Multiplex RT-PCR, a novel technique for the simultaneous detection of the DNA and RNA viruses causing rice tungro disease

Journal of Virological Methods

Volumn 134, Issue 1-2, 2006, Pages 230-236

  Periasamy, M ^a   Niazi, F R ^a   Malathi, V G ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

Multiplex RT PCR; Resistance screening; Rice hybrids; Rice tungro bacilliform virus; Rice tungro spherical virus

Indexed keywords

COMPLEMENTARY DNA; GENOMIC RNA; SINGLE STRANDED RNA;

ARTICLE; CONTROLLED STUDY; DNA SYNTHESIS; DNA VIRUS; NONHUMAN; PLANT DISEASE; PLANT VIRUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RICE TUNGRO; RICE TUNGRO BACILLIFORM VIRUS; RNA EXTRACTION; RNA VIRUS; SCREENING; VIRUS DETECTION;

BADNAVIRUS; DNA PRIMERS; DNA, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; ORYZA SATIVA; PLANT DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; WAIKAVIRUS;

DNA VIRUSES; RICE TUNGRO BACILLIFORM VIRUS; RICE TUNGRO SPHERICAL VIRUS; RNA VIRUSES;

EID: 33646124955     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.01.010     Document Type: Article

References (24)

1. Azzam O., Yambao M.L.M., Muhsin M., McNally K.L., and Umadhay K.M.L. Genetic diversity of rice tungro spherical virus in tungro-endemic provinces of the Philippines and Indonesia. Arch. Virol. 145 (2000) 1183-1197
2. Bajet N.B., Daquioag R.D., and Hibino H. Enzyme-linked immunosorbent assay to diagnose rice tungro. J. Pl. Prot. Tropics. 2 (1985) 125-129
3. Bariana H.S., Shannon A.L., Chu P.W.G., and Waterhouse P.M. Detection of five seedborne legume viruses in one sensitive multiplex polymerase chain reaction test. Phytopathology 84 (1994) 1201-1205
4. Dasgupta I., Das B.K., Nath P.S., Mukhopadhyay S., Niazi F.R., and Varma A. Detection of rice tungro bacilliform virus in field and glasshouse samples from India using the polymerase chain reaction. J. Virol. Meth. 58 (1996) 53-58
5. Gitton F., Diao A., Ducrot O., Antoniw J.F., Adams M.J., and Maraite H. A two step multiplex RT-PCR method for simultaneous detection of soil borne wheat mosaic virus and wheat spindle streak mosaic virus from France. Pl. Pathol. 48 (1999) 635-641
6. Herdt R.W. Research priorities for rice biotechnology. In: Khush G.S., and Toenniessen G.H. (Eds). Rice Biotechnology (1991), CABI, Wallingford 19-54
7. Hibino H. Relations of rice tungro bacilliform and rice tungro spherical viruses with their vector Nephotettix virescens. Ann. Phytopathol. Soc. Jpn. 49 (1983) 545-553
8. Hull R. Molecular biology of rice tungro viruses. Ann. Rev. Phytopathol. 34 (1996) 275-297
9. Jacobi V., Bachand G.D., Hamelin R.C., and Castello J.D. Development of a multiplex immunocapture RT-PCR assay for detection and differentiation of tomato and tobacco mosaic tobamoviruses. J. Virol. Meth. 74 (1998) 167-178
10. Jakowitsch J., Mette M.F., van der Winden J., Matzke M.A., and Matzke A.J.M. Integrated pararetroviral sequences define a unique class of dispersed repetitive DNA in plants. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 13241-13246
11. Mishra M.D., Niazi F.R., Basu A.N., Ghosh A., and Raychaudhuri S.P. Detection and characterization of a new strain of rice tungro virus in India. Pl. Dis. Reptr. 60 (1976) 23-25
12. Nie X., and Singh R.P. Detection of multiple potato viruses using an oligo (dT) as a common cDNA primer in multiplex RT-PCR. J. Virol. Meth. 86 (2000) 179-185
13. Niazi F.R., Singh J., and Pant R.P. Differential susceptibility of rice cultivars to rice tungro spherical and bacilliform viruses. Indian Phytopath. 57 (2004) 507-508
14. Radhakrishnan G., and Niazi F.R. Reaction of rice hybrids and basmati varieties to tungro infection and indexing for rice tungro bacilliform virus with DNA probes. Indian Phytopath. 53 (2000) 129-133
15. Reddy G.P., Anand P.S.B., and Kannan K. Hybrid rice for food security: potentials and options. Yojana 43 (1999) 21-22
16. Saade M., Aparicio F., Sanchez-Navarro J.A., Herranz M.C., Myrta A., Diterlizzi B., and Pallas V. Simultaneous detection of the three Ilarviruses affecting stone fruit Trees by nonisotopic molecular hybridization and multiplex reverse transcription polymerase chain reaction. Phytopathology 90 (2000) 1330-1336
17. Saito Y., Iwaki M., and Usugi T. Association of two types of particles of tungro-group disease of rice. Ann. Phytopathol. Soc. Jpn. 43 (1976) 375
18. Sarkar C.K.G., Zaman F.U., and Singh A.K. Heterosis for yield and yield attributes in 'WA' type rice hybrids (Oryza sativa L.) on multilocation performance. Crop Res. 22 (2001) 262-266
19. Shen P., Kaniewska M., Smith C., and Beachy R.N. Nucleotide sequence and genomic organization of rice tungro spherical virus. Virology 9 (1993) 621-630
20. Takahashi Y., Tiongco E.R., Cabauatan P.Q., Koganezawa H., Hibino H., and Omura T. Detection of rice tungro bacilliform virus by polymerase chain reaction for assessing mild infection of plants and viruliferous vector leafhoppers. Phytopathology 83 (1993) 655-659
21. Tiongco E.R., Cabunagan R.C., and Hibino H. Resistance of five IR varieties to tungro. Int. Rice Res. Newsl. 8 (1983) 6
22. Varma A., Niazi F.R., Dasgupta I., Singh J., Cheema S.S., and Sokhi S.S. Alarming epidemic of rice tungro disease in north-west India. Indian Phytopath. 52 (1999) 71-74
23. Venkitesh S.R., Briddon R.W., and Markham P.G. Detection of rice tungro bacilliform virus (RTBV) in asymptomatic leaves of tungro-infected rice plants by polymerase chain reaction (PCR). Int. Rice Res. Newsl. 18 (1993) 13-14
24. Yambao M.L.M., Cabauaton P.Q., and Azzam O. Differentiation of rice tungro spherical virus variants by RT-PCR and RFLP. Int. Rice Res. Newsl. 23 (1998) 22-24