Biochemistry 43: 1296-1301.
-
(2004)
Biochemistry
, vol.43
, pp. 1296-1301
-
-
Sagermann, M.1
Baase, W.A.2
Mooers, B.H.M.3
Gay, L.4
Matthews, B.W.5
-
35
-
-
0035109099
-
Testing the role of chain connectivity in the stability and structure of dihydrofolate reductase from. E. coli: Fragment complementation and circular permutation reveal stable, alternatively folded forms
-
Smith, V.F. and Matthews, C.R. 2001. Testing the role of chain connectivity in the stability and structure of dihydrofolate reductase from. E. coli: Fragment complementation and circular permutation reveal stable, alternatively folded forms. Protein Sci. 10: 116-128.
-
(2001)
Protein Sci.
, vol.10
, pp. 116-128
-
-
Smith, V.F.1
Matthews, C.R.2
-
36
-
-
0002518563
-
Knowledge-based B-factor restraints for the refinement of proteins
-
Tronrud, D.E. 1996. Knowledge-based B-factor restraints for the refinement of proteins. J. Appl. Crystallogr. 29: 100-104.
-
(1996)
J. Appl. Crystallogr.
, vol.29
, pp. 100-104
-
-
Tronrud, D.E.1
-
37
-
-
84913050729
-
An efficient general-purpose least-squares refinement program for macromolecular structures
-
Tronrud, D.E., Ten Eyck, L.F., and Matthews, B.W. 1987. An efficient general-purpose least-squares refinement program for macromolecular structures. Acta Crystallogr. A 43: 489-503.
-
(1987)
Acta Crystallogr. A
, vol.43
, pp. 489-503
-
-
Tronrud, D.E.1
Ten Eyck, L.F.2
Matthews, B.W.3
-
38
-
-
0030462974
-
Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme
-
Vetter, I.R., Baase, W.A., Heinz, D.W., Xiong, J.-P., Snow, S., and Matthews, B.W. 1996. Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme. Protein Sci. 5: 2399-2415.
-
(1996)
Protein Sci.
, vol.5
, pp. 2399-2415
-
-
Vetter, I.R.1
Baase, W.A.2
Heinz, D.W.3
Xiong, J.-P.4
Snow, S.5
Matthews, B.W.6
-
39
-
-
0030663205
-
Loop length and intramolecular diffusion and protein folding
-
Viguera, A.R. and Serrano, L. 1997. Loop length and intramolecular diffusion and protein folding. Nat. Struct. Biol. 4: 939-946.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 939-946
-
-
Viguera, A.R.1
Serrano, L.2
-
40
-
-
4644229995
-
The importance of loop length in the folding of an immunoglobulin domain
-
Wright, C.F., Christodoulou, J., Dobson, C.M., and Clarke, J. 2004. The importance of loop length in the folding of an immunoglobulin domain. Protein Eng. Des. Sel. 17: 443-453.
-
(2004)
Protein Eng. Des. Sel.
, vol.17
, pp. 443-453
-
-
Wright, C.F.1
Christodoulou, J.2
Dobson, C.M.3
Clarke, J.4
-
41
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
-
Zhang, X.-J., Wozniak, J.A., and Matthews, B.W. 1995. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. J. Mol. Biol. 250: 527-552.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 527-552
-
-
Zhang, X.-J.1
Wozniak, J.A.2
Matthews, B.W.3
|